Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm16464-201ENSMUST00000117815 1095 ntBASIC19.5■□□□□ 0.71
ShhQ62226 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
ShhQ62226 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
ShhQ62226 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
ShhQ62226 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
ShhQ62226 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC19.49■□□□□ 0.71
ShhQ62226 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC19.49■□□□□ 0.71
ShhQ62226 Slc35b2-207ENSMUST00000226086 850 ntBASIC19.49■□□□□ 0.71
ShhQ62226 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
ShhQ62226 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
ShhQ62226 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC19.48■□□□□ 0.71
ShhQ62226 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC19.48■□□□□ 0.71
ShhQ62226 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
ShhQ62226 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
ShhQ62226 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
ShhQ62226 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
ShhQ62226 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
ShhQ62226 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC19.47■□□□□ 0.71
ShhQ62226 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
ShhQ62226 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
ShhQ62226 Gm22238-201ENSMUST00000175222 88 ntBASIC19.47■□□□□ 0.71
ShhQ62226 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
ShhQ62226 P2rx2-202ENSMUST00000112478 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
ShhQ62226 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
ShhQ62226 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
ShhQ62226 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
ShhQ62226 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
ShhQ62226 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
ShhQ62226 Gm12821-201ENSMUST00000120022 600 ntBASIC19.46■□□□□ 0.71
ShhQ62226 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
ShhQ62226 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC19.46■□□□□ 0.71
ShhQ62226 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
ShhQ62226 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
ShhQ62226 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
ShhQ62226 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
ShhQ62226 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
ShhQ62226 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
ShhQ62226 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC19.46■□□□□ 0.71
ShhQ62226 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC19.45■□□□□ 0.7
ShhQ62226 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
ShhQ62226 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
ShhQ62226 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ShhQ62226 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ShhQ62226 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
ShhQ62226 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ShhQ62226 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ShhQ62226 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
ShhQ62226 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
ShhQ62226 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
ShhQ62226 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
ShhQ62226 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC19.44■□□□□ 0.7
ShhQ62226 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
ShhQ62226 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
ShhQ62226 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
ShhQ62226 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
ShhQ62226 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
ShhQ62226 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
ShhQ62226 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC19.43■□□□□ 0.7
ShhQ62226 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC19.43■□□□□ 0.7
ShhQ62226 AC153962.1-201ENSMUST00000218530 1948 ntBASIC19.43■□□□□ 0.7
ShhQ62226 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
ShhQ62226 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
ShhQ62226 Flvcr1-202ENSMUST00000191946 1216 ntBASIC19.43■□□□□ 0.7
ShhQ62226 AC140930.3-201ENSMUST00000222935 274 ntBASIC19.43■□□□□ 0.7
ShhQ62226 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
ShhQ62226 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
ShhQ62226 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
ShhQ62226 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
ShhQ62226 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC19.42■□□□□ 0.7
ShhQ62226 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
ShhQ62226 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC19.42■□□□□ 0.7
ShhQ62226 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
ShhQ62226 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
ShhQ62226 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC19.42■□□□□ 0.7
ShhQ62226 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
ShhQ62226 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC19.42■□□□□ 0.7
ShhQ62226 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
ShhQ62226 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ShhQ62226 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
ShhQ62226 Gm26766-202ENSMUST00000227544 2347 ntBASIC19.41■□□□□ 0.7
ShhQ62226 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
ShhQ62226 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ShhQ62226 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ShhQ62226 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
ShhQ62226 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ShhQ62226 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ShhQ62226 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
ShhQ62226 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC19.41■□□□□ 0.7
ShhQ62226 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
ShhQ62226 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ShhQ62226 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
ShhQ62226 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC19.41■□□□□ 0.7
ShhQ62226 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ShhQ62226 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ShhQ62226 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC19.4■□□□□ 0.7
ShhQ62226 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ShhQ62226 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
ShhQ62226 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ShhQ62226 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
ShhQ62226 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC19.4■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 58.1 ms