Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Steap3-204ENSMUST00000112643 2873 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
RaraP11416 A430005L14Rik-202ENSMUST00000105645 977 ntTSL 3 BASIC13.65□□□□□ -0.22
RaraP11416 Mul1-203ENSMUST00000105815 473 ntTSL 3 BASIC13.65□□□□□ -0.22
RaraP11416 Hist1h2br-202ENSMUST00000110476 381 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
RaraP11416 Gm15703-201ENSMUST00000120250 880 ntBASIC13.65□□□□□ -0.22
RaraP11416 Gm12363-201ENSMUST00000122250 668 ntBASIC13.65□□□□□ -0.22
RaraP11416 Gm16191-201ENSMUST00000141445 520 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
RaraP11416 Tmem205-202ENSMUST00000178988 862 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
RaraP11416 1190007I07Rik-205ENSMUST00000185168 469 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
RaraP11416 Gm37753-201ENSMUST00000192178 439 ntTSL 2 BASIC13.65□□□□□ -0.22
RaraP11416 Myl10-202ENSMUST00000196068 911 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
RaraP11416 Myl10-203ENSMUST00000196436 598 ntTSL 3 BASIC13.65□□□□□ -0.22
RaraP11416 Gm35549-203ENSMUST00000204619 644 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
RaraP11416 Plin1-203ENSMUST00000205413 1294 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
RaraP11416 Gm32926-201ENSMUST00000214043 681 ntTSL 3 BASIC13.65□□□□□ -0.22
RaraP11416 Tex12-202ENSMUST00000217236 1003 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
RaraP11416 Gm867-202ENSMUST00000219979 714 ntAPPRIS P1 TSL 3 BASIC13.65□□□□□ -0.22
RaraP11416 AC165260.3-202ENSMUST00000224550 1031 ntBASIC13.65□□□□□ -0.22
RaraP11416 Phgr1-201ENSMUST00000061360 538 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
RaraP11416 Tmem107-201ENSMUST00000075980 779 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
RaraP11416 Hist1h2bq-201ENSMUST00000078156 381 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
RaraP11416 Gng8-201ENSMUST00000078182 910 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
RaraP11416 Gm44775-201ENSMUST00000207266 1456 ntBASIC13.65□□□□□ -0.22
RaraP11416 B230209E15Rik-201ENSMUST00000209115 1597 ntTSL 5 BASIC13.65□□□□□ -0.22
RaraP11416 AC091764.2-201ENSMUST00000218190 1590 ntTSL 5 BASIC13.65□□□□□ -0.22
RaraP11416 Hnrnpr-201ENSMUST00000084219 2647 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
RaraP11416 C77080-203ENSMUST00000106051 5049 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
RaraP11416 Cr1l-201ENSMUST00000075451 1651 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
RaraP11416 C77080-202ENSMUST00000097873 5033 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
RaraP11416 Aff4-201ENSMUST00000060945 10099 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
RaraP11416 Epb41l2-207ENSMUST00000218903 4115 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
RaraP11416 Gm43051-201ENSMUST00000201096 2678 ntBASIC13.65□□□□□ -0.22
RaraP11416 Sema4a-202ENSMUST00000107531 2897 ntTSL 5 BASIC13.65□□□□□ -0.22
RaraP11416 Retreg1-206ENSMUST00000228306 1430 ntBASIC13.64□□□□□ -0.23
RaraP11416 Serpinb13-201ENSMUST00000027564 1607 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
RaraP11416 Gprc5c-208ENSMUST00000177952 1809 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
RaraP11416 AC126262.1-201ENSMUST00000221802 1904 ntBASIC13.64□□□□□ -0.23
RaraP11416 Slc5a11-207ENSMUST00000167299 2022 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
RaraP11416 Gm43365-201ENSMUST00000196522 2106 ntBASIC13.64□□□□□ -0.23
RaraP11416 Per1-206ENSMUST00000166748 4636 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
RaraP11416 Urgcp-202ENSMUST00000093362 5089 ntAPPRIS P4 TSL 1 (best) BASIC13.64□□□□□ -0.23
RaraP11416 Tubgcp3-201ENSMUST00000000776 3797 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
RaraP11416 Gpd2-207ENSMUST00000169687 5745 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
RaraP11416 1110034G24Rik-202ENSMUST00000110132 1471 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
RaraP11416 Psmb9-204ENSMUST00000174576 1351 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
RaraP11416 Mir1894-201ENSMUST00000122802 81 ntBASIC13.64□□□□□ -0.23
RaraP11416 Xrcc2-204ENSMUST00000134972 464 ntTSL 3 BASIC13.64□□□□□ -0.23
RaraP11416 Drap1-209ENSMUST00000136579 734 ntTSL 2 BASIC13.64□□□□□ -0.23
RaraP11416 Pfdn6-204ENSMUST00000174048 560 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
RaraP11416 2810039B14Rik-206ENSMUST00000185040 1113 ntBASIC13.64□□□□□ -0.23
RaraP11416 Gm19184-201ENSMUST00000196798 928 ntBASIC13.64□□□□□ -0.23
RaraP11416 4933405L10Rik-202ENSMUST00000211852 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
RaraP11416 Ifitm3-201ENSMUST00000026565 678 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
RaraP11416 Ssc4d-201ENSMUST00000054895 1191 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
RaraP11416 Rps15-201ENSMUST00000062674 572 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
RaraP11416 n-R5s77-201ENSMUST00000083757 119 ntBASIC13.64□□□□□ -0.23
RaraP11416 Plpp4-201ENSMUST00000094018 1256 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
RaraP11416 Espn-201ENSMUST00000030785 3406 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
RaraP11416 AI661453-202ENSMUST00000150819 4866 ntAPPRIS P2 TSL 5 BASIC13.64□□□□□ -0.23
RaraP11416 Olfr607-202ENSMUST00000214347 5706 ntAPPRIS P5 TSL 5 BASIC13.64□□□□□ -0.23
RaraP11416 Alpi-201ENSMUST00000113270 2337 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
RaraP11416 Slc22a16-201ENSMUST00000019978 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
RaraP11416 Tbc1d14-205ENSMUST00000136189 4436 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
RaraP11416 Ebp-201ENSMUST00000033509 1743 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
RaraP11416 1110046J04Rik-202ENSMUST00000180906 2776 ntBASIC13.64□□□□□ -0.23
RaraP11416 Klhl8-202ENSMUST00000112811 2577 ntTSL 5 BASIC13.64□□□□□ -0.23
RaraP11416 Gm9816-201ENSMUST00000122292 1414 ntBASIC13.64□□□□□ -0.23
RaraP11416 Wfs1-201ENSMUST00000043964 3787 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
RaraP11416 Gm9866-202ENSMUST00000182473 1882 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
RaraP11416 Prr18-202ENSMUST00000163887 3251 ntAPPRIS P1 TSL 3 BASIC13.63□□□□□ -0.23
RaraP11416 Mxd1-201ENSMUST00000001184 4666 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
RaraP11416 Slc33a1-201ENSMUST00000029402 3150 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
RaraP11416 Lmna-201ENSMUST00000029699 3156 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
RaraP11416 Rps6ka6-210ENSMUST00000137712 2410 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
RaraP11416 Gm12968-201ENSMUST00000138291 1454 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
RaraP11416 Sipa1l2-204ENSMUST00000212987 6690 ntAPPRIS P2 TSL 5 BASIC13.63□□□□□ -0.23
RaraP11416 Zhx2-201ENSMUST00000096430 4376 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
RaraP11416 Folr1-205ENSMUST00000106986 1286 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
RaraP11416 Apoc1-202ENSMUST00000108451 532 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
RaraP11416 Gm14064-201ENSMUST00000134833 727 ntTSL 3 BASIC13.63□□□□□ -0.23
RaraP11416 Gm11754-201ENSMUST00000156576 661 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
RaraP11416 Gm22331-201ENSMUST00000158066 136 ntBASIC13.63□□□□□ -0.23
RaraP11416 Grp-202ENSMUST00000173530 617 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
RaraP11416 Dnm3os-203ENSMUST00000185878 557 ntTSL 5 BASIC13.63□□□□□ -0.23
RaraP11416 Dnd1-ps-201ENSMUST00000196992 964 ntBASIC13.63□□□□□ -0.23
RaraP11416 AC132317.1-201ENSMUST00000227227 962 ntBASIC13.63□□□□□ -0.23
RaraP11416 Tada3-203ENSMUST00000099118 1282 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
RaraP11416 Slc44a4-201ENSMUST00000007249 2261 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
RaraP11416 Olfr1419-203ENSMUST00000217617 3087 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
RaraP11416 Arhgap24-206ENSMUST00000112854 2991 ntTSL 5 BASIC13.63□□□□□ -0.23
RaraP11416 Git2-202ENSMUST00000086564 2984 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
RaraP11416 Eme2-201ENSMUST00000119848 5226 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
RaraP11416 Chst15-201ENSMUST00000077472 5041 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
RaraP11416 Csrnp2-201ENSMUST00000061457 4126 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
RaraP11416 Gja5-203ENSMUST00000199597 3668 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
RaraP11416 Gm16907-201ENSMUST00000180734 2317 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
RaraP11416 Pogk-202ENSMUST00000128861 4848 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
RaraP11416 Dnmt3c-201ENSMUST00000119996 2223 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
RaraP11416 Tle1-201ENSMUST00000030095 2569 ntTSL 5 BASIC13.63□□□□□ -0.23
RaraP11416 Prkar1b-202ENSMUST00000110889 2457 ntTSL 5 BASIC13.63□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 65.8 ms