Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Duoxa2-201ENSMUST00000028656 1592 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Cdc40Q9DC48 Col14a1-201ENSMUST00000023053 6457 ntAPPRIS ALT1 TSL 5 BASIC11.81□□□□□ -0.52
Cdc40Q9DC48 Cacna1c-203ENSMUST00000112790 7631 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Cdc40Q9DC48 Arhgef2-229ENSMUST00000177303 3000 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
Cdc40Q9DC48 Rps3-202ENSMUST00000107096 952 ntTSL 3 BASIC11.81□□□□□ -0.52
Cdc40Q9DC48 Cbfa2t2-ps1-201ENSMUST00000117165 730 ntBASIC11.81□□□□□ -0.52
Cdc40Q9DC48 Gm12329-201ENSMUST00000120829 1007 ntBASIC11.81□□□□□ -0.52
Cdc40Q9DC48 Gm2231-201ENSMUST00000125661 612 ntBASIC11.81□□□□□ -0.52
Cdc40Q9DC48 Gm27501-201ENSMUST00000183599 107 ntBASIC11.81□□□□□ -0.52
Cdc40Q9DC48 Gm3961-201ENSMUST00000204425 994 ntBASIC11.81□□□□□ -0.52
Cdc40Q9DC48 Gm18935-201ENSMUST00000212692 664 ntBASIC11.81□□□□□ -0.52
Cdc40Q9DC48 Gm10608-202ENSMUST00000213924 676 ntBASIC11.81□□□□□ -0.52
Cdc40Q9DC48 Gm19309-201ENSMUST00000218295 205 ntBASIC11.81□□□□□ -0.52
Cdc40Q9DC48 Gm34466-201ENSMUST00000222218 505 ntTSL 2 BASIC11.81□□□□□ -0.52
Cdc40Q9DC48 Mrto4-201ENSMUST00000030513 930 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
Cdc40Q9DC48 Lats2-202ENSMUST00000038381 933 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Cdc40Q9DC48 Lcn10-201ENSMUST00000058912 1106 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Cdc40Q9DC48 Otud6a-201ENSMUST00000060241 873 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
Cdc40Q9DC48 Olfr521-201ENSMUST00000098263 967 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
Cdc40Q9DC48 Olfr1209-201ENSMUST00000099809 933 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
Cdc40Q9DC48 Pianp-207ENSMUST00000162170 2053 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Cdc40Q9DC48 Vrtn-202ENSMUST00000166772 3098 ntAPPRIS P1 TSL 3 BASIC11.81□□□□□ -0.52
Cdc40Q9DC48 Mkl1-209ENSMUST00000149582 4366 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Cdc40Q9DC48 Sec23b-201ENSMUST00000028916 2779 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Cdc40Q9DC48 Ccr7-201ENSMUST00000103134 1978 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Cdc40Q9DC48 Gm26593-201ENSMUST00000181848 1970 ntTSL 5 BASIC11.81□□□□□ -0.52
Cdc40Q9DC48 Naaladl1-201ENSMUST00000044451 2491 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
Cdc40Q9DC48 Kcna6-202ENSMUST00000112242 3464 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
Cdc40Q9DC48 Gm26651-201ENSMUST00000181851 2325 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Cdc40Q9DC48 Mrps30-201ENSMUST00000022245 3319 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Cdc40Q9DC48 Eif4enif1-213ENSMUST00000179770 3676 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Cdc40Q9DC48 Tfe3-202ENSMUST00000079542 3163 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Cdc40Q9DC48 Dnmt1-203ENSMUST00000178110 5870 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Cdc40Q9DC48 Asap1-201ENSMUST00000023008 4580 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
Cdc40Q9DC48 Zc3h6-202ENSMUST00000110320 4916 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
Cdc40Q9DC48 Strip2-205ENSMUST00000151738 5281 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Cdc40Q9DC48 Scube2-201ENSMUST00000007423 3571 ntTSL 2 BASIC11.8□□□□□ -0.52
Cdc40Q9DC48 Nab1-204ENSMUST00000170269 1371 ntTSL 5 BASIC11.8□□□□□ -0.52
Cdc40Q9DC48 Pafah1b2-201ENSMUST00000172450 6873 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Cdc40Q9DC48 Sh3bp2-207ENSMUST00000179943 2935 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
Cdc40Q9DC48 Nrf1-209ENSMUST00000115209 2406 ntTSL 5 BASIC11.8□□□□□ -0.52
Cdc40Q9DC48 Efr3a-205ENSMUST00000173858 2848 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Cdc40Q9DC48 Tspan12-201ENSMUST00000031678 2490 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Cdc40Q9DC48 Kcnd3-201ENSMUST00000079169 2102 ntAPPRIS P4 TSL 1 (best) BASIC11.8□□□□□ -0.52
Cdc40Q9DC48 2610001J05Rik-203ENSMUST00000185219 1606 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
Cdc40Q9DC48 Glis2-201ENSMUST00000014447 3619 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Cdc40Q9DC48 Gm6023-201ENSMUST00000118217 606 ntBASIC11.8□□□□□ -0.52
Cdc40Q9DC48 Cdkn1a-202ENSMUST00000119901 748 ntAPPRIS P1 TSL 2 BASIC11.8□□□□□ -0.52
Cdc40Q9DC48 4930524O07Rik-201ENSMUST00000161822 1050 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Cdc40Q9DC48 Ptp4a3-202ENSMUST00000163582 3808 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Cdc40Q9DC48 Psme1-202ENSMUST00000172738 681 ntTSL 5 BASIC11.8□□□□□ -0.52
Cdc40Q9DC48 Hspb9-201ENSMUST00000017976 652 ntAPPRIS ALT2 BASIC11.8□□□□□ -0.52
Cdc40Q9DC48 Gm28693-202ENSMUST00000190758 331 ntBASIC11.8□□□□□ -0.52
Cdc40Q9DC48 Gm44364-201ENSMUST00000198368 141 ntBASIC11.8□□□□□ -0.52
Cdc40Q9DC48 AC148335.1-201ENSMUST00000218778 818 ntTSL 5 BASIC11.8□□□□□ -0.52
Cdc40Q9DC48 Tyms-ps-201ENSMUST00000219550 915 ntBASIC11.8□□□□□ -0.52
Cdc40Q9DC48 Gm4935-201ENSMUST00000221316 1198 ntBASIC11.8□□□□□ -0.52
Cdc40Q9DC48 Nsmce1-201ENSMUST00000033006 1120 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Cdc40Q9DC48 Brk1-201ENSMUST00000035725 1095 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Cdc40Q9DC48 Bak1-202ENSMUST00000078691 2387 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Cdc40Q9DC48 Rims3-202ENSMUST00000106283 6437 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
Cdc40Q9DC48 Cacna2d1-203ENSMUST00000101581 3879 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Cdc40Q9DC48 Cacna2d1-206ENSMUST00000180204 3882 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Cdc40Q9DC48 Arl14ep-201ENSMUST00000028536 3337 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Cdc40Q9DC48 Cog1-201ENSMUST00000018805 3935 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Cdc40Q9DC48 Shisa9-202ENSMUST00000170672 3421 ntAPPRIS P4 TSL 1 (best) BASIC11.8□□□□□ -0.52
Cdc40Q9DC48 Abca3-201ENSMUST00000039013 6476 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Cdc40Q9DC48 Bicra-201ENSMUST00000094821 5360 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
Cdc40Q9DC48 Unc5c-202ENSMUST00000106236 9646 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Cdc40Q9DC48 Ttc23l-201ENSMUST00000022857 1931 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Cdc40Q9DC48 Max-201ENSMUST00000082136 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Cdc40Q9DC48 Pprc1-201ENSMUST00000062322 5205 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Cdc40Q9DC48 Sipa1l2-204ENSMUST00000212987 6690 ntAPPRIS P2 TSL 5 BASIC11.79□□□□□ -0.52
Cdc40Q9DC48 Napsa-201ENSMUST00000002274 1560 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Cdc40Q9DC48 Abo-201ENSMUST00000102900 1779 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Cdc40Q9DC48 Prpf8-201ENSMUST00000018449 7442 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Cdc40Q9DC48 Ppfia4-205ENSMUST00000189361 5238 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
Cdc40Q9DC48 Fam71f1-203ENSMUST00000164560 1411 ntAPPRIS P4 TSL 1 (best) BASIC11.79□□□□□ -0.52
Cdc40Q9DC48 BC003331-205ENSMUST00000111913 3273 ntAPPRIS P3 TSL 5 BASIC11.79□□□□□ -0.52
Cdc40Q9DC48 Rbm11-203ENSMUST00000114253 2699 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Cdc40Q9DC48 Armc7-201ENSMUST00000035240 2260 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Cdc40Q9DC48 Whamm-203ENSMUST00000209044 1879 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Cdc40Q9DC48 Gm27194-201ENSMUST00000175753 2936 ntBASIC11.79□□□□□ -0.52
Cdc40Q9DC48 Slitrk3-201ENSMUST00000059407 3587 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Cdc40Q9DC48 Gm15897-201ENSMUST00000117770 1486 ntBASIC11.79□□□□□ -0.52
Cdc40Q9DC48 Lrrc8c-201ENSMUST00000067924 6976 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Cdc40Q9DC48 A430005L14Rik-202ENSMUST00000105645 977 ntTSL 3 BASIC11.79□□□□□ -0.52
Cdc40Q9DC48 Timm10-202ENSMUST00000111631 564 ntAPPRIS P1 TSL 3 BASIC11.79□□□□□ -0.52
Cdc40Q9DC48 Fam71f2-201ENSMUST00000115286 1180 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Cdc40Q9DC48 Gm12539-201ENSMUST00000121549 1098 ntBASIC11.79□□□□□ -0.52
Cdc40Q9DC48 Gm16479-201ENSMUST00000121706 932 ntBASIC11.79□□□□□ -0.52
Cdc40Q9DC48 Mypopos-201ENSMUST00000124897 560 ntTSL 3 BASIC11.79□□□□□ -0.52
Cdc40Q9DC48 Men1-210ENSMUST00000166909 295 ntTSL 3 BASIC11.79□□□□□ -0.52
Cdc40Q9DC48 Cd180-203ENSMUST00000170878 842 ntTSL 3 BASIC11.79□□□□□ -0.52
Cdc40Q9DC48 Cd180-205ENSMUST00000172138 518 ntTSL 2 BASIC11.79□□□□□ -0.52
Cdc40Q9DC48 1700120C18Rik-201ENSMUST00000182952 985 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Cdc40Q9DC48 Gm27243-201ENSMUST00000183964 521 ntBASIC11.79□□□□□ -0.52
Cdc40Q9DC48 Gm38411-201ENSMUST00000197971 941 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Cdc40Q9DC48 Ighv8-10-201ENSMUST00000199579 358 ntBASIC11.79□□□□□ -0.52
Cdc40Q9DC48 CT033793.1-201ENSMUST00000216883 565 ntTSL 5 BASIC11.79□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 64.9 ms