Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Tbx4-203ENSMUST00000108047 3153 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Ccdc28bQ8CEG5 Apol7a-201ENSMUST00000010745 1431 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ccdc28bQ8CEG5 Chrdl1-202ENSMUST00000074660 4096 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ccdc28bQ8CEG5 Itpr3-201ENSMUST00000049308 8990 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ccdc28bQ8CEG5 Slc38a6-206ENSMUST00000140523 3032 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ccdc28bQ8CEG5 Mmab-201ENSMUST00000031560 3020 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ccdc28bQ8CEG5 Cacna1g-204ENSMUST00000107785 7523 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Ccdc28bQ8CEG5 Dusp6-204ENSMUST00000220291 2359 ntTSL 5 BASIC12.55□□□□□ -0.4
Ccdc28bQ8CEG5 Tmem266-202ENSMUST00000085754 4417 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ccdc28bQ8CEG5 Usp24-204ENSMUST00000165709 10594 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Ccdc28bQ8CEG5 Mir686-201ENSMUST00000102174 109 ntBASIC12.55□□□□□ -0.4
Ccdc28bQ8CEG5 Gdap1l1-203ENSMUST00000109421 1206 ntAPPRIS ALT1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ccdc28bQ8CEG5 Tmsb4x-201ENSMUST00000112172 768 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ccdc28bQ8CEG5 Cdpf1-202ENSMUST00000125947 706 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
Ccdc28bQ8CEG5 1700001C02Rik-203ENSMUST00000127815 660 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Ccdc28bQ8CEG5 Arf5-202ENSMUST00000169841 768 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Ccdc28bQ8CEG5 1700028J19Rik-203ENSMUST00000206686 1166 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ccdc28bQ8CEG5 4930408O17Rik-202ENSMUST00000222624 1131 ntTSL 5 BASIC12.55□□□□□ -0.4
Ccdc28bQ8CEG5 Ccdc172-201ENSMUST00000069419 1086 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ccdc28bQ8CEG5 Mrps21-202ENSMUST00000072587 405 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ccdc28bQ8CEG5 Tcf4-238ENSMUST00000201631 2660 ntTSL 5 BASIC12.55□□□□□ -0.4
Ccdc28bQ8CEG5 Gm5089-201ENSMUST00000081580 2008 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ccdc28bQ8CEG5 E130308A19Rik-201ENSMUST00000052420 3205 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Ccdc28bQ8CEG5 Gstt2-208ENSMUST00000220440 2254 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Ccdc28bQ8CEG5 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ccdc28bQ8CEG5 Maats1-201ENSMUST00000023501 2750 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ccdc28bQ8CEG5 Tspan2-201ENSMUST00000029451 4484 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ccdc28bQ8CEG5 2810429I04Rik-203ENSMUST00000181708 4769 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Ccdc28bQ8CEG5 Faah-201ENSMUST00000049095 3827 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ccdc28bQ8CEG5 Ppp3r1-201ENSMUST00000102880 2859 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ccdc28bQ8CEG5 E230020A03Rik-201ENSMUST00000194646 2386 ntBASIC12.55□□□□□ -0.4
Ccdc28bQ8CEG5 Cnbp-209ENSMUST00000204890 1614 ntAPPRIS ALT1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ccdc28bQ8CEG5 Leprot-201ENSMUST00000030254 1898 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ccdc28bQ8CEG5 Ccdc85a-202ENSMUST00000093253 5431 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Ccdc28bQ8CEG5 Gjb2-201ENSMUST00000055698 2406 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Ccdc28bQ8CEG5 Gm10040-201ENSMUST00000080726 1662 ntBASIC12.54□□□□□ -0.4
Ccdc28bQ8CEG5 Gm9544-201ENSMUST00000223349 2482 ntBASIC12.54□□□□□ -0.4
Ccdc28bQ8CEG5 Gipc3-201ENSMUST00000045102 3521 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Ccdc28bQ8CEG5 Cyb561d1-201ENSMUST00000065664 4058 ntAPPRIS ALT1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Ccdc28bQ8CEG5 Neat1-202ENSMUST00000174287 3004 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Ccdc28bQ8CEG5 Gm16853-201ENSMUST00000181812 1986 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Ccdc28bQ8CEG5 Ak4-202ENSMUST00000106945 4175 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Ccdc28bQ8CEG5 Zfp526-201ENSMUST00000055604 3380 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Ccdc28bQ8CEG5 Sgce-207ENSMUST00000126151 1522 ntTSL 5 BASIC12.54□□□□□ -0.4
Ccdc28bQ8CEG5 Syvn1-204ENSMUST00000138532 3464 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Ccdc28bQ8CEG5 Pla2g2e-202ENSMUST00000105803 381 ntTSL 5 BASIC12.54□□□□□ -0.4
Ccdc28bQ8CEG5 Gm45799-201ENSMUST00000106785 367 ntAPPRIS ALT2 TSL 3 BASIC12.54□□□□□ -0.4
Ccdc28bQ8CEG5 Fgf18-202ENSMUST00000109363 991 ntTSL 3 BASIC12.54□□□□□ -0.4
Ccdc28bQ8CEG5 Gm13223-201ENSMUST00000118609 747 ntBASIC12.54□□□□□ -0.4
Ccdc28bQ8CEG5 Prss47-201ENSMUST00000182457 828 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Ccdc28bQ8CEG5 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Ccdc28bQ8CEG5 Gm43514-201ENSMUST00000198852 424 ntBASIC12.54□□□□□ -0.4
Ccdc28bQ8CEG5 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Ccdc28bQ8CEG5 Jakmip1-215ENSMUST00000212047 1191 ntTSL 5 BASIC12.54□□□□□ -0.4
Ccdc28bQ8CEG5 AC173210.1-201ENSMUST00000222341 1131 ntBASIC12.54□□□□□ -0.4
Ccdc28bQ8CEG5 Nsmce1-201ENSMUST00000033006 1120 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Ccdc28bQ8CEG5 Gtf2h4-207ENSMUST00000160734 1569 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Ccdc28bQ8CEG5 Rita1-201ENSMUST00000031599 1573 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Ccdc28bQ8CEG5 Pfn4-204ENSMUST00000219503 4775 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Ccdc28bQ8CEG5 Kdm4a-202ENSMUST00000097911 4550 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Ccdc28bQ8CEG5 Rnps1-202ENSMUST00000115371 1617 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Ccdc28bQ8CEG5 Zfp41-201ENSMUST00000054555 3736 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Ccdc28bQ8CEG5 Phyhipl-201ENSMUST00000046513 2877 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Ccdc28bQ8CEG5 Rnf220-202ENSMUST00000094853 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Ccdc28bQ8CEG5 Gm37885-201ENSMUST00000192568 1391 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Ccdc28bQ8CEG5 Xpot-203ENSMUST00000218004 6005 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Ccdc28bQ8CEG5 Lrmp-201ENSMUST00000032396 2319 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Ccdc28bQ8CEG5 Ces5a-203ENSMUST00000212009 2042 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Ccdc28bQ8CEG5 Vmn1r45-206ENSMUST00000227977 3297 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Ccdc28bQ8CEG5 Tada3-202ENSMUST00000043333 1708 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Ccdc28bQ8CEG5 Cbln3-201ENSMUST00000063871 4866 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Ccdc28bQ8CEG5 Gm28036-202ENSMUST00000132494 5505 ntAPPRIS P5 TSL 2 BASIC12.54□□□□□ -0.4
Ccdc28bQ8CEG5 Gse1-201ENSMUST00000034279 7127 ntAPPRIS P4 TSL 1 (best) BASIC12.54□□□□□ -0.4
Ccdc28bQ8CEG5 Mageh1-201ENSMUST00000051484 1410 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Ccdc28bQ8CEG5 Slc29a1-213ENSMUST00000167692 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ccdc28bQ8CEG5 Pcdhgb2-202ENSMUST00000195112 4661 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ccdc28bQ8CEG5 Man1a2-201ENSMUST00000008907 7969 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ccdc28bQ8CEG5 Rlbp1-202ENSMUST00000179243 2142 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ccdc28bQ8CEG5 Spcs3-201ENSMUST00000067476 3466 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ccdc28bQ8CEG5 Vwf-201ENSMUST00000100941 1807 ntTSL 5 BASIC12.53□□□□□ -0.4
Ccdc28bQ8CEG5 Tenm3-201ENSMUST00000033965 8961 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ccdc28bQ8CEG5 Cacnb2-203ENSMUST00000114723 3945 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Ccdc28bQ8CEG5 Hoxc10-201ENSMUST00000001699 1909 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ccdc28bQ8CEG5 Ldha-202ENSMUST00000048209 1588 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ccdc28bQ8CEG5 Cdc25c-201ENSMUST00000060710 1941 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ccdc28bQ8CEG5 C130026I21Rik-202ENSMUST00000093506 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ccdc28bQ8CEG5 Nin-204ENSMUST00000169074 6636 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ccdc28bQ8CEG5 H3f3b-201ENSMUST00000016703 1993 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ccdc28bQ8CEG5 Gm13813-201ENSMUST00000120998 787 ntBASIC12.53□□□□□ -0.4
Ccdc28bQ8CEG5 Gm38297-201ENSMUST00000195122 1057 ntBASIC12.53□□□□□ -0.4
Ccdc28bQ8CEG5 Cyb561d2-205ENSMUST00000195235 1162 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ccdc28bQ8CEG5 Gm42599-201ENSMUST00000201308 469 ntBASIC12.53□□□□□ -0.4
Ccdc28bQ8CEG5 1700019N19Rik-201ENSMUST00000028299 970 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ccdc28bQ8CEG5 Orc6-201ENSMUST00000034132 1287 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ccdc28bQ8CEG5 Eif5a-203ENSMUST00000071026 1286 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ccdc28bQ8CEG5 Htr2c-207ENSMUST00000156697 4654 ntTSL 5 BASIC12.53□□□□□ -0.4
Ccdc28bQ8CEG5 Vsx2-202ENSMUST00000169934 3249 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Ccdc28bQ8CEG5 P2rx1-201ENSMUST00000021141 2486 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ccdc28bQ8CEG5 Stau1-203ENSMUST00000109236 2860 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Ccdc28bQ8CEG5 4833439L19Rik-208ENSMUST00000153065 2502 ntTSL 5 BASIC12.53□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 46.4 ms