Protein–RNA interactions for Protein: P27548

Cd40lg, CD40 ligand, mousemouse

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd40lgP27548 Olfr1346-201ENSMUST00000056144 1051 ntAPPRIS P1 BASIC11.73□□□□□ -0.53
Cd40lgP27548 Trmt1l-201ENSMUST00000065625 2749 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Cd40lgP27548 Slc44a4-201ENSMUST00000007249 2261 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Cd40lgP27548 Gng8-201ENSMUST00000078182 910 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Cd40lgP27548 Nfic-202ENSMUST00000078185 3163 ntTSL 5 BASIC11.73□□□□□ -0.53
Cd40lgP27548 Cep89-201ENSMUST00000079414 2610 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Cd40lgP27548 Mtmr4-201ENSMUST00000092802 5525 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Cd40lgP27548 Tbx4-201ENSMUST00000000096 3011 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Cd40lgP27548 Kdm5c-201ENSMUST00000082177 5520 ntAPPRIS ALT2 TSL 5 BASIC11.73□□□□□ -0.53
Cd40lgP27548 Plekha6-203ENSMUST00000186917 4820 ntAPPRIS P2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Cd40lgP27548 Zfp783-204ENSMUST00000130490 4419 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Cd40lgP27548 Aldh6a1-201ENSMUST00000085192 3399 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Cd40lgP27548 Vrtn-202ENSMUST00000166772 3098 ntAPPRIS P1 TSL 3 BASIC11.73□□□□□ -0.53
Cd40lgP27548 Aifm2-203ENSMUST00000099706 3086 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Cd40lgP27548 Tmem230-203ENSMUST00000110164 2957 ntAPPRIS P1 TSL 2 BASIC11.73□□□□□ -0.53
Cd40lgP27548 Srrt-209ENSMUST00000197466 2972 ntAPPRIS ALT2 TSL 5 BASIC11.73□□□□□ -0.53
Cd40lgP27548 Tmem39a-201ENSMUST00000002924 2871 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Cd40lgP27548 Lrfn3-201ENSMUST00000046351 2886 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Cd40lgP27548 Olfml3-201ENSMUST00000029440 5465 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Cd40lgP27548 Mks1-201ENSMUST00000038196 2499 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cd40lgP27548 Kcnj5-201ENSMUST00000034533 4685 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cd40lgP27548 Ylpm1-202ENSMUST00000101202 4605 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
Cd40lgP27548 Zap70-201ENSMUST00000027291 2245 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cd40lgP27548 Cacna2d1-203ENSMUST00000101581 3879 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cd40lgP27548 Cacna2d1-206ENSMUST00000180204 3882 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Cd40lgP27548 Cacna2d1-209ENSMUST00000199704 3861 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Cd40lgP27548 Ripk4-202ENSMUST00000113743 3743 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Cd40lgP27548 Gm37660-201ENSMUST00000192754 1732 ntBASIC11.72□□□□□ -0.53
Cd40lgP27548 4933431E20Rik-209ENSMUST00000146337 1636 ntTSL 5 BASIC11.72□□□□□ -0.53
Cd40lgP27548 Fmo1-202ENSMUST00000111518 1506 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Cd40lgP27548 Art3-206ENSMUST00000120416 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cd40lgP27548 Acot7-202ENSMUST00000075363 1457 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cd40lgP27548 Trav4-2-201ENSMUST00000103637 370 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
Cd40lgP27548 Gm12957-201ENSMUST00000117835 377 ntBASIC11.72□□□□□ -0.53
Cd40lgP27548 Gm11637-201ENSMUST00000120601 592 ntBASIC11.72□□□□□ -0.53
Cd40lgP27548 Gm17420-201ENSMUST00000164753 153 ntBASIC11.72□□□□□ -0.53
Cd40lgP27548 Asgr1-201ENSMUST00000018699 1259 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cd40lgP27548 1700120C14Rik-202ENSMUST00000187967 391 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Cd40lgP27548 Gm38297-201ENSMUST00000195122 1057 ntBASIC11.72□□□□□ -0.53
Cd40lgP27548 Myl10-202ENSMUST00000196068 911 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Cd40lgP27548 Myl10-203ENSMUST00000196436 598 ntTSL 3 BASIC11.72□□□□□ -0.53
Cd40lgP27548 Ier3-201ENSMUST00000003635 1131 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cd40lgP27548 Otud6a-201ENSMUST00000060241 873 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
Cd40lgP27548 Ifitm10-202ENSMUST00000084412 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cd40lgP27548 Map2k4-201ENSMUST00000046963 3695 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cd40lgP27548 Nexmif-202ENSMUST00000087879 10891 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cd40lgP27548 Pla2g5-204ENSMUST00000102513 2289 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
Cd40lgP27548 Rtkn2-203ENSMUST00000117086 2246 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cd40lgP27548 Gm20700-201ENSMUST00000176749 2206 ntTSL 3 BASIC11.72□□□□□ -0.53
Cd40lgP27548 B230206H07Rik-202ENSMUST00000134845 3269 ntTSL 5 BASIC11.72□□□□□ -0.53
Cd40lgP27548 Scamp5-201ENSMUST00000046587 3225 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cd40lgP27548 C030005K06Rik-201ENSMUST00000129164 2076 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Cd40lgP27548 Rnf224-201ENSMUST00000091318 2021 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cd40lgP27548 Pde4a-203ENSMUST00000115458 2962 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cd40lgP27548 AC154725.1-201ENSMUST00000224826 1961 ntBASIC11.72□□□□□ -0.53
Cd40lgP27548 Map3k11-201ENSMUST00000004156 3801 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cd40lgP27548 Lgr5-201ENSMUST00000020350 4714 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cd40lgP27548 Saraf-201ENSMUST00000033933 1860 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cd40lgP27548 Bach2os-201ENSMUST00000126225 1661 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Cd40lgP27548 Clcn6-201ENSMUST00000030879 3306 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cd40lgP27548 Irf6-201ENSMUST00000076521 4113 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cd40lgP27548 Tmem63b-201ENSMUST00000113523 3284 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cd40lgP27548 Gm26878-201ENSMUST00000181778 1644 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Cd40lgP27548 Gpr139-201ENSMUST00000084650 4843 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cd40lgP27548 Ncoa6-203ENSMUST00000109670 7101 ntAPPRIS P2 TSL 5 BASIC11.71□□□□□ -0.53
Cd40lgP27548 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.53
Cd40lgP27548 Rfx7-203ENSMUST00000183372 1457 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Cd40lgP27548 5330426L24Rik-201ENSMUST00000200008 2175 ntBASIC11.71□□□□□ -0.53
Cd40lgP27548 Trim27-205ENSMUST00000221464 1400 ntTSL 5 BASIC11.71□□□□□ -0.53
Cd40lgP27548 Skp1a-201ENSMUST00000037324 1440 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cd40lgP27548 Otof-202ENSMUST00000114747 6881 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Cd40lgP27548 Gm9200-201ENSMUST00000118513 1354 ntBASIC11.71□□□□□ -0.53
Cd40lgP27548 BC039966-201ENSMUST00000141582 1371 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Cd40lgP27548 Plekhm1-201ENSMUST00000041272 5968 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cd40lgP27548 Rps13-203ENSMUST00000205490 1317 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Cd40lgP27548 H2-DMb2-201ENSMUST00000041982 1347 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cd40lgP27548 Rin2-202ENSMUST00000110005 4641 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.53
Cd40lgP27548 Mslnl-201ENSMUST00000047098 2628 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cd40lgP27548 Cad-204ENSMUST00000201182 6529 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Cd40lgP27548 Hus1b-201ENSMUST00000102943 1187 ntAPPRIS P1 BASIC11.71□□□□□ -0.53
Cd40lgP27548 Dctn6-202ENSMUST00000117243 962 ntTSL 3 BASIC11.71□□□□□ -0.53
Cd40lgP27548 Cdk4-202ENSMUST00000120226 714 ntTSL 5 BASIC11.71□□□□□ -0.53
Cd40lgP27548 Isg20-204ENSMUST00000121645 1087 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Cd40lgP27548 Mir7085-201ENSMUST00000184353 66 ntBASIC11.71□□□□□ -0.53
Cd40lgP27548 Prr29-204ENSMUST00000188561 592 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.53
Cd40lgP27548 Gm28693-202ENSMUST00000190758 331 ntBASIC11.71□□□□□ -0.53
Cd40lgP27548 Prr29-206ENSMUST00000190795 822 ntTSL 5 BASIC11.71□□□□□ -0.53
Cd40lgP27548 Ube2f-210ENSMUST00000191368 1110 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cd40lgP27548 Ssr2-202ENSMUST00000192495 620 ntTSL 5 BASIC11.71□□□□□ -0.53
Cd40lgP27548 CT030161.3-201ENSMUST00000218235 367 ntTSL 3 BASIC11.71□□□□□ -0.53
Cd40lgP27548 Lrp8os1-201ENSMUST00000030352 672 ntTSL 5 BASIC11.71□□□□□ -0.53
Cd40lgP27548 Brk1-201ENSMUST00000035725 1095 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cd40lgP27548 Rpl10-202ENSMUST00000074085 855 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cd40lgP27548 Dnpep-209ENSMUST00000187836 1862 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cd40lgP27548 Cpeb1-201ENSMUST00000098331 3111 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cd40lgP27548 Myh6-201ENSMUST00000081857 6113 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cd40lgP27548 Gatad2a-206ENSMUST00000212478 3622 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.54
Cd40lgP27548 Pou4f3-201ENSMUST00000025374 2360 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Cd40lgP27548 Calr3-201ENSMUST00000019876 1769 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Cd40lgP27548 Elk1-201ENSMUST00000009550 3548 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 28 ms