Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Zfp286-211ENSMUST00000207597 1668 ntTSL 5 BASIC14.94□□□□□ -0.02
Col3a1P08121 Hmga2-203ENSMUST00000159699 3810 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Col3a1P08121 BC003331-205ENSMUST00000111913 3273 ntAPPRIS P3 TSL 5 BASIC14.94□□□□□ -0.02
Col3a1P08121 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
Col3a1P08121 Mettl8-202ENSMUST00000100037 2254 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col3a1P08121 Lman2-201ENSMUST00000021940 4315 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col3a1P08121 Unc119b-201ENSMUST00000060798 3659 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col3a1P08121 Hspa9-201ENSMUST00000025217 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col3a1P08121 Lsp1-205ENSMUST00000105968 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col3a1P08121 Gm10714-201ENSMUST00000131346 874 ntTSL 2 BASIC14.94□□□□□ -0.02
Col3a1P08121 Retn-202ENSMUST00000169234 1139 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
Col3a1P08121 Gm37835-201ENSMUST00000193305 361 ntBASIC14.94□□□□□ -0.02
Col3a1P08121 Gm33222-201ENSMUST00000193725 654 ntTSL 3 BASIC14.94□□□□□ -0.02
Col3a1P08121 AC153954.1-201ENSMUST00000216959 255 ntBASIC14.94□□□□□ -0.02
Col3a1P08121 Tnfrsf19-203ENSMUST00000224371 1239 ntAPPRIS ALT2 BASIC14.94□□□□□ -0.02
Col3a1P08121 Mill2-201ENSMUST00000072386 1121 ntAPPRIS P4 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col3a1P08121 Washc5-201ENSMUST00000022976 4033 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col3a1P08121 Luc7l-201ENSMUST00000025023 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col3a1P08121 Gtf2ird1-212ENSMUST00000200944 3133 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Col3a1P08121 Ddx19b-202ENSMUST00000065784 3104 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Col3a1P08121 Gart-201ENSMUST00000023684 3518 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col3a1P08121 Arid4b-204ENSMUST00000110536 5783 ntTSL 5 BASIC14.94□□□□□ -0.02
Col3a1P08121 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col3a1P08121 Uck2-202ENSMUST00000053686 4731 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Col3a1P08121 Cep85-201ENSMUST00000040271 3893 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col3a1P08121 AC171277.1-201ENSMUST00000216902 1441 ntBASIC14.93□□□□□ -0.02
Col3a1P08121 Dab1-203ENSMUST00000106830 5278 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col3a1P08121 Adcyap1r1-203ENSMUST00000165786 1745 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
Col3a1P08121 C130026L21Rik-201ENSMUST00000064930 2472 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Col3a1P08121 Adcy5-201ENSMUST00000114913 7007 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col3a1P08121 D930032P07Rik-201ENSMUST00000181393 1314 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Col3a1P08121 Adamts20-201ENSMUST00000035342 6027 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col3a1P08121 Adamts17-201ENSMUST00000098382 6025 ntAPPRIS P2 TSL 5 BASIC14.93□□□□□ -0.02
Col3a1P08121 Ripor2-205ENSMUST00000110384 5608 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col3a1P08121 Klk7-201ENSMUST00000032955 1895 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col3a1P08121 Sipa1l3-207ENSMUST00000182484 2420 ntTSL 5 BASIC14.93□□□□□ -0.02
Col3a1P08121 Atp2b3-202ENSMUST00000088429 4483 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col3a1P08121 Exosc1-202ENSMUST00000112123 1499 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Col3a1P08121 AC123834.1-201ENSMUST00000225346 2043 ntBASIC14.93□□□□□ -0.02
Col3a1P08121 Ubn2-201ENSMUST00000039127 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col3a1P08121 Gm11450-201ENSMUST00000121144 333 ntBASIC14.93□□□□□ -0.02
Col3a1P08121 Pabpc1l2a-ps-201ENSMUST00000128361 513 ntBASIC14.93□□□□□ -0.02
Col3a1P08121 Gm44136-201ENSMUST00000203819 1106 ntBASIC14.93□□□□□ -0.02
Col3a1P08121 Gm35060-201ENSMUST00000207669 825 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
Col3a1P08121 C230062I16Rik-204ENSMUST00000208342 643 ntTSL 3 BASIC14.93□□□□□ -0.02
Col3a1P08121 Gm44934-201ENSMUST00000208941 238 ntTSL 5 BASIC14.93□□□□□ -0.02
Col3a1P08121 8030455M16Rik-201ENSMUST00000213014 902 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Col3a1P08121 Sftpd-201ENSMUST00000077136 1275 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col3a1P08121 Mrpl18-201ENSMUST00000079121 1219 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col3a1P08121 Gm29724-201ENSMUST00000214688 3062 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Col3a1P08121 Slc6a17-208ENSMUST00000169449 6322 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col3a1P08121 Slc6a17-201ENSMUST00000029499 6308 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col3a1P08121 Ccdc30-202ENSMUST00000063642 2534 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col3a1P08121 AC159308.2-201ENSMUST00000213592 2325 ntBASIC14.93□□□□□ -0.02
Col3a1P08121 Sh3bp5l-202ENSMUST00000116376 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col3a1P08121 Angel2-202ENSMUST00000066632 3714 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Col3a1P08121 Zmym3-206ENSMUST00000120107 5882 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
Col3a1P08121 Ebp-201ENSMUST00000033509 1743 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col3a1P08121 1700003D09Rik-201ENSMUST00000141929 1389 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Col3a1P08121 Parp2-201ENSMUST00000036126 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col3a1P08121 Pcdha2-201ENSMUST00000115662 5361 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col3a1P08121 Elavl3-201ENSMUST00000003501 5014 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col3a1P08121 Nxf1-201ENSMUST00000010241 2326 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col3a1P08121 Gm17518-201ENSMUST00000181232 1346 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Col3a1P08121 Rnf133-201ENSMUST00000063548 1308 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Col3a1P08121 Atg7-210ENSMUST00000182793 2459 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col3a1P08121 Galnt2-201ENSMUST00000034458 4113 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col3a1P08121 Comt-204ENSMUST00000165430 1978 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
Col3a1P08121 Ace-202ENSMUST00000001964 2418 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Col3a1P08121 Gm45278-201ENSMUST00000209650 2414 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Col3a1P08121 Bin3-201ENSMUST00000022680 1767 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col3a1P08121 Gm13035-201ENSMUST00000117496 342 ntBASIC14.92□□□□□ -0.02
Col3a1P08121 Gm11941-201ENSMUST00000119904 610 ntBASIC14.92□□□□□ -0.02
Col3a1P08121 Nr1h2-ps-201ENSMUST00000183844 478 ntBASIC14.92□□□□□ -0.02
Col3a1P08121 Gm7467-201ENSMUST00000185173 652 ntBASIC14.92□□□□□ -0.02
Col3a1P08121 Gm28778-201ENSMUST00000190734 785 ntAPPRIS P1 TSL 3 BASIC14.92□□□□□ -0.02
Col3a1P08121 Gm18711-201ENSMUST00000199341 750 ntBASIC14.92□□□□□ -0.02
Col3a1P08121 Mir219a-1-201ENSMUST00000083621 110 ntBASIC14.92□□□□□ -0.02
Col3a1P08121 Frmd4b-203ENSMUST00000113355 4913 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Col3a1P08121 Gm9962-202ENSMUST00000186595 1417 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Col3a1P08121 Tmeff2-201ENSMUST00000081851 3343 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col3a1P08121 Ampd2-202ENSMUST00000102637 3586 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col3a1P08121 Mark2-215ENSMUST00000168872 2124 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
Col3a1P08121 E230029C05Rik-202ENSMUST00000207458 2445 ntTSL 5 BASIC14.92□□□□□ -0.02
Col3a1P08121 Il12rb1-201ENSMUST00000000808 2873 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col3a1P08121 G3bp2-203ENSMUST00000167918 4232 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Col3a1P08121 Usp53-202ENSMUST00000197314 3586 ntTSL 5 BASIC14.91□□□□□ -0.02
Col3a1P08121 Nfe2l1-204ENSMUST00000107659 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col3a1P08121 Gm44942-201ENSMUST00000096093 2072 ntBASIC14.91□□□□□ -0.02
Col3a1P08121 Leprot-202ENSMUST00000106927 1754 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Col3a1P08121 Gm28719-201ENSMUST00000187779 1757 ntBASIC14.91□□□□□ -0.02
Col3a1P08121 Smarcb1-202ENSMUST00000121304 1622 ntAPPRIS ALT1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col3a1P08121 Phf13-201ENSMUST00000055688 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col3a1P08121 Tspyl3-201ENSMUST00000099194 3072 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
Col3a1P08121 Kcnj12-203ENSMUST00000108717 2463 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col3a1P08121 Gm11946-201ENSMUST00000123459 3941 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Col3a1P08121 Dnmt3b-206ENSMUST00000103151 3956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col3a1P08121 Ucp3-202ENSMUST00000107059 1260 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
Col3a1P08121 Rpl36-ps10-201ENSMUST00000117431 216 ntBASIC14.91□□□□□ -0.02
Col3a1P08121 Gm20426-201ENSMUST00000173657 440 ntBASIC14.91□□□□□ -0.02
Retrieved 100 of 76,532 protein–RNA pairs in 37.8 ms