Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Rpl29-201ENSMUST00000059802 710 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
Hmgb3O54879 Cxcl17-201ENSMUST00000074040 761 ntAPPRIS ALT2 TSL 5 BASIC10.46□□□□□ -0.73
Hmgb3O54879 Crxos-201ENSMUST00000098801 934 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
Hmgb3O54879 Haus7-201ENSMUST00000033737 1380 ntAPPRIS P4 TSL 1 (best) BASIC10.46□□□□□ -0.74
Hmgb3O54879 Camk2b-206ENSMUST00000101585 1650 ntTSL 5 BASIC10.46□□□□□ -0.74
Hmgb3O54879 Nop58-201ENSMUST00000027174 1713 ntAPPRIS ALT2 TSL 5 BASIC10.46□□□□□ -0.74
Hmgb3O54879 Gm42690-201ENSMUST00000197921 1836 ntBASIC10.46□□□□□ -0.74
Hmgb3O54879 Tspan13-201ENSMUST00000020896 1932 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
Hmgb3O54879 Hars2-201ENSMUST00000019287 2002 ntTSL 1 (best) BASIC10.46□□□□□ -0.74
Hmgb3O54879 Dchs2-201ENSMUST00000191829 10783 ntAPPRIS P1 TSL 5 BASIC10.46□□□□□ -0.74
Hmgb3O54879 Slc23a4-201ENSMUST00000044387 2175 ntTSL 1 (best) BASIC10.46□□□□□ -0.74
Hmgb3O54879 Capn5-202ENSMUST00000107112 2232 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
Hmgb3O54879 Gm8617-201ENSMUST00000118796 2222 ntBASIC10.46□□□□□ -0.74
Hmgb3O54879 Gm42840-201ENSMUST00000200303 2251 ntBASIC10.46□□□□□ -0.74
Hmgb3O54879 Atg7-210ENSMUST00000182793 2459 ntAPPRIS P3 TSL 1 (best) BASIC10.46□□□□□ -0.74
Hmgb3O54879 Ccdc114-201ENSMUST00000038720 2460 ntAPPRIS P2 TSL 1 (best) BASIC10.46□□□□□ -0.74
Hmgb3O54879 Ush1c-206ENSMUST00000154292 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC10.46□□□□□ -0.74
Hmgb3O54879 Clpx-201ENSMUST00000015501 2885 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
Hmgb3O54879 Slc22a5-201ENSMUST00000019044 3062 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
Hmgb3O54879 Mfsd9-201ENSMUST00000039672 3160 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
Hmgb3O54879 Kcnab2-201ENSMUST00000030768 3533 ntAPPRIS ALT1 TSL 1 (best) BASIC10.46□□□□□ -0.74
Hmgb3O54879 Rps6ka6-202ENSMUST00000082034 4170 ntAPPRIS P2 TSL 5 BASIC10.46□□□□□ -0.74
Hmgb3O54879 Gria4-202ENSMUST00000063508 5352 ntAPPRIS P3 TSL 1 (best) BASIC10.46□□□□□ -0.74
Hmgb3O54879 Scn5a-203ENSMUST00000120420 7536 ntAPPRIS ALT1 TSL 5 BASIC10.46□□□□□ -0.74
Hmgb3O54879 Rbm47-209ENSMUST00000201544 5211 ntAPPRIS P3 TSL 5 BASIC10.45□□□□□ -0.74
Hmgb3O54879 Dsc2-201ENSMUST00000039247 4630 ntAPPRIS P3 TSL 1 (best) BASIC10.45□□□□□ -0.74
Hmgb3O54879 Runx3-201ENSMUST00000056977 3884 ntAPPRIS P2 TSL 1 (best) BASIC10.45□□□□□ -0.74
Hmgb3O54879 Nsd3-208ENSMUST00000146919 3652 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
Hmgb3O54879 Adamts14-202ENSMUST00000120336 3645 ntAPPRIS ALT2 TSL 5 BASIC10.45□□□□□ -0.74
Hmgb3O54879 Rasgef1b-203ENSMUST00000146396 3339 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
Hmgb3O54879 Hspa9-201ENSMUST00000025217 3049 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Hmgb3O54879 Tmppe-201ENSMUST00000111820 2921 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Hmgb3O54879 Specc1-212ENSMUST00000202178 2932 ntTSL 5 BASIC10.45□□□□□ -0.74
Hmgb3O54879 Fam198b-202ENSMUST00000118853 6729 ntAPPRIS P1 TSL 5 BASIC10.45□□□□□ -0.74
Hmgb3O54879 Fxr1-204ENSMUST00000197694 2129 ntAPPRIS P1 TSL 5 BASIC10.45□□□□□ -0.74
Hmgb3O54879 Pfkfb3-213ENSMUST00000171188 2058 ntTSL 5 BASIC10.45□□□□□ -0.74
Hmgb3O54879 Gm37105-201ENSMUST00000192251 2085 ntBASIC10.45□□□□□ -0.74
Hmgb3O54879 Gm36970-201ENSMUST00000193688 1859 ntBASIC10.45□□□□□ -0.74
Hmgb3O54879 Cd300lf-203ENSMUST00000106562 1762 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
Hmgb3O54879 Gm8994-202ENSMUST00000204530 1573 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Hmgb3O54879 Tyw1-202ENSMUST00000044204 4698 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
Hmgb3O54879 Cd63-202ENSMUST00000105229 1043 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Hmgb3O54879 Wdr38-202ENSMUST00000112872 1194 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Hmgb3O54879 Gm12585-201ENSMUST00000117307 290 ntBASIC10.45□□□□□ -0.74
Hmgb3O54879 Izumo1r-203ENSMUST00000117620 1095 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
Hmgb3O54879 Gm13070-201ENSMUST00000146532 768 ntTSL 5 BASIC10.45□□□□□ -0.74
Hmgb3O54879 Banf1-202ENSMUST00000170010 742 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Hmgb3O54879 A930015D03Rik-201ENSMUST00000173900 1111 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
Hmgb3O54879 Rian-216ENSMUST00000183215 880 ntTSL 3 BASIC10.45□□□□□ -0.74
Hmgb3O54879 Gm37117-201ENSMUST00000194238 589 ntTSL 5 BASIC10.45□□□□□ -0.74
Hmgb3O54879 Gm44123-201ENSMUST00000204662 577 ntTSL 5 BASIC10.45□□□□□ -0.74
Hmgb3O54879 Gm5425-201ENSMUST00000214125 459 ntBASIC10.45□□□□□ -0.74
Hmgb3O54879 Cd63-204ENSMUST00000219317 1109 ntAPPRIS P1 TSL 5 BASIC10.45□□□□□ -0.74
Hmgb3O54879 Timm13-204ENSMUST00000219896 542 ntTSL 3 BASIC10.45□□□□□ -0.74
Hmgb3O54879 AC154846.1-201ENSMUST00000226278 862 ntBASIC10.45□□□□□ -0.74
Hmgb3O54879 Lce1b-201ENSMUST00000029531 647 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Hmgb3O54879 Gm8225-201ENSMUST00000090257 879 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Hmgb3O54879 Gm6594-201ENSMUST00000097278 288 ntAPPRIS P1 BASIC10.45□□□□□ -0.74
Hmgb3O54879 Pyroxd2-201ENSMUST00000076505 3119 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Hmgb3O54879 Cdh7-202ENSMUST00000112701 4945 ntAPPRIS P1 TSL 5 BASIC10.45□□□□□ -0.74
Hmgb3O54879 4833422C13Rik-202ENSMUST00000160385 2828 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
Hmgb3O54879 Esr1-201ENSMUST00000067086 4344 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Hmgb3O54879 Evi5l-208ENSMUST00000176825 3728 ntAPPRIS ALT2 TSL 5 BASIC10.45□□□□□ -0.74
Hmgb3O54879 Bicral-201ENSMUST00000040624 6579 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Hmgb3O54879 Rtn4-202ENSMUST00000078830 3615 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
Hmgb3O54879 Svil-203ENSMUST00000126977 7907 ntAPPRIS P3 TSL 5 BASIC10.45□□□□□ -0.74
Hmgb3O54879 Zfp462-202ENSMUST00000079605 4684 ntAPPRIS ALT2 TSL 5 BASIC10.45□□□□□ -0.74
Hmgb3O54879 Corin-202ENSMUST00000167460 4639 ntAPPRIS ALT2 TSL 1 (best) BASIC10.45□□□□□ -0.74
Hmgb3O54879 Reep2-201ENSMUST00000043484 1926 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Hmgb3O54879 Cyp2b10-201ENSMUST00000005477 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC10.44□□□□□ -0.74
Hmgb3O54879 Cops4-201ENSMUST00000045993 1755 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Hmgb3O54879 Kcna1-201ENSMUST00000055168 4031 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Hmgb3O54879 Dnaic2-201ENSMUST00000069325 2874 ntAPPRIS P1 TSL 5 BASIC10.44□□□□□ -0.74
Hmgb3O54879 Nxph1-202ENSMUST00000160300 2815 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Hmgb3O54879 Wbp1l-201ENSMUST00000099376 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC10.44□□□□□ -0.74
Hmgb3O54879 Apol9b-201ENSMUST00000109775 1545 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Hmgb3O54879 Pcna-201ENSMUST00000028817 1518 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Hmgb3O54879 Ctgf-203ENSMUST00000176228 2490 ntTSL 2 BASIC10.44□□□□□ -0.74
Hmgb3O54879 Gng7-203ENSMUST00000117805 3382 ntAPPRIS ALT1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Hmgb3O54879 Vill-203ENSMUST00000126251 1411 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
Hmgb3O54879 Sik2-205ENSMUST00000176663 4107 ntAPPRIS ALT2 TSL 5 BASIC10.44□□□□□ -0.74
Hmgb3O54879 Gm38569-201ENSMUST00000205476 2228 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
Hmgb3O54879 Mafk-202ENSMUST00000110836 3097 ntAPPRIS P1 TSL 5 BASIC10.44□□□□□ -0.74
Hmgb3O54879 Tcf4-205ENSMUST00000114980 2192 ntAPPRIS P1 TSL 5 BASIC10.44□□□□□ -0.74
Hmgb3O54879 Rph3al-204ENSMUST00000121287 2199 ntAPPRIS P1 TSL 5 BASIC10.44□□□□□ -0.74
Hmgb3O54879 Tnfrsf13b-202ENSMUST00000101103 750 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Hmgb3O54879 Gm22065-201ENSMUST00000103753 110 ntBASIC10.44□□□□□ -0.74
Hmgb3O54879 Gm22066-201ENSMUST00000103761 110 ntBASIC10.44□□□□□ -0.74
Hmgb3O54879 Gm24932-201ENSMUST00000103763 110 ntBASIC10.44□□□□□ -0.74
Hmgb3O54879 Gm24115-201ENSMUST00000103799 110 ntBASIC10.44□□□□□ -0.74
Hmgb3O54879 Gm22190-201ENSMUST00000103827 110 ntBASIC10.44□□□□□ -0.74
Hmgb3O54879 Gm22191-201ENSMUST00000103831 110 ntBASIC10.44□□□□□ -0.74
Hmgb3O54879 Gm24721-201ENSMUST00000103849 110 ntBASIC10.44□□□□□ -0.74
Hmgb3O54879 Gm28018-201ENSMUST00000103869 110 ntBASIC10.44□□□□□ -0.74
Hmgb3O54879 Gm26399-201ENSMUST00000103937 110 ntBASIC10.44□□□□□ -0.74
Hmgb3O54879 Pla2g2e-203ENSMUST00000105804 786 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Hmgb3O54879 Tomm5-204ENSMUST00000107810 639 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Hmgb3O54879 Cd99l2-204ENSMUST00000114587 973 ntAPPRIS ALT2 TSL 3 BASIC10.44□□□□□ -0.74
Hmgb3O54879 Acyp1-203ENSMUST00000117138 735 ntAPPRIS P1 TSL 2 BASIC10.44□□□□□ -0.74
Hmgb3O54879 Gm7820-201ENSMUST00000121012 1052 ntBASIC10.44□□□□□ -0.74
Retrieved 100 of 76,532 protein–RNA pairs in 229.2 ms