Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Trim80-201ENSMUST00000093914 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Scn4aQ9ER60 Gm37691-201ENSMUST00000192147 2573 ntBASIC16.84■□□□□ 0.29
Scn4aQ9ER60 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Scn4aQ9ER60 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Scn4aQ9ER60 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Scn4aQ9ER60 Btnl4-201ENSMUST00000065841 1761 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
Scn4aQ9ER60 Grk6-203ENSMUST00000224118 1997 ntAPPRIS ALT2 BASIC16.84■□□□□ 0.29
Scn4aQ9ER60 4930555B11Rik-201ENSMUST00000123210 1533 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Scn4aQ9ER60 E2f3-203ENSMUST00000221536 4597 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Scn4aQ9ER60 E2f3-204ENSMUST00000222730 4579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Scn4aQ9ER60 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
Scn4aQ9ER60 Slc39a11-203ENSMUST00000106633 2688 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Scn4aQ9ER60 Gm31138-201ENSMUST00000212296 1705 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Scn4aQ9ER60 Slc26a4-201ENSMUST00000001253 3075 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Scn4aQ9ER60 S100pbp-205ENSMUST00000117350 2241 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Scn4aQ9ER60 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
Scn4aQ9ER60 Ficd-201ENSMUST00000065698 3133 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Scn4aQ9ER60 Plac8-203ENSMUST00000112910 1224 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
Scn4aQ9ER60 Gm7211-201ENSMUST00000172692 1118 ntBASIC16.84■□□□□ 0.29
Scn4aQ9ER60 Scgb2b7-201ENSMUST00000178258 520 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Scn4aQ9ER60 Spdye4c-203ENSMUST00000178601 1020 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Scn4aQ9ER60 4931440J10Rik-201ENSMUST00000181344 891 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Scn4aQ9ER60 Gm43695-201ENSMUST00000196545 196 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Scn4aQ9ER60 Gm43997-201ENSMUST00000203986 1005 ntBASIC16.84■□□□□ 0.29
Scn4aQ9ER60 Proz-203ENSMUST00000211363 984 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Scn4aQ9ER60 Gm45812-201ENSMUST00000212199 192 ntTSL 5 BASIC16.84■□□□□ 0.29
Scn4aQ9ER60 Atp5h-201ENSMUST00000043931 625 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Scn4aQ9ER60 Tex46-201ENSMUST00000046647 683 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Scn4aQ9ER60 Gm10263-201ENSMUST00000085163 300 ntBASIC16.84■□□□□ 0.29
Scn4aQ9ER60 AC159810.1-201ENSMUST00000214838 1480 ntBASIC16.84■□□□□ 0.29
Scn4aQ9ER60 Qrfpr-203ENSMUST00000197447 1690 ntTSL 5 BASIC16.84■□□□□ 0.29
Scn4aQ9ER60 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
Scn4aQ9ER60 Dnm1-217ENSMUST00000202578 2820 ntAPPRIS P2 TSL 5 BASIC16.83■□□□□ 0.29
Scn4aQ9ER60 Dync1li1-201ENSMUST00000047404 2601 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Scn4aQ9ER60 Adam32-202ENSMUST00000121438 2450 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.29
Scn4aQ9ER60 1810041L15Rik-203ENSMUST00000189248 5296 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
Scn4aQ9ER60 Gm15774-201ENSMUST00000141810 2176 ntTSL 5 BASIC16.83■□□□□ 0.29
Scn4aQ9ER60 Slc39a8-201ENSMUST00000029810 3203 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Scn4aQ9ER60 Fbxl12-207ENSMUST00000151861 1668 ntTSL 2 BASIC16.83■□□□□ 0.28
Scn4aQ9ER60 Gm15498-201ENSMUST00000126693 723 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Scn4aQ9ER60 Gm15506-201ENSMUST00000148776 1133 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Scn4aQ9ER60 Gm4775-201ENSMUST00000169588 402 ntBASIC16.83■□□□□ 0.28
Scn4aQ9ER60 Gm27826-201ENSMUST00000175282 255 ntBASIC16.83■□□□□ 0.28
Scn4aQ9ER60 Gm44216-201ENSMUST00000203942 157 ntBASIC16.83■□□□□ 0.28
Scn4aQ9ER60 Zfp583-201ENSMUST00000062765 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Scn4aQ9ER60 Zkscan17-201ENSMUST00000013262 4064 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Scn4aQ9ER60 Map2k7-202ENSMUST00000062686 3525 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Scn4aQ9ER60 Folr1-203ENSMUST00000106983 1307 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
Scn4aQ9ER60 Mrps23-201ENSMUST00000024486 1332 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Scn4aQ9ER60 Klhl12-202ENSMUST00000112232 3220 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Scn4aQ9ER60 Sdha-201ENSMUST00000022062 2900 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Scn4aQ9ER60 Fam71f1-201ENSMUST00000090487 1584 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Scn4aQ9ER60 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Scn4aQ9ER60 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Scn4aQ9ER60 Cbx6-202ENSMUST00000109625 3056 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Scn4aQ9ER60 Git2-204ENSMUST00000112185 5032 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Scn4aQ9ER60 AC158636.1-201ENSMUST00000220118 1393 ntBASIC16.82■□□□□ 0.28
Scn4aQ9ER60 Tprkb-204ENSMUST00000113752 749 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
Scn4aQ9ER60 Gm11587-201ENSMUST00000128274 1120 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Scn4aQ9ER60 Rps19-ps10-201ENSMUST00000159750 435 ntBASIC16.82■□□□□ 0.28
Scn4aQ9ER60 Gm24328-201ENSMUST00000175104 67 ntBASIC16.82■□□□□ 0.28
Scn4aQ9ER60 Rhoc-205ENSMUST00000196817 877 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
Scn4aQ9ER60 Gm45040-201ENSMUST00000207742 578 ntTSL 3 BASIC16.82■□□□□ 0.28
Scn4aQ9ER60 Gm9791-201ENSMUST00000060997 447 ntBASIC16.82■□□□□ 0.28
Scn4aQ9ER60 Gm815-201ENSMUST00000099536 610 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Scn4aQ9ER60 Olfr541-203ENSMUST00000210357 1642 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
Scn4aQ9ER60 Slc1a2-203ENSMUST00000111212 1957 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Scn4aQ9ER60 Mphosph8-201ENSMUST00000116468 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Scn4aQ9ER60 Morf4l2-202ENSMUST00000080411 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Scn4aQ9ER60 Fnbp1-206ENSMUST00000113555 1776 ntTSL 5 BASIC16.82■□□□□ 0.28
Scn4aQ9ER60 Myb-203ENSMUST00000188495 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Scn4aQ9ER60 Tk1-201ENSMUST00000026661 1440 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Scn4aQ9ER60 Cib2-201ENSMUST00000041901 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Scn4aQ9ER60 Rundc1-201ENSMUST00000040561 3223 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Scn4aQ9ER60 Tcf4-230ENSMUST00000201205 2270 ntTSL 5 BASIC16.82■□□□□ 0.28
Scn4aQ9ER60 Cnppd1-201ENSMUST00000041213 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Scn4aQ9ER60 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC16.82■□□□□ 0.28
Scn4aQ9ER60 Rgs20-202ENSMUST00000118000 2125 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
Scn4aQ9ER60 Crk-201ENSMUST00000017920 3642 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Scn4aQ9ER60 Gm43738-201ENSMUST00000200659 2635 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
Scn4aQ9ER60 Prr33-201ENSMUST00000054910 2251 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Scn4aQ9ER60 Hsd3b3-204ENSMUST00000107019 1533 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
Scn4aQ9ER60 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Scn4aQ9ER60 S100a4-201ENSMUST00000001046 498 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Scn4aQ9ER60 Gm12274-201ENSMUST00000120062 385 ntBASIC16.82■□□□□ 0.28
Scn4aQ9ER60 Gzmc-201ENSMUST00000015585 894 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Scn4aQ9ER60 Tro-208ENSMUST00000164071 891 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
Scn4aQ9ER60 Gm8384-201ENSMUST00000190905 704 ntBASIC16.82■□□□□ 0.28
Scn4aQ9ER60 C230062I16Rik-203ENSMUST00000208015 648 ntTSL 3 BASIC16.82■□□□□ 0.28
Scn4aQ9ER60 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
Scn4aQ9ER60 Smyd1-203ENSMUST00000114188 2064 ntTSL 5 BASIC16.81■□□□□ 0.28
Scn4aQ9ER60 Sh3bp5-202ENSMUST00000100730 2633 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Scn4aQ9ER60 Ranbp3-201ENSMUST00000002445 2511 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Scn4aQ9ER60 Cog7-201ENSMUST00000057576 2902 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Scn4aQ9ER60 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Scn4aQ9ER60 Gm36970-201ENSMUST00000193688 1859 ntBASIC16.81■□□□□ 0.28
Scn4aQ9ER60 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Scn4aQ9ER60 Tesk2-203ENSMUST00000106459 2444 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Scn4aQ9ER60 Gm43807-201ENSMUST00000200678 1781 ntBASIC16.81■□□□□ 0.28
Scn4aQ9ER60 Slc7a4-202ENSMUST00000090165 1907 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 50.8 ms