Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Stx18-203ENSMUST00000114126 3002 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Ddx56Q9D0R4 Nsg2-203ENSMUST00000109409 641 ntTSL 2 BASIC13.34□□□□□ -0.27
Ddx56Q9D0R4 R3hdml-201ENSMUST00000109416 1094 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
Ddx56Q9D0R4 Kxd1-204ENSMUST00000121623 884 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
Ddx56Q9D0R4 Gm13394-201ENSMUST00000121658 1000 ntBASIC13.34□□□□□ -0.27
Ddx56Q9D0R4 Drap1-210ENSMUST00000148219 727 ntTSL 3 BASIC13.34□□□□□ -0.27
Ddx56Q9D0R4 Pfdn6-205ENSMUST00000174426 396 ntTSL 2 BASIC13.34□□□□□ -0.27
Ddx56Q9D0R4 Otx2os1-202ENSMUST00000183803 743 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Ddx56Q9D0R4 Asb1-206ENSMUST00000188879 1299 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Ddx56Q9D0R4 0610005C13Rik-209ENSMUST00000211209 974 ntTSL 2 BASIC13.34□□□□□ -0.27
Ddx56Q9D0R4 AC169036.1-201ENSMUST00000227994 296 ntBASIC13.34□□□□□ -0.27
Ddx56Q9D0R4 Gm10371-202ENSMUST00000228010 1081 ntBASIC13.34□□□□□ -0.27
Ddx56Q9D0R4 Rpl18a-201ENSMUST00000054220 1260 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Ddx56Q9D0R4 Fam241b-202ENSMUST00000064050 1096 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
Ddx56Q9D0R4 Cdc26-201ENSMUST00000084525 819 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Ddx56Q9D0R4 Gm10244-201ENSMUST00000090237 830 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Ddx56Q9D0R4 Kxd1-201ENSMUST00000093456 1216 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Ddx56Q9D0R4 B230118H07Rik-202ENSMUST00000099682 895 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
Ddx56Q9D0R4 C2cd4c-201ENSMUST00000059699 6729 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Ddx56Q9D0R4 Klhl18-201ENSMUST00000068025 4530 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Ddx56Q9D0R4 Xndc1-201ENSMUST00000094130 2298 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Ddx56Q9D0R4 Cdk7-201ENSMUST00000091299 1988 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Ddx56Q9D0R4 Ppp2r5c-201ENSMUST00000084985 1847 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
Ddx56Q9D0R4 Pigq-201ENSMUST00000026823 3173 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
Ddx56Q9D0R4 Zfp862-ps-204ENSMUST00000204484 6065 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Ddx56Q9D0R4 Xkr8-201ENSMUST00000045550 4245 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Ddx56Q9D0R4 Tmem104-202ENSMUST00000100235 4561 ntAPPRIS ALT1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Ddx56Q9D0R4 Tmem104-201ENSMUST00000061450 4564 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Ddx56Q9D0R4 Rab11fip1-201ENSMUST00000033878 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Ddx56Q9D0R4 Sufu-204ENSMUST00000120778 1850 ntTSL 2 BASIC13.33□□□□□ -0.27
Ddx56Q9D0R4 Usp20-211ENSMUST00000170476 4970 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Ddx56Q9D0R4 Sltm-206ENSMUST00000216816 3755 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.27
Ddx56Q9D0R4 Ankrd17-201ENSMUST00000014421 10458 ntAPPRIS P4 TSL 5 BASIC13.33□□□□□ -0.27
Ddx56Q9D0R4 Akr1b3-201ENSMUST00000102980 1387 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Ddx56Q9D0R4 Tmem80-204ENSMUST00000128906 1387 ntTSL 2 BASIC13.33□□□□□ -0.27
Ddx56Q9D0R4 Ntng1-208ENSMUST00000133268 5587 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Ddx56Q9D0R4 Chst4-201ENSMUST00000109222 1942 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Ddx56Q9D0R4 Gpr35-205ENSMUST00000186298 2647 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Ddx56Q9D0R4 Myo18a-202ENSMUST00000092884 5117 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
Ddx56Q9D0R4 Them4-201ENSMUST00000049822 1781 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Ddx56Q9D0R4 Cldn18-204ENSMUST00000136429 1409 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Ddx56Q9D0R4 Nrros-208ENSMUST00000143682 3577 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Ddx56Q9D0R4 4933434E20Rik-206ENSMUST00000160640 2510 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Ddx56Q9D0R4 Pex5-204ENSMUST00000112531 3075 ntAPPRIS ALT1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Ddx56Q9D0R4 Arl5c-202ENSMUST00000107563 823 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Ddx56Q9D0R4 Gm15703-201ENSMUST00000120250 880 ntBASIC13.33□□□□□ -0.28
Ddx56Q9D0R4 Treml1-201ENSMUST00000024792 1235 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Ddx56Q9D0R4 Chchd1-201ENSMUST00000071215 616 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Ddx56Q9D0R4 Gm17080-201ENSMUST00000087588 811 ntTSL 5 BASIC13.33□□□□□ -0.28
Ddx56Q9D0R4 Hipk3-201ENSMUST00000028600 7454 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Ddx56Q9D0R4 Emp1-206ENSMUST00000205156 2911 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Ddx56Q9D0R4 Tex10-201ENSMUST00000030030 3102 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Ddx56Q9D0R4 Pacrg-201ENSMUST00000041463 1475 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Ddx56Q9D0R4 Ugt1a2-201ENSMUST00000049289 2211 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Ddx56Q9D0R4 Ivns1abp-201ENSMUST00000023918 3511 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Ddx56Q9D0R4 Abcb6-201ENSMUST00000027396 2966 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Ddx56Q9D0R4 Scrn3-202ENSMUST00000112050 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Ddx56Q9D0R4 Osgepl1-201ENSMUST00000027265 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Ddx56Q9D0R4 2410131K14Rik-201ENSMUST00000049138 5649 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Ddx56Q9D0R4 Cd200r1-201ENSMUST00000057488 1892 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Ddx56Q9D0R4 Scube2-201ENSMUST00000007423 3571 ntTSL 2 BASIC13.33□□□□□ -0.28
Ddx56Q9D0R4 Strada-201ENSMUST00000007444 2099 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Ddx56Q9D0R4 Nmral1-203ENSMUST00000115851 1306 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Ddx56Q9D0R4 Stx4a-202ENSMUST00000121705 1316 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Ddx56Q9D0R4 Med4-201ENSMUST00000022705 1328 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Ddx56Q9D0R4 Zc3h4-202ENSMUST00000209289 5853 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
Ddx56Q9D0R4 Lrrc20-201ENSMUST00000049242 3216 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Ddx56Q9D0R4 C030034I22Rik-202ENSMUST00000188481 4231 ntBASIC13.33□□□□□ -0.28
Ddx56Q9D0R4 Wisp1-201ENSMUST00000005255 5097 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Ddx56Q9D0R4 Fam83h-201ENSMUST00000060807 4502 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Ddx56Q9D0R4 Fmo1-201ENSMUST00000046049 2388 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Ddx56Q9D0R4 Vrtn-201ENSMUST00000095551 3028 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Ddx56Q9D0R4 Urgcp-202ENSMUST00000093362 5089 ntAPPRIS P4 TSL 1 (best) BASIC13.32□□□□□ -0.28
Ddx56Q9D0R4 Bysl-201ENSMUST00000024783 3854 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Ddx56Q9D0R4 Ncald-211ENSMUST00000168992 3538 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Ddx56Q9D0R4 Nrf1-207ENSMUST00000115206 1879 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Ddx56Q9D0R4 Fgf8-203ENSMUST00000111924 630 ntTSL 5 BASIC13.32□□□□□ -0.28
Ddx56Q9D0R4 Mrpl2-203ENSMUST00000113430 991 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Ddx56Q9D0R4 Gm15824-201ENSMUST00000119516 955 ntBASIC13.32□□□□□ -0.28
Ddx56Q9D0R4 4933427G23Rik-202ENSMUST00000126393 544 ntBASIC13.32□□□□□ -0.28
Ddx56Q9D0R4 Rdh18-ps-201ENSMUST00000137395 944 ntBASIC13.32□□□□□ -0.28
Ddx56Q9D0R4 Rdh18-ps-202ENSMUST00000143917 953 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Ddx56Q9D0R4 4930524O07Rik-201ENSMUST00000161822 1050 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Ddx56Q9D0R4 Gm15494-202ENSMUST00000171665 451 ntTSL 2 BASIC13.32□□□□□ -0.28
Ddx56Q9D0R4 Rlbp1-202ENSMUST00000179243 2142 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Ddx56Q9D0R4 Gm27731-201ENSMUST00000185192 107 ntBASIC13.32□□□□□ -0.28
Ddx56Q9D0R4 Pced1c-ps-201ENSMUST00000187740 751 ntBASIC13.32□□□□□ -0.28
Ddx56Q9D0R4 Ssr2-202ENSMUST00000192495 620 ntTSL 5 BASIC13.32□□□□□ -0.28
Ddx56Q9D0R4 Coprs-202ENSMUST00000209371 601 ntTSL 3 BASIC13.32□□□□□ -0.28
Ddx56Q9D0R4 Gm45338-203ENSMUST00000210371 1009 ntTSL 5 BASIC13.32□□□□□ -0.28
Ddx56Q9D0R4 Clca2-203ENSMUST00000198993 2774 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Ddx56Q9D0R4 Ppara-202ENSMUST00000109422 3413 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Ddx56Q9D0R4 Nup205-204ENSMUST00000201374 6411 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Ddx56Q9D0R4 Dph2-201ENSMUST00000030265 2555 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Ddx56Q9D0R4 Tekt3-201ENSMUST00000035732 1748 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Ddx56Q9D0R4 Dlk1-204ENSMUST00000109843 1300 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Ddx56Q9D0R4 Gm7114-201ENSMUST00000190159 1789 ntBASIC13.32□□□□□ -0.28
Ddx56Q9D0R4 Tmem206-201ENSMUST00000027940 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Ddx56Q9D0R4 Plcg1-203ENSMUST00000109462 5107 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Ddx56Q9D0R4 Arhgap25-202ENSMUST00000101197 2493 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 44.1 ms