Protein–RNA interactions for Protein: Q9ES34

Ube3b, Ubiquitin-protein ligase E3B, mousemouse

Predictions only

Length 1,070 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube3bQ9ES34 Recql-201ENSMUST00000032370 2112 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ube3bQ9ES34 Lsm7-201ENSMUST00000035775 468 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ube3bQ9ES34 Dpysl4-202ENSMUST00000121184 2727 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Ube3bQ9ES34 Map3k9-202ENSMUST00000222322 3303 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Ube3bQ9ES34 AC241621.2-201ENSMUST00000223991 2151 ntBASIC15.09■□□□□ 0.01
Ube3bQ9ES34 Col26a1-202ENSMUST00000111103 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ube3bQ9ES34 Gm8862-201ENSMUST00000198379 1346 ntBASIC15.09■□□□□ 0.01
Ube3bQ9ES34 Xrra1-202ENSMUST00000207855 1334 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Ube3bQ9ES34 Gtf2ird1-212ENSMUST00000200944 3133 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Ube3bQ9ES34 Brsk1-202ENSMUST00000120836 2867 ntTSL 5 BASIC15.09■□□□□ 0.01
Ube3bQ9ES34 Cdk11b-201ENSMUST00000067081 2595 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ube3bQ9ES34 Tbc1d9b-201ENSMUST00000093138 4407 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ube3bQ9ES34 Mbp-205ENSMUST00000091789 4797 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Ube3bQ9ES34 Ackr4-202ENSMUST00000076147 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ube3bQ9ES34 Nfkb1-206ENSMUST00000164430 3007 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ube3bQ9ES34 Taf2-201ENSMUST00000041733 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Ube3bQ9ES34 Gm4864-201ENSMUST00000219894 1461 ntBASIC15.08■□□□□ 0.01
Ube3bQ9ES34 Rab10os-202ENSMUST00000177896 2872 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Ube3bQ9ES34 Nccrp1-201ENSMUST00000057974 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Ube3bQ9ES34 Mllt10-203ENSMUST00000114671 5063 ntTSL 1 (best) BASIC15.08■□□□□ 0
Ube3bQ9ES34 1810032O08Rik-201ENSMUST00000106378 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Ube3bQ9ES34 Cage1-202ENSMUST00000089840 3449 ntTSL 1 (best) BASIC15.08■□□□□ 0
Ube3bQ9ES34 Gm24845-201ENSMUST00000158034 109 ntBASIC15.08■□□□□ 0
Ube3bQ9ES34 Iqcf6-201ENSMUST00000171091 537 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
Ube3bQ9ES34 Gm8494-201ENSMUST00000178171 1233 ntBASIC15.08■□□□□ 0
Ube3bQ9ES34 D930030I03Rik-201ENSMUST00000180735 920 ntTSL 1 (best) BASIC15.08■□□□□ 0
Ube3bQ9ES34 Gm9022-201ENSMUST00000182482 992 ntBASIC15.08■□□□□ 0
Ube3bQ9ES34 Gm8885-201ENSMUST00000189382 598 ntBASIC15.08■□□□□ 0
Ube3bQ9ES34 Pcbd1-201ENSMUST00000020298 789 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Ube3bQ9ES34 Prr13-201ENSMUST00000023810 1224 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Ube3bQ9ES34 Mlana-201ENSMUST00000025719 623 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Ube3bQ9ES34 Rnf7-201ENSMUST00000057500 1232 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Ube3bQ9ES34 Gm26035-201ENSMUST00000083065 308 ntBASIC15.08■□□□□ 0
Ube3bQ9ES34 Taar7e-201ENSMUST00000092656 1077 ntAPPRIS P1 BASIC15.08■□□□□ 0
Ube3bQ9ES34 Abcg5-201ENSMUST00000066175 2351 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Ube3bQ9ES34 Fancc-218ENSMUST00000220684 2006 ntTSL 5 BASIC15.08■□□□□ 0
Ube3bQ9ES34 Serpinb12-201ENSMUST00000081277 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Ube3bQ9ES34 Rap1gap2-202ENSMUST00000102521 6565 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
Ube3bQ9ES34 Zscan29-205ENSMUST00000163766 3611 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
Ube3bQ9ES34 Med8-204ENSMUST00000106384 1743 ntTSL 1 (best) BASIC15.08■□□□□ 0
Ube3bQ9ES34 Rbbp5-207ENSMUST00000190997 2856 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
Ube3bQ9ES34 Bud13-201ENSMUST00000074957 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Ube3bQ9ES34 C530008M17Rik-203ENSMUST00000120818 1378 ntTSL 1 (best) BASIC15.08■□□□□ 0
Ube3bQ9ES34 Adck1-202ENSMUST00000166940 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Ube3bQ9ES34 Gm7002-201ENSMUST00000221386 2165 ntBASIC15.08■□□□□ 0
Ube3bQ9ES34 Rpe-202ENSMUST00000113995 2713 ntTSL 3 BASIC15.08■□□□□ 0
Ube3bQ9ES34 Thap2-202ENSMUST00000218842 4970 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ube3bQ9ES34 Chmp5-201ENSMUST00000030128 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ube3bQ9ES34 Gm26593-201ENSMUST00000181848 1970 ntTSL 5 BASIC15.07■□□□□ 0
Ube3bQ9ES34 Tor1aip2-207ENSMUST00000128941 2925 ntTSL 1 (best) BASIC15.07■□□□□ 0
Ube3bQ9ES34 Luc7l3-209ENSMUST00000166312 5244 ntTSL 1 (best) BASIC15.07■□□□□ 0
Ube3bQ9ES34 Gm4219-201ENSMUST00000168140 2143 ntTSL 1 (best) BASIC15.07■□□□□ 0
Ube3bQ9ES34 Slc19a2-201ENSMUST00000044021 3571 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ube3bQ9ES34 Ubap2l-202ENSMUST00000064639 4073 ntTSL 1 (best) BASIC15.07■□□□□ 0
Ube3bQ9ES34 Ccdc162-208ENSMUST00000179614 2739 ntTSL 5 BASIC15.07■□□□□ 0
Ube3bQ9ES34 Usp19-201ENSMUST00000006854 4791 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
Ube3bQ9ES34 Hmgcll1-202ENSMUST00000117981 1189 ntTSL 5 BASIC15.07■□□□□ 0
Ube3bQ9ES34 Rpl3-ps1-201ENSMUST00000120557 1210 ntBASIC15.07■□□□□ 0
Ube3bQ9ES34 Oaz2-ps-201ENSMUST00000121735 537 ntBASIC15.07■□□□□ 0
Ube3bQ9ES34 6530401F13Rik-201ENSMUST00000166971 1090 ntTSL 1 (best) BASIC15.07■□□□□ 0
Ube3bQ9ES34 2610016A17Rik-202ENSMUST00000186768 689 ntBASIC15.07■□□□□ 0
Ube3bQ9ES34 Gm29054-201ENSMUST00000187589 1185 ntTSL 1 (best) BASIC15.07■□□□□ 0
Ube3bQ9ES34 H2-M10.2-201ENSMUST00000023845 1113 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ube3bQ9ES34 Gm9843-201ENSMUST00000052867 504 ntAPPRIS P1 BASIC15.07■□□□□ 0
Ube3bQ9ES34 Srebf2-201ENSMUST00000023100 4989 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ube3bQ9ES34 Dzip1-202ENSMUST00000047208 4476 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Ube3bQ9ES34 Slc5a11-201ENSMUST00000033035 2396 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ube3bQ9ES34 Tk1-201ENSMUST00000026661 1440 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ube3bQ9ES34 Rgs6-209ENSMUST00000186848 1472 ntTSL 5 BASIC15.07■□□□□ 0
Ube3bQ9ES34 Gprc5a-201ENSMUST00000050104 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ube3bQ9ES34 Cybrd1-201ENSMUST00000028403 5339 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Ube3bQ9ES34 Gm13003-201ENSMUST00000151040 2904 ntTSL 1 (best) BASIC15.06■□□□□ 0
Ube3bQ9ES34 Pax7-202ENSMUST00000174681 1725 ntAPPRIS ALT1 TSL 5 BASIC15.06■□□□□ 0
Ube3bQ9ES34 Acer1-201ENSMUST00000056113 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ube3bQ9ES34 Fnbp1-202ENSMUST00000075326 1761 ntTSL 5 BASIC15.06■□□□□ 0
Ube3bQ9ES34 Nrf1-207ENSMUST00000115206 1879 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ube3bQ9ES34 Fuca2-201ENSMUST00000060212 2007 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ube3bQ9ES34 Pfkfb3-213ENSMUST00000171188 2058 ntTSL 5 BASIC15.06■□□□□ 0
Ube3bQ9ES34 Skap1-202ENSMUST00000100519 1100 ntTSL 1 (best) BASIC15.06■□□□□ 0
Ube3bQ9ES34 Fthl17d-201ENSMUST00000105004 856 ntAPPRIS P1 BASIC15.06■□□□□ 0
Ube3bQ9ES34 Gm13124-201ENSMUST00000105748 1221 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
Ube3bQ9ES34 Gm14832-201ENSMUST00000121289 322 ntBASIC15.06■□□□□ 0
Ube3bQ9ES34 Gm12749-201ENSMUST00000122138 1159 ntBASIC15.06■□□□□ 0
Ube3bQ9ES34 Gm14597-202ENSMUST00000129769 715 ntAPPRIS P5 TSL 3 BASIC15.06■□□□□ 0
Ube3bQ9ES34 Fez1-208ENSMUST00000163816 1285 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ube3bQ9ES34 1700030M09Rik-202ENSMUST00000181679 964 ntTSL 1 (best) BASIC15.06■□□□□ 0
Ube3bQ9ES34 Gm28882-201ENSMUST00000185504 314 ntBASIC15.06■□□□□ 0
Ube3bQ9ES34 Gm3096-201ENSMUST00000185770 364 ntBASIC15.06■□□□□ 0
Ube3bQ9ES34 Gm40437-201ENSMUST00000222338 767 ntTSL 5 BASIC15.06■□□□□ 0
Ube3bQ9ES34 Gm18615-201ENSMUST00000222919 1031 ntBASIC15.06■□□□□ 0
Ube3bQ9ES34 Isoc2b-201ENSMUST00000064547 1080 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ube3bQ9ES34 Pphln1-202ENSMUST00000068457 3816 ntTSL 1 (best) BASIC15.06■□□□□ 0
Ube3bQ9ES34 Spock3-201ENSMUST00000093480 3024 ntAPPRIS P3 TSL 5 BASIC15.06■□□□□ 0
Ube3bQ9ES34 Gigyf2-201ENSMUST00000027475 5724 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
Ube3bQ9ES34 Akt1-205ENSMUST00000128300 1342 ntTSL 5 BASIC15.06■□□□□ 0
Ube3bQ9ES34 AC154262.2-202ENSMUST00000225158 1331 ntBASIC15.06■□□□□ 0
Ube3bQ9ES34 Plch2-207ENSMUST00000139976 5322 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
Ube3bQ9ES34 Rhobtb1-205ENSMUST00000164034 2421 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ube3bQ9ES34 Parp16-201ENSMUST00000069000 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Ube3bQ9ES34 Cnst-201ENSMUST00000040706 4709 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Retrieved 100 of 76,532 protein–RNA pairs in 57.1 ms