Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Fbxo44-208ENSMUST00000167160 1572 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Ddx56Q9D0R4 Sh3bp5l-201ENSMUST00000073128 2977 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Ddx56Q9D0R4 Mat2b-202ENSMUST00000101347 2053 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Ddx56Q9D0R4 Fam198a-202ENSMUST00000213773 2088 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Ddx56Q9D0R4 Eif1ax-201ENSMUST00000087143 5172 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Ddx56Q9D0R4 Gm8228-201ENSMUST00000189949 2192 ntBASIC13.31□□□□□ -0.28
Ddx56Q9D0R4 Slc33a1-201ENSMUST00000029402 3150 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Ddx56Q9D0R4 Pdss2-202ENSMUST00000159139 1467 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Ddx56Q9D0R4 Capn5-202ENSMUST00000107112 2232 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Ddx56Q9D0R4 Atp8a1-201ENSMUST00000037380 8178 ntAPPRIS P4 TSL 1 (best) BASIC13.31□□□□□ -0.28
Ddx56Q9D0R4 Pdp1-203ENSMUST00000108297 4201 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
Ddx56Q9D0R4 Atp5d-202ENSMUST00000105366 781 ntTSL 2 BASIC13.31□□□□□ -0.28
Ddx56Q9D0R4 Gm13492-201ENSMUST00000119772 665 ntBASIC13.31□□□□□ -0.28
Ddx56Q9D0R4 Adamtsl1-204ENSMUST00000120678 977 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Ddx56Q9D0R4 Gm5863-201ENSMUST00000121760 1008 ntBASIC13.31□□□□□ -0.28
Ddx56Q9D0R4 Gm16194-204ENSMUST00000141797 475 ntTSL 3 BASIC13.31□□□□□ -0.28
Ddx56Q9D0R4 Asgr1-201ENSMUST00000018699 1259 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
Ddx56Q9D0R4 Gm45784-201ENSMUST00000188360 142 ntBASIC13.31□□□□□ -0.28
Ddx56Q9D0R4 2010310C07Rik-202ENSMUST00000190889 842 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Ddx56Q9D0R4 Gm18187-201ENSMUST00000196476 984 ntBASIC13.31□□□□□ -0.28
Ddx56Q9D0R4 Atp6v0c-201ENSMUST00000024932 1183 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Ddx56Q9D0R4 1500011B03Rik-201ENSMUST00000061251 579 ntAPPRIS P5 TSL 1 (best) BASIC13.31□□□□□ -0.28
Ddx56Q9D0R4 Dll1-201ENSMUST00000014917 3581 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Ddx56Q9D0R4 Arhgap33-207ENSMUST00000208538 4372 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
Ddx56Q9D0R4 Clcn3-201ENSMUST00000004430 4175 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Ddx56Q9D0R4 Tgm1-202ENSMUST00000168729 2852 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
Ddx56Q9D0R4 Gm10578-202ENSMUST00000211070 2876 ntTSL 2 BASIC13.31□□□□□ -0.28
Ddx56Q9D0R4 B230209E15Rik-201ENSMUST00000209115 1597 ntTSL 5 BASIC13.31□□□□□ -0.28
Ddx56Q9D0R4 Cnn1-201ENSMUST00000001384 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Ddx56Q9D0R4 Kiss1r-201ENSMUST00000045529 3163 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Ddx56Q9D0R4 Gm5106-201ENSMUST00000181058 1334 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Ddx56Q9D0R4 Gm8793-201ENSMUST00000183069 1303 ntBASIC13.31□□□□□ -0.28
Ddx56Q9D0R4 Gm43579-201ENSMUST00000202387 1307 ntBASIC13.31□□□□□ -0.28
Ddx56Q9D0R4 Padi2-201ENSMUST00000030765 4774 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Ddx56Q9D0R4 Cckar-201ENSMUST00000031093 2930 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Ddx56Q9D0R4 5830411N06Rik-202ENSMUST00000093984 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Ddx56Q9D0R4 Smug1-201ENSMUST00000064067 3281 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
Ddx56Q9D0R4 Acap1-201ENSMUST00000001631 2482 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Ddx56Q9D0R4 Gm10544-202ENSMUST00000181887 1923 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Ddx56Q9D0R4 Grid2ip-203ENSMUST00000120825 3865 ntTSL 5 BASIC13.31□□□□□ -0.28
Ddx56Q9D0R4 Coro6-204ENSMUST00000102493 2804 ntAPPRIS ALT1 TSL 5 BASIC13.31□□□□□ -0.28
Ddx56Q9D0R4 Retreg1-206ENSMUST00000228306 1430 ntBASIC13.3□□□□□ -0.28
Ddx56Q9D0R4 Rassf8-201ENSMUST00000032388 1733 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx56Q9D0R4 Tktl2-201ENSMUST00000002025 2021 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
Ddx56Q9D0R4 Pcdhgb1-201ENSMUST00000192931 4723 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx56Q9D0R4 Myh7-204ENSMUST00000168485 6230 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx56Q9D0R4 Gprc5a-201ENSMUST00000050104 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx56Q9D0R4 Zfp641-201ENSMUST00000023722 4212 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx56Q9D0R4 Arid5a-204ENSMUST00000115032 4640 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx56Q9D0R4 Rbm39-203ENSMUST00000109587 2810 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx56Q9D0R4 Spert-202ENSMUST00000164082 1560 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
Ddx56Q9D0R4 Gm13226-201ENSMUST00000117838 404 ntBASIC13.3□□□□□ -0.28
Ddx56Q9D0R4 Gm14660-201ENSMUST00000119809 575 ntBASIC13.3□□□□□ -0.28
Ddx56Q9D0R4 Dgcr6-203ENSMUST00000143343 1280 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx56Q9D0R4 Meg3-208ENSMUST00000143847 706 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx56Q9D0R4 Nme9-202ENSMUST00000163199 1196 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
Ddx56Q9D0R4 Cradd-202ENSMUST00000217809 1115 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx56Q9D0R4 Gm4935-201ENSMUST00000221316 1198 ntBASIC13.3□□□□□ -0.28
Ddx56Q9D0R4 AC147241.1-201ENSMUST00000222173 785 ntTSL 3 BASIC13.3□□□□□ -0.28
Ddx56Q9D0R4 H2-Oa-201ENSMUST00000025192 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx56Q9D0R4 Gm10131-201ENSMUST00000080152 736 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
Ddx56Q9D0R4 Tacc3-202ENSMUST00000079534 2899 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx56Q9D0R4 Abhd14b-209ENSMUST00000216130 1624 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
Ddx56Q9D0R4 Gm5592-202ENSMUST00000206490 2623 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
Ddx56Q9D0R4 Itfg2-201ENSMUST00000001559 2320 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx56Q9D0R4 Ilvbl-212ENSMUST00000220430 2350 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx56Q9D0R4 Lcor-201ENSMUST00000067795 4810 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx56Q9D0R4 Cwc27-201ENSMUST00000022228 2071 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx56Q9D0R4 Smarcd2-203ENSMUST00000106843 2548 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx56Q9D0R4 Plekhg6-201ENSMUST00000042647 3299 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Ddx56Q9D0R4 Csrnp3-202ENSMUST00000112394 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx56Q9D0R4 Sirt3-201ENSMUST00000026559 1461 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx56Q9D0R4 Mast3-203ENSMUST00000211948 4251 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx56Q9D0R4 Calcoco1-201ENSMUST00000023818 2822 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx56Q9D0R4 Apol7c-201ENSMUST00000062562 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx56Q9D0R4 Spag9-202ENSMUST00000041956 7340 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx56Q9D0R4 Olfr533-204ENSMUST00000216258 2874 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
Ddx56Q9D0R4 C5ar1-201ENSMUST00000050770 2481 ntAPPRIS P1 TSL 3 BASIC13.29□□□□□ -0.28
Ddx56Q9D0R4 Ephb3-201ENSMUST00000006112 4185 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx56Q9D0R4 Gm13829-201ENSMUST00000119600 138 ntBASIC13.29□□□□□ -0.28
Ddx56Q9D0R4 Gm14286-201ENSMUST00000155674 464 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx56Q9D0R4 Cabp2-202ENSMUST00000159556 781 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx56Q9D0R4 Gm25927-201ENSMUST00000175058 117 ntBASIC13.29□□□□□ -0.28
Ddx56Q9D0R4 Oaz1-203ENSMUST00000179172 744 ntTSL 5 BASIC13.29□□□□□ -0.28
Ddx56Q9D0R4 Gm18584-201ENSMUST00000203098 964 ntBASIC13.29□□□□□ -0.28
Ddx56Q9D0R4 Gm35368-201ENSMUST00000209554 1244 ntTSL 5 BASIC13.29□□□□□ -0.28
Ddx56Q9D0R4 AC148335.1-201ENSMUST00000218778 818 ntTSL 5 BASIC13.29□□□□□ -0.28
Ddx56Q9D0R4 AC126253.1-201ENSMUST00000227974 824 ntBASIC13.29□□□□□ -0.28
Ddx56Q9D0R4 Oaz1-ps-201ENSMUST00000052440 681 ntBASIC13.29□□□□□ -0.28
Ddx56Q9D0R4 Olfr1368-201ENSMUST00000055298 1064 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
Ddx56Q9D0R4 Mrps21-201ENSMUST00000067298 488 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx56Q9D0R4 Prss2-201ENSMUST00000070380 815 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx56Q9D0R4 Fip1l1-201ENSMUST00000080164 4673 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx56Q9D0R4 Mdk-203ENSMUST00000090602 714 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
Ddx56Q9D0R4 Gm27196-201ENSMUST00000184787 2582 ntBASIC13.29□□□□□ -0.28
Ddx56Q9D0R4 Gpr19-203ENSMUST00000111932 1711 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx56Q9D0R4 Abca3-201ENSMUST00000039013 6476 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx56Q9D0R4 Gm45650-201ENSMUST00000211162 2169 ntTSL 5 BASIC13.29□□□□□ -0.28
Ddx56Q9D0R4 Cplx1-201ENSMUST00000046892 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx56Q9D0R4 Slc22a15-201ENSMUST00000106928 6573 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 60.4 ms