Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC21.05■□□□□ 0.96
Col27a1Q5QNQ9 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Col27a1Q5QNQ9 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC21.04■□□□□ 0.96
Col27a1Q5QNQ9 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC21.04■□□□□ 0.96
Col27a1Q5QNQ9 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Col27a1Q5QNQ9 Gm5576-201ENSMUST00000075809 1236 ntBASIC21.04■□□□□ 0.96
Col27a1Q5QNQ9 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Col27a1Q5QNQ9 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Col27a1Q5QNQ9 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Col27a1Q5QNQ9 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC21.04■□□□□ 0.96
Col27a1Q5QNQ9 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Col27a1Q5QNQ9 Gm10657-201ENSMUST00000193528 1031 ntBASIC21.04■□□□□ 0.96
Col27a1Q5QNQ9 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Col27a1Q5QNQ9 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Col27a1Q5QNQ9 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Col27a1Q5QNQ9 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC21.03■□□□□ 0.96
Col27a1Q5QNQ9 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC21.03■□□□□ 0.96
Col27a1Q5QNQ9 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC21.03■□□□□ 0.96
Col27a1Q5QNQ9 Gm42569-201ENSMUST00000200539 472 ntBASIC21.03■□□□□ 0.96
Col27a1Q5QNQ9 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Col27a1Q5QNQ9 Gm9870-201ENSMUST00000063874 645 ntBASIC21.03■□□□□ 0.96
Col27a1Q5QNQ9 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Col27a1Q5QNQ9 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
Col27a1Q5QNQ9 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Col27a1Q5QNQ9 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Col27a1Q5QNQ9 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Col27a1Q5QNQ9 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Col27a1Q5QNQ9 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Col27a1Q5QNQ9 AC099934.2-201ENSMUST00000196389 70 ntBASIC21.01■□□□□ 0.95
Col27a1Q5QNQ9 AC156953.1-201ENSMUST00000196953 70 ntBASIC21.01■□□□□ 0.95
Col27a1Q5QNQ9 AC157822.2-201ENSMUST00000200291 70 ntBASIC21.01■□□□□ 0.95
Col27a1Q5QNQ9 Hsd11b2-201ENSMUST00000034363 1840 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Col27a1Q5QNQ9 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Col27a1Q5QNQ9 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Col27a1Q5QNQ9 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
Col27a1Q5QNQ9 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Col27a1Q5QNQ9 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Col27a1Q5QNQ9 Krtap5-4-201ENSMUST00000061403 1046 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
Col27a1Q5QNQ9 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
Col27a1Q5QNQ9 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Col27a1Q5QNQ9 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC21■□□□□ 0.95
Col27a1Q5QNQ9 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Col27a1Q5QNQ9 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC21■□□□□ 0.95
Col27a1Q5QNQ9 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
Col27a1Q5QNQ9 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC21■□□□□ 0.95
Col27a1Q5QNQ9 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Col27a1Q5QNQ9 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Col27a1Q5QNQ9 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
Col27a1Q5QNQ9 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC20.98■□□□□ 0.95
Col27a1Q5QNQ9 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Col27a1Q5QNQ9 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Col27a1Q5QNQ9 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Col27a1Q5QNQ9 Creb1-204ENSMUST00000185594 1569 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
Col27a1Q5QNQ9 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Col27a1Q5QNQ9 Gm10129-202ENSMUST00000193100 1316 ntBASIC20.97■□□□□ 0.95
Col27a1Q5QNQ9 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
Col27a1Q5QNQ9 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
Col27a1Q5QNQ9 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
Col27a1Q5QNQ9 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC20.97■□□□□ 0.95
Col27a1Q5QNQ9 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
Col27a1Q5QNQ9 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Col27a1Q5QNQ9 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC20.96■□□□□ 0.95
Col27a1Q5QNQ9 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC20.96■□□□□ 0.95
Col27a1Q5QNQ9 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
Col27a1Q5QNQ9 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
Col27a1Q5QNQ9 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Col27a1Q5QNQ9 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Col27a1Q5QNQ9 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC20.95■□□□□ 0.94
Col27a1Q5QNQ9 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC20.95■□□□□ 0.94
Col27a1Q5QNQ9 Gm26833-201ENSMUST00000180899 440 ntBASIC20.95■□□□□ 0.94
Col27a1Q5QNQ9 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC20.95■□□□□ 0.94
Col27a1Q5QNQ9 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Col27a1Q5QNQ9 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
Col27a1Q5QNQ9 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
Col27a1Q5QNQ9 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col27a1Q5QNQ9 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC20.94■□□□□ 0.94
Col27a1Q5QNQ9 Gm43759-201ENSMUST00000196925 1261 ntBASIC20.94■□□□□ 0.94
Col27a1Q5QNQ9 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Col27a1Q5QNQ9 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC20.94■□□□□ 0.94
Col27a1Q5QNQ9 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
Col27a1Q5QNQ9 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col27a1Q5QNQ9 Cdc34b-202ENSMUST00000188741 1252 ntBASIC20.94■□□□□ 0.94
Col27a1Q5QNQ9 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Col27a1Q5QNQ9 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col27a1Q5QNQ9 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
Col27a1Q5QNQ9 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
Col27a1Q5QNQ9 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Col27a1Q5QNQ9 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC20.93■□□□□ 0.94
Col27a1Q5QNQ9 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC20.93■□□□□ 0.94
Col27a1Q5QNQ9 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col27a1Q5QNQ9 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col27a1Q5QNQ9 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Col27a1Q5QNQ9 Spcs1-204ENSMUST00000226782 949 ntBASIC20.92■□□□□ 0.94
Col27a1Q5QNQ9 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Col27a1Q5QNQ9 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
Col27a1Q5QNQ9 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Col27a1Q5QNQ9 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Col27a1Q5QNQ9 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
Col27a1Q5QNQ9 Gm7160-202ENSMUST00000188519 1027 ntBASIC20.9■□□□□ 0.94
Col27a1Q5QNQ9 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 34.9 ms