Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Mtr-201ENSMUST00000099856 8294 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Ddx28Q9CWT6 Serpinf2-202ENSMUST00000108437 2179 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Ddx28Q9CWT6 Adamtsl4-202ENSMUST00000117782 4036 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Ddx28Q9CWT6 Zfp772-201ENSMUST00000074455 2777 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Ddx28Q9CWT6 Nt5c3b-203ENSMUST00000107397 1348 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Ddx28Q9CWT6 1110028F18Rik-201ENSMUST00000183365 1341 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Ddx28Q9CWT6 Ano1-201ENSMUST00000033393 4585 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Ddx28Q9CWT6 7420426K07Rik-201ENSMUST00000098460 1504 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
Ddx28Q9CWT6 N6amt1-203ENSMUST00000118310 1700 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Ddx28Q9CWT6 Gm26747-201ENSMUST00000180597 1716 ntTSL 5 BASIC11.92□□□□□ -0.5
Ddx28Q9CWT6 Cyb561d1-202ENSMUST00000106654 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Ddx28Q9CWT6 Gm10561-201ENSMUST00000181563 1943 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Ddx28Q9CWT6 Tpm3-rs7-201ENSMUST00000072359 2147 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
Ddx28Q9CWT6 CT009757.3-201ENSMUST00000223367 2320 ntBASIC11.92□□□□□ -0.5
Ddx28Q9CWT6 Sfmbt1-206ENSMUST00000228006 3299 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
Ddx28Q9CWT6 Tspan12-201ENSMUST00000031678 2490 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Ddx28Q9CWT6 Ndrg2-201ENSMUST00000004673 2099 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
Ddx28Q9CWT6 Scn8a-208ENSMUST00000200963 5814 ntTSL 5 BASIC11.92□□□□□ -0.5
Ddx28Q9CWT6 Ppcs-202ENSMUST00000106316 954 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Ddx28Q9CWT6 Dhrs2-202ENSMUST00000165432 849 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
Ddx28Q9CWT6 Gm26894-201ENSMUST00000180828 1134 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Ddx28Q9CWT6 Gm8515-201ENSMUST00000194852 576 ntBASIC11.92□□□□□ -0.5
Ddx28Q9CWT6 Il31-203ENSMUST00000198901 984 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Ddx28Q9CWT6 Slc10a7-204ENSMUST00000209992 939 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Ddx28Q9CWT6 Gm6983-201ENSMUST00000214912 628 ntBASIC11.92□□□□□ -0.5
Ddx28Q9CWT6 AC153144.2-201ENSMUST00000221766 451 ntTSL 5 BASIC11.92□□□□□ -0.5
Ddx28Q9CWT6 AC140375.2-201ENSMUST00000225283 584 ntBASIC11.92□□□□□ -0.5
Ddx28Q9CWT6 Cby3-201ENSMUST00000052596 703 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Ddx28Q9CWT6 Phgr1-201ENSMUST00000061360 538 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Ddx28Q9CWT6 Cep89-201ENSMUST00000079414 2610 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Ddx28Q9CWT6 Oraov1-201ENSMUST00000033388 2015 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
Ddx28Q9CWT6 Gm12992-201ENSMUST00000124738 4493 ntTSL 5 BASIC11.92□□□□□ -0.5
Ddx28Q9CWT6 Banp-204ENSMUST00000170857 5444 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Ddx28Q9CWT6 Camk2d-216ENSMUST00000163226 4204 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Ddx28Q9CWT6 Dip2a-202ENSMUST00000105417 6383 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Ddx28Q9CWT6 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Ddx28Q9CWT6 Nfatc4-202ENSMUST00000172271 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Ddx28Q9CWT6 Ppp1r18-206ENSMUST00000190496 1395 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Ddx28Q9CWT6 Gm44089-201ENSMUST00000203624 1930 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Ddx28Q9CWT6 Triml2-203ENSMUST00000209872 1395 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Ddx28Q9CWT6 Gm34006-202ENSMUST00000216467 1918 ntTSL 2 BASIC11.92□□□□□ -0.5
Ddx28Q9CWT6 Max-201ENSMUST00000082136 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Ddx28Q9CWT6 Gm10176-201ENSMUST00000159707 2264 ntBASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 Rnf180-201ENSMUST00000069686 1728 ntAPPRIS P2 TSL 5 BASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 Taf9b-201ENSMUST00000055497 2633 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 Klhl14-202ENSMUST00000122333 4423 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 A930007I19Rik-203ENSMUST00000181726 2099 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 Pcsk7-201ENSMUST00000039059 3876 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 Kcnq1-202ENSMUST00000185383 1535 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 Gm5466-201ENSMUST00000119395 1890 ntBASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 Prr12-201ENSMUST00000057293 7023 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 Adcyap1r1-208ENSMUST00000172084 1344 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 2810407A14Rik-201ENSMUST00000069809 1699 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 Kifc1-204ENSMUST00000173492 2350 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 Ackr4-202ENSMUST00000076147 2389 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 Nup93-201ENSMUST00000079961 2707 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 Alpk3-201ENSMUST00000107348 6369 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 Kdm2b-203ENSMUST00000086200 4999 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 Gm10419-202ENSMUST00000196693 2530 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 Pced1b-201ENSMUST00000059433 2185 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 Usp3-205ENSMUST00000127569 5607 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 Nom1-201ENSMUST00000001611 9219 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 Cd33-201ENSMUST00000004728 1962 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 Rimbp2-204ENSMUST00000198941 6446 ntAPPRIS P3 TSL 2 BASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 Selenoh-202ENSMUST00000102647 654 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 Selenoh-203ENSMUST00000117299 747 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 Gm6161-201ENSMUST00000121942 1102 ntBASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 Atp6v1f-203ENSMUST00000149646 806 ntTSL 5 BASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 Gm23984-201ENSMUST00000157139 203 ntBASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 Hnrnpa3-207ENSMUST00000164947 1074 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 Gm6254-201ENSMUST00000168178 1072 ntBASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 Abhd14a-202ENSMUST00000171678 1262 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 Gm6153-201ENSMUST00000172004 1058 ntBASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 Gm9242-201ENSMUST00000177820 1074 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 Gm44397-201ENSMUST00000195950 113 ntBASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 Gm18018-201ENSMUST00000198273 408 ntBASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 Gm5641-202ENSMUST00000198699 1080 ntBASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 AC155286.1-201ENSMUST00000218632 448 ntBASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 CT573086.1-201ENSMUST00000227202 1074 ntBASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 AC134335.2-201ENSMUST00000227660 440 ntBASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 AF529169-201ENSMUST00000044491 7202 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 Hilpda-201ENSMUST00000054445 982 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 Dab2ip-207ENSMUST00000112992 6184 ntTSL 5 BASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 Nek4-201ENSMUST00000050171 2793 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 Prx-204ENSMUST00000125990 4298 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 Vmn1r24-201ENSMUST00000228097 1901 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 Def8-203ENSMUST00000093049 1909 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 Gpr179-201ENSMUST00000093942 9219 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 Siglecg-201ENSMUST00000005592 2569 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 Gm5385-201ENSMUST00000118988 1559 ntBASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 Map4k1-203ENSMUST00000208227 2720 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 Map4k1-201ENSMUST00000085835 2724 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 Gpr176-201ENSMUST00000039160 3899 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 Ildr1-203ENSMUST00000119464 2878 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 Tulp2-201ENSMUST00000024233 1749 ntAPPRIS P5 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 Fbf1-202ENSMUST00000106435 4651 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 Sh3bp5l-202ENSMUST00000116376 3016 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 Mfsd7a-201ENSMUST00000031455 2508 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 Rbm14-201ENSMUST00000006625 3165 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Ddx28Q9CWT6 Nek1-209ENSMUST00000211672 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 44.7 ms