Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Gm37019-201ENSMUST00000192133 2134 ntBASIC12.42□□□□□ -0.42
Chd3B1AR17 Bpi-203ENSMUST00000109500 1911 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Chd3B1AR17 Gm16070-203ENSMUST00000155588 1902 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Chd3B1AR17 Ikzf1-201ENSMUST00000018798 1542 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Chd3B1AR17 Etfrf1-203ENSMUST00000111721 1336 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Chd3B1AR17 Tfap2c-202ENSMUST00000099058 2985 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Chd3B1AR17 Rp2-202ENSMUST00000115387 4498 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Chd3B1AR17 Dhx58os-201ENSMUST00000137154 1594 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Chd3B1AR17 Ska1-202ENSMUST00000177604 2605 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Chd3B1AR17 Kif5c-201ENSMUST00000028102 6856 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Chd3B1AR17 Fam20a-201ENSMUST00000020938 2541 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Chd3B1AR17 Arid4b-201ENSMUST00000039538 5844 ntTSL 5 BASIC12.41□□□□□ -0.42
Chd3B1AR17 Ash2l-204ENSMUST00000110610 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Chd3B1AR17 Ttc33-203ENSMUST00000118193 1671 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Chd3B1AR17 Otx2-209ENSMUST00000226501 2592 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
Chd3B1AR17 Six4-201ENSMUST00000043208 6402 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Chd3B1AR17 AC113441.2-201ENSMUST00000221538 1468 ntBASIC12.41□□□□□ -0.42
Chd3B1AR17 Med8-204ENSMUST00000106384 1743 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Chd3B1AR17 Gm2383-201ENSMUST00000181461 807 ntBASIC12.41□□□□□ -0.42
Chd3B1AR17 Tmem50a-201ENSMUST00000030626 1204 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Chd3B1AR17 Rhox2a-201ENSMUST00000063340 795 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Chd3B1AR17 Tle6-201ENSMUST00000072020 2015 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
Chd3B1AR17 Pcdha5-201ENSMUST00000192168 5206 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Chd3B1AR17 Gprc5a-201ENSMUST00000050104 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Chd3B1AR17 Trpm1-219ENSMUST00000206314 2323 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Chd3B1AR17 Pbrm1-203ENSMUST00000052239 5065 ntAPPRIS ALT1 TSL 5 BASIC12.41□□□□□ -0.42
Chd3B1AR17 Gm45342-201ENSMUST00000210903 1363 ntBASIC12.41□□□□□ -0.42
Chd3B1AR17 Dppa4-201ENSMUST00000050705 1378 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
Chd3B1AR17 Phyhd1-202ENSMUST00000091132 1353 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Chd3B1AR17 Zmym4-201ENSMUST00000106108 7102 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Chd3B1AR17 Fchsd1-201ENSMUST00000043437 4270 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Chd3B1AR17 Mgat1-202ENSMUST00000101293 2729 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Chd3B1AR17 Dpysl4-202ENSMUST00000121184 2727 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Chd3B1AR17 Tcf25-201ENSMUST00000057934 2738 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
Chd3B1AR17 Gm28323-201ENSMUST00000186817 2499 ntBASIC12.41□□□□□ -0.42
Chd3B1AR17 Vps52-201ENSMUST00000025178 3332 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Chd3B1AR17 Mpp3-204ENSMUST00000107168 3094 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
Chd3B1AR17 Tbc1d9b-201ENSMUST00000093138 4407 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
Chd3B1AR17 Ubtf-203ENSMUST00000107115 3199 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
Chd3B1AR17 Sarm1-201ENSMUST00000061174 4083 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Chd3B1AR17 Gucd1-201ENSMUST00000039796 3500 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Chd3B1AR17 Ifna7-201ENSMUST00000105143 573 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
Chd3B1AR17 Pqbp1-203ENSMUST00000115655 1148 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Chd3B1AR17 Itga3-203ENSMUST00000120375 4697 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Chd3B1AR17 G630018N14Rik-201ENSMUST00000135656 1231 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Chd3B1AR17 Crb3-205ENSMUST00000169543 778 ntAPPRIS ALT2 TSL 2 BASIC12.41□□□□□ -0.42
Chd3B1AR17 Dleu2-205ENSMUST00000182325 463 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Chd3B1AR17 Dleu2-212ENSMUST00000183079 535 ntTSL 3 BASIC12.41□□□□□ -0.42
Chd3B1AR17 Gm44967-201ENSMUST00000207047 631 ntBASIC12.41□□□□□ -0.42
Chd3B1AR17 Gm9445-201ENSMUST00000207454 1285 ntBASIC12.41□□□□□ -0.42
Chd3B1AR17 Rhox9-202ENSMUST00000170643 2422 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Chd3B1AR17 Slitrk3-201ENSMUST00000059407 3587 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Chd3B1AR17 Cyp4f39-201ENSMUST00000003413 1599 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
Chd3B1AR17 Cldn15-201ENSMUST00000001790 1850 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Chd3B1AR17 Adck1-202ENSMUST00000166940 2199 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Chd3B1AR17 Nbeal2-211ENSMUST00000196488 8599 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
Chd3B1AR17 Sh2d7-202ENSMUST00000118413 1316 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Chd3B1AR17 D6Ertd527e-203ENSMUST00000203747 2216 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.42
Chd3B1AR17 Oxa1l-201ENSMUST00000000985 2538 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Chd3B1AR17 Gm12132-201ENSMUST00000130945 1391 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Chd3B1AR17 Acp5-203ENSMUST00000165735 1376 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Chd3B1AR17 Foxp2-207ENSMUST00000115477 6760 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
Chd3B1AR17 Rapgef3-217ENSMUST00000177352 3395 ntAPPRIS ALT1 TSL 5 BASIC12.4□□□□□ -0.42
Chd3B1AR17 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Chd3B1AR17 Ptpn9-201ENSMUST00000034832 4101 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Chd3B1AR17 Lctl-201ENSMUST00000034969 2171 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Chd3B1AR17 Gm42416-201ENSMUST00000115661 2856 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
Chd3B1AR17 Cntfr-204ENSMUST00000102962 1926 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Chd3B1AR17 Lingo1-202ENSMUST00000114247 2287 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Chd3B1AR17 Gucy2e-202ENSMUST00000108664 4415 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
Chd3B1AR17 Bud23-203ENSMUST00000111205 1169 ntAPPRIS ALT2 TSL 3 BASIC12.4□□□□□ -0.42
Chd3B1AR17 Nmb-202ENSMUST00000119428 678 ntAPPRIS ALT2 TSL 2 BASIC12.4□□□□□ -0.42
Chd3B1AR17 Gm15547-201ENSMUST00000122152 333 ntBASIC12.4□□□□□ -0.42
Chd3B1AR17 Zfp629-204ENSMUST00000128731 823 ntTSL 3 BASIC12.4□□□□□ -0.42
Chd3B1AR17 Mitd1-205ENSMUST00000139725 1175 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Chd3B1AR17 9430021M05Rik-201ENSMUST00000145985 1201 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Chd3B1AR17 Gm24749-201ENSMUST00000157838 343 ntBASIC12.4□□□□□ -0.42
Chd3B1AR17 Gm37388-201ENSMUST00000193984 429 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
Chd3B1AR17 Gm33104-201ENSMUST00000214178 1010 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Chd3B1AR17 AC131743.2-201ENSMUST00000221031 968 ntTSL 5 BASIC12.4□□□□□ -0.42
Chd3B1AR17 AC161537.1-201ENSMUST00000226199 1015 ntBASIC12.4□□□□□ -0.42
Chd3B1AR17 3300002I08Rik-201ENSMUST00000051153 650 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Chd3B1AR17 Rhobtb1-205ENSMUST00000164034 2421 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Chd3B1AR17 Eloa-201ENSMUST00000030427 4708 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Chd3B1AR17 Plekhg6-201ENSMUST00000042647 3299 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Chd3B1AR17 C530008M17Rik-203ENSMUST00000120818 1378 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Chd3B1AR17 Gm5580-201ENSMUST00000122096 1362 ntAPPRIS P1 BASIC12.4□□□□□ -0.42
Chd3B1AR17 Rnls-202ENSMUST00000163093 1378 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Chd3B1AR17 4933406P04Rik-201ENSMUST00000092680 1789 ntBASIC12.4□□□□□ -0.42
Chd3B1AR17 Atp6ap1-202ENSMUST00000114171 2157 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Chd3B1AR17 Itga6-202ENSMUST00000112101 4156 ntAPPRIS ALT1 TSL 5 BASIC12.4□□□□□ -0.42
Chd3B1AR17 Zbtb46-201ENSMUST00000029106 5309 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
Chd3B1AR17 Tnxb-201ENSMUST00000087399 12209 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
Chd3B1AR17 Abcg5-201ENSMUST00000066175 2351 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Chd3B1AR17 Nsd3-203ENSMUST00000136107 3818 ntTSL 1 (best) BASIC12.4□□□□□ -0.43
Chd3B1AR17 Ehd1-201ENSMUST00000025684 3353 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
Chd3B1AR17 Lmx1b-201ENSMUST00000041730 4790 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
Chd3B1AR17 Cwc27-201ENSMUST00000022228 2071 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
Chd3B1AR17 Edem3-201ENSMUST00000059498 6327 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
Chd3B1AR17 Wdr90-201ENSMUST00000079461 5991 ntAPPRIS P2 TSL 5 BASIC12.39□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 87.2 ms