Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Rfx3P48381 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Rfx3P48381 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Rfx3P48381 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Rfx3P48381 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
Rfx3P48381 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Rfx3P48381 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Rfx3P48381 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Rfx3P48381 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
Rfx3P48381 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC18.91■□□□□ 0.62
Rfx3P48381 Aktip-205ENSMUST00000125257 2079 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Rfx3P48381 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Rfx3P48381 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Rfx3P48381 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Rfx3P48381 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Rfx3P48381 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Rfx3P48381 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Rfx3P48381 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
Rfx3P48381 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Rfx3P48381 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Rfx3P48381 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Rfx3P48381 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Rfx3P48381 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Rfx3P48381 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
Rfx3P48381 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Rfx3P48381 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Rfx3P48381 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Rfx3P48381 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Rfx3P48381 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
Rfx3P48381 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Rfx3P48381 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Rfx3P48381 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
Rfx3P48381 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Rfx3P48381 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC18.89■□□□□ 0.61
Rfx3P48381 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Rfx3P48381 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Rfx3P48381 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC18.89■□□□□ 0.61
Rfx3P48381 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Rfx3P48381 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Rfx3P48381 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC18.88■□□□□ 0.61
Rfx3P48381 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC18.88■□□□□ 0.61
Rfx3P48381 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Rfx3P48381 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Rfx3P48381 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Rfx3P48381 4930526A20Rik-202ENSMUST00000142461 1628 ntBASIC18.88■□□□□ 0.61
Rfx3P48381 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Rfx3P48381 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC18.88■□□□□ 0.61
Rfx3P48381 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Rfx3P48381 Spry1-201ENSMUST00000038569 2481 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Rfx3P48381 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
Rfx3P48381 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Rfx3P48381 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
Rfx3P48381 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC18.87■□□□□ 0.61
Rfx3P48381 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC18.87■□□□□ 0.61
Rfx3P48381 Cap2-205ENSMUST00000225824 1634 ntBASIC18.87■□□□□ 0.61
Rfx3P48381 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Rfx3P48381 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Rfx3P48381 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
Rfx3P48381 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Rfx3P48381 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Rfx3P48381 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC18.86■□□□□ 0.61
Rfx3P48381 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Rfx3P48381 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Rfx3P48381 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Rfx3P48381 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Rfx3P48381 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC18.85■□□□□ 0.61
Rfx3P48381 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Rfx3P48381 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
Rfx3P48381 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC18.85■□□□□ 0.61
Rfx3P48381 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Rfx3P48381 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Rfx3P48381 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Rfx3P48381 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC18.84■□□□□ 0.61
Rfx3P48381 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC18.84■□□□□ 0.61
Rfx3P48381 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Rfx3P48381 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Rfx3P48381 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
Rfx3P48381 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Rfx3P48381 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
Rfx3P48381 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC18.83■□□□□ 0.6
Rfx3P48381 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Rfx3P48381 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Rfx3P48381 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Rfx3P48381 Gm10420-201ENSMUST00000121713 882 ntBASIC18.82■□□□□ 0.6
Rfx3P48381 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC18.82■□□□□ 0.6
Rfx3P48381 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Rfx3P48381 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Rfx3P48381 Gm43592-201ENSMUST00000196922 1165 ntBASIC18.82■□□□□ 0.6
Rfx3P48381 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Rfx3P48381 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Rfx3P48381 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Rfx3P48381 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Rfx3P48381 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Rfx3P48381 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Rfx3P48381 Gm42418-201ENSMUST00000182010 1831 ntBASIC18.81■□□□□ 0.6
Rfx3P48381 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC18.81■□□□□ 0.6
Rfx3P48381 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Rfx3P48381 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Rfx3P48381 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Rfx3P48381 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 25.7 ms