Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Ntng1-211ENSMUST00000156177 4652 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
Hmgb3O54879 Gm15851-201ENSMUST00000160564 662 ntTSL 3 BASIC10.44□□□□□ -0.74
Hmgb3O54879 Gm25349-201ENSMUST00000177728 110 ntBASIC10.44□□□□□ -0.74
Hmgb3O54879 Gm23616-201ENSMUST00000177797 110 ntBASIC10.44□□□□□ -0.74
Hmgb3O54879 Gm25871-201ENSMUST00000177816 110 ntBASIC10.44□□□□□ -0.74
Hmgb3O54879 Gm24752-201ENSMUST00000178240 110 ntBASIC10.44□□□□□ -0.74
Hmgb3O54879 Gm24496-201ENSMUST00000178287 110 ntBASIC10.44□□□□□ -0.74
Hmgb3O54879 Gm25649-201ENSMUST00000178476 110 ntBASIC10.44□□□□□ -0.74
Hmgb3O54879 Gm25548-201ENSMUST00000178681 110 ntBASIC10.44□□□□□ -0.74
Hmgb3O54879 Gm23147-201ENSMUST00000178841 110 ntBASIC10.44□□□□□ -0.74
Hmgb3O54879 Gm26095-201ENSMUST00000179270 110 ntBASIC10.44□□□□□ -0.74
Hmgb3O54879 Gm22171-201ENSMUST00000179283 110 ntBASIC10.44□□□□□ -0.74
Hmgb3O54879 Gm23936-201ENSMUST00000179354 110 ntBASIC10.44□□□□□ -0.74
Hmgb3O54879 Gm22619-201ENSMUST00000179516 110 ntBASIC10.44□□□□□ -0.74
Hmgb3O54879 Gm25255-201ENSMUST00000179579 110 ntBASIC10.44□□□□□ -0.74
Hmgb3O54879 Gm24755-201ENSMUST00000179691 110 ntBASIC10.44□□□□□ -0.74
Hmgb3O54879 Gm26506-201ENSMUST00000179692 110 ntBASIC10.44□□□□□ -0.74
Hmgb3O54879 Gm25086-201ENSMUST00000179931 110 ntBASIC10.44□□□□□ -0.74
Hmgb3O54879 Gm23243-201ENSMUST00000180047 110 ntBASIC10.44□□□□□ -0.74
Hmgb3O54879 Gm24659-201ENSMUST00000180212 110 ntBASIC10.44□□□□□ -0.74
Hmgb3O54879 Gm24169-201ENSMUST00000180244 110 ntBASIC10.44□□□□□ -0.74
Hmgb3O54879 Gm23689-201ENSMUST00000180354 110 ntBASIC10.44□□□□□ -0.74
Hmgb3O54879 Gm27622-201ENSMUST00000183779 60 ntBASIC10.44□□□□□ -0.74
Hmgb3O54879 Gm27533-201ENSMUST00000183800 152 ntBASIC10.44□□□□□ -0.74
Hmgb3O54879 Gm27359-201ENSMUST00000184153 110 ntBASIC10.44□□□□□ -0.74
Hmgb3O54879 Gm27785-201ENSMUST00000184268 110 ntBASIC10.44□□□□□ -0.74
Hmgb3O54879 Gm27466-201ENSMUST00000184396 110 ntBASIC10.44□□□□□ -0.74
Hmgb3O54879 Gm27703-201ENSMUST00000184836 110 ntBASIC10.44□□□□□ -0.74
Hmgb3O54879 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
Hmgb3O54879 Gm42787-201ENSMUST00000200879 1164 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
Hmgb3O54879 Gm18905-201ENSMUST00000205454 928 ntBASIC10.44□□□□□ -0.74
Hmgb3O54879 Hapln3-202ENSMUST00000205782 930 ntTSL 5 BASIC10.44□□□□□ -0.74
Hmgb3O54879 Tssc1-207ENSMUST00000222407 489 ntTSL 3 BASIC10.44□□□□□ -0.74
Hmgb3O54879 Il17b-201ENSMUST00000025471 692 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Hmgb3O54879 Prdx4-201ENSMUST00000026328 990 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Hmgb3O54879 Pla2g2e-201ENSMUST00000030531 854 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Hmgb3O54879 Chchd10-201ENSMUST00000058906 939 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Hmgb3O54879 4931406P16Rik-202ENSMUST00000108074 6224 ntAPPRIS P1 TSL 5 BASIC10.44□□□□□ -0.74
Hmgb3O54879 Zfp423-201ENSMUST00000052250 4510 ntAPPRIS ALT2 TSL 1 (best) BASIC10.44□□□□□ -0.74
Hmgb3O54879 Prkag2-202ENSMUST00000076306 2838 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
Hmgb3O54879 Zp1-201ENSMUST00000025641 1963 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Hmgb3O54879 Grm5-201ENSMUST00000107263 3516 ntAPPRIS P3 TSL 1 (best) BASIC10.44□□□□□ -0.74
Hmgb3O54879 Zfp629-203ENSMUST00000122066 5850 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Hmgb3O54879 Bcorl1-203ENSMUST00000136348 7446 ntAPPRIS P1 TSL 5 BASIC10.44□□□□□ -0.74
Hmgb3O54879 Myocd-201ENSMUST00000101042 2585 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
Hmgb3O54879 Onecut1-201ENSMUST00000056006 3957 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Hmgb3O54879 Kif1b-203ENSMUST00000060537 10233 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
Hmgb3O54879 Gng5-202ENSMUST00000118280 2419 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Hmgb3O54879 Rbfox2-202ENSMUST00000111581 3072 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
Hmgb3O54879 Rasgef1b-209ENSMUST00000168092 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Hmgb3O54879 Rasgef1b-201ENSMUST00000031276 2990 ntAPPRIS P3 TSL 1 (best) BASIC10.44□□□□□ -0.74
Hmgb3O54879 Dido1-206ENSMUST00000103057 4906 ntAPPRIS ALT2 TSL 1 (best) BASIC10.44□□□□□ -0.74
Hmgb3O54879 Serpinb12-202ENSMUST00000112724 1623 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Hmgb3O54879 Prc1-206ENSMUST00000173824 2912 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
Hmgb3O54879 Greb1-201ENSMUST00000048064 7940 ntAPPRIS P3 TSL 1 (best) BASIC10.43□□□□□ -0.74
Hmgb3O54879 Ppp2r1b-202ENSMUST00000114437 3430 ntAPPRIS P2 TSL 1 (best) BASIC10.43□□□□□ -0.74
Hmgb3O54879 Gab3-201ENSMUST00000037374 2153 ntAPPRIS P2 TSL 1 (best) BASIC10.43□□□□□ -0.74
Hmgb3O54879 Pced1b-201ENSMUST00000059433 2185 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Hmgb3O54879 Abl2-202ENSMUST00000166172 10151 ntAPPRIS ALT2 TSL 1 (best) BASIC10.43□□□□□ -0.74
Hmgb3O54879 Flywch1-201ENSMUST00000045517 2798 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Hmgb3O54879 Zmat1-202ENSMUST00000113185 3378 ntAPPRIS ALT2 TSL 5 BASIC10.43□□□□□ -0.74
Hmgb3O54879 Ctsk-201ENSMUST00000015664 1512 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Hmgb3O54879 Stx17-201ENSMUST00000064765 1531 ntAPPRIS P1 TSL 5 BASIC10.43□□□□□ -0.74
Hmgb3O54879 Gm26857-201ENSMUST00000181580 3347 ntTSL 5 BASIC10.43□□□□□ -0.74
Hmgb3O54879 Arhgap39-201ENSMUST00000036176 4500 ntAPPRIS ALT2 TSL 5 BASIC10.43□□□□□ -0.74
Hmgb3O54879 Bdh1-202ENSMUST00000115226 1496 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Hmgb3O54879 AC122371.1-201ENSMUST00000220876 1477 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
Hmgb3O54879 Zfp467-204ENSMUST00000114559 3163 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
Hmgb3O54879 Pabpc4-204ENSMUST00000106243 3111 ntAPPRIS ALT1 TSL 5 BASIC10.43□□□□□ -0.74
Hmgb3O54879 Ppp1r9b-202ENSMUST00000107748 3095 ntAPPRIS ALT2 TSL 1 (best) BASIC10.43□□□□□ -0.74
Hmgb3O54879 Cchcr1-205ENSMUST00000173903 3054 ntAPPRIS ALT2 TSL 5 BASIC10.43□□□□□ -0.74
Hmgb3O54879 Olfr569-202ENSMUST00000217024 4741 ntAPPRIS P1 TSL 5 BASIC10.43□□□□□ -0.74
Hmgb3O54879 Ehmt1-203ENSMUST00000102938 4680 ntAPPRIS ALT2 TSL 1 (best) BASIC10.43□□□□□ -0.74
Hmgb3O54879 Prkar1b-202ENSMUST00000110889 2457 ntTSL 5 BASIC10.43□□□□□ -0.74
Hmgb3O54879 Ralgps2-207ENSMUST00000188656 2481 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
Hmgb3O54879 Ubl4b-201ENSMUST00000052853 1387 ntAPPRIS P1 BASIC10.43□□□□□ -0.74
Hmgb3O54879 Kcna10-201ENSMUST00000055064 1913 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Hmgb3O54879 Cadm2-201ENSMUST00000114292 9564 ntAPPRIS P3 TSL 1 (best) BASIC10.43□□□□□ -0.74
Hmgb3O54879 Kcnj5-203ENSMUST00000216033 2440 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
Hmgb3O54879 4933439K11Rik-203ENSMUST00000169111 1869 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
Hmgb3O54879 Il17rd-201ENSMUST00000035336 8280 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Hmgb3O54879 Zfp433-202ENSMUST00000200889 2384 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Hmgb3O54879 Gm32687-201ENSMUST00000220314 2379 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Hmgb3O54879 Olfm2-201ENSMUST00000034692 1836 ntAPPRIS P2 TSL 1 (best) BASIC10.43□□□□□ -0.74
Hmgb3O54879 Gm11505-201ENSMUST00000130442 737 ntTSL 3 BASIC10.43□□□□□ -0.74
Hmgb3O54879 Nptn-211ENSMUST00000177064 582 ntTSL 5 BASIC10.43□□□□□ -0.74
Hmgb3O54879 Gm27772-201ENSMUST00000184900 187 ntBASIC10.43□□□□□ -0.74
Hmgb3O54879 Higd1a-206ENSMUST00000215300 605 ntAPPRIS P1 TSL 3 BASIC10.43□□□□□ -0.74
Hmgb3O54879 Gm17870-201ENSMUST00000219489 1174 ntBASIC10.43□□□□□ -0.74
Hmgb3O54879 Prtn3-201ENSMUST00000006679 1025 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Hmgb3O54879 Gm648-201ENSMUST00000081133 1040 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Hmgb3O54879 Kif1a-204ENSMUST00000171796 8206 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
Hmgb3O54879 Gm11732-201ENSMUST00000151381 1742 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
Hmgb3O54879 Gm15222-202ENSMUST00000228667 1726 ntBASIC10.43□□□□□ -0.74
Hmgb3O54879 Iqcc-201ENSMUST00000046675 2639 ntAPPRIS P2 TSL 2 BASIC10.43□□□□□ -0.74
Hmgb3O54879 Btnl2-202ENSMUST00000178562 2563 ntAPPRIS ALT2 TSL 5 BASIC10.43□□□□□ -0.74
Hmgb3O54879 Btnl2-201ENSMUST00000025198 2564 ntAPPRIS P2 TSL 1 (best) BASIC10.43□□□□□ -0.74
Hmgb3O54879 AC159314.1-201ENSMUST00000216917 3485 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
Hmgb3O54879 Ndrg2-201ENSMUST00000004673 2099 ntAPPRIS P3 TSL 1 (best) BASIC10.43□□□□□ -0.74
Hmgb3O54879 Trpc7-208ENSMUST00000174457 2424 ntTSL 5 BASIC10.43□□□□□ -0.74
Retrieved 100 of 76,532 protein–RNA pairs in 156.5 ms