Protein–RNA interactions for Protein: Q8K445

Clrn1, Clarin-1, mousemouse

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn1Q8K445 Smpd3-201ENSMUST00000067512 5148 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Clrn1Q8K445 4933406P04Rik-201ENSMUST00000092680 1789 ntBASIC12□□□□□ -0.49
Clrn1Q8K445 Zfp36l1-201ENSMUST00000021552 2990 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Clrn1Q8K445 Abcb6-201ENSMUST00000027396 2966 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Clrn1Q8K445 Mdm4-201ENSMUST00000067398 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Clrn1Q8K445 Pkm-202ENSMUST00000163694 2041 ntAPPRIS ALT1 TSL 5 BASIC11.99□□□□□ -0.49
Clrn1Q8K445 Pfkfb3-204ENSMUST00000114844 2107 ntTSL 5 BASIC11.99□□□□□ -0.49
Clrn1Q8K445 Zfp819-203ENSMUST00000120935 2156 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Clrn1Q8K445 Sgk3-202ENSMUST00000166384 3706 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Clrn1Q8K445 Ddr1-204ENSMUST00000119825 3769 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
Clrn1Q8K445 Atg7-207ENSMUST00000182428 2264 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
Clrn1Q8K445 Cd34-201ENSMUST00000016638 2454 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Clrn1Q8K445 Map3k2-201ENSMUST00000096575 10791 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Clrn1Q8K445 Gm20687-203ENSMUST00000185121 4242 ntTSL 2 BASIC11.99□□□□□ -0.49
Clrn1Q8K445 Rapgef2-202ENSMUST00000118340 6544 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Clrn1Q8K445 Pdxdc1-204ENSMUST00000115804 2880 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
Clrn1Q8K445 B4galnt3-203ENSMUST00000212457 2958 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
Clrn1Q8K445 Stx18-203ENSMUST00000114126 3002 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Clrn1Q8K445 Sh3pxd2a-202ENSMUST00000111800 10380 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Clrn1Q8K445 Fgf8-203ENSMUST00000111924 630 ntTSL 5 BASIC11.99□□□□□ -0.49
Clrn1Q8K445 Gm14921-201ENSMUST00000118643 908 ntBASIC11.99□□□□□ -0.49
Clrn1Q8K445 Mrps17-205ENSMUST00000119985 859 ntAPPRIS P1 TSL 2 BASIC11.99□□□□□ -0.49
Clrn1Q8K445 4930579D09Rik-201ENSMUST00000132321 469 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Clrn1Q8K445 Ndufa2-201ENSMUST00000014438 572 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Clrn1Q8K445 Gm15444-201ENSMUST00000148335 388 ntTSL 5 BASIC11.99□□□□□ -0.49
Clrn1Q8K445 Gm16315-201ENSMUST00000163009 783 ntTSL 3 BASIC11.99□□□□□ -0.49
Clrn1Q8K445 Psme1-202ENSMUST00000172738 681 ntTSL 5 BASIC11.99□□□□□ -0.49
Clrn1Q8K445 Gm45784-201ENSMUST00000188360 142 ntBASIC11.99□□□□□ -0.49
Clrn1Q8K445 Tm2d3-207ENSMUST00000206517 905 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
Clrn1Q8K445 AC158516.1-201ENSMUST00000213921 205 ntTSL 5 BASIC11.99□□□□□ -0.49
Clrn1Q8K445 Tyms-ps-201ENSMUST00000219550 915 ntBASIC11.99□□□□□ -0.49
Clrn1Q8K445 Med27-201ENSMUST00000028139 1254 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Clrn1Q8K445 Chchd1-201ENSMUST00000071215 616 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Clrn1Q8K445 Asph-212ENSMUST00000108340 6646 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Clrn1Q8K445 Gm5620-201ENSMUST00000077991 1348 ntBASIC11.99□□□□□ -0.49
Clrn1Q8K445 Dnd1-201ENSMUST00000061522 1451 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Clrn1Q8K445 Adtrp-202ENSMUST00000121404 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Clrn1Q8K445 Gm6992-201ENSMUST00000217973 1607 ntBASIC11.99□□□□□ -0.49
Clrn1Q8K445 Slc31a2-201ENSMUST00000084530 1820 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
Clrn1Q8K445 Rph3al-204ENSMUST00000121287 2199 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
Clrn1Q8K445 Gpatch4-203ENSMUST00000193398 2210 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Clrn1Q8K445 Gm42840-201ENSMUST00000200303 2251 ntBASIC11.99□□□□□ -0.49
Clrn1Q8K445 M6pr-202ENSMUST00000112610 2539 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
Clrn1Q8K445 M6pr-201ENSMUST00000007602 2515 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Clrn1Q8K445 Slc25a22-223ENSMUST00000201710 2565 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
Clrn1Q8K445 Otx1-201ENSMUST00000006071 2789 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Clrn1Q8K445 Dnaaf1-201ENSMUST00000093100 2821 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Clrn1Q8K445 Npepps-219ENSMUST00000172108 2924 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
Clrn1Q8K445 Spock3-201ENSMUST00000093480 3024 ntAPPRIS P3 TSL 5 BASIC11.99□□□□□ -0.49
Clrn1Q8K445 Zbtb42-203ENSMUST00000174780 3160 ntTSL 2 BASIC11.99□□□□□ -0.49
Clrn1Q8K445 Zbtb2-202ENSMUST00000100078 3226 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Clrn1Q8K445 AI597479-201ENSMUST00000010434 3458 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Clrn1Q8K445 Gabpb1-206ENSMUST00000110425 4153 ntAPPRIS ALT1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Clrn1Q8K445 Shisa9-201ENSMUST00000023138 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Clrn1Q8K445 Ttbk2-203ENSMUST00000085840 11152 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
Clrn1Q8K445 Bmp3-201ENSMUST00000031278 6548 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Clrn1Q8K445 Calm1-202ENSMUST00000110082 4115 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Clrn1Q8K445 Gdf6-201ENSMUST00000057613 3532 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Clrn1Q8K445 Hspa4l-208ENSMUST00000204702 9479 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Clrn1Q8K445 Kcnc2-204ENSMUST00000219301 2944 ntAPPRIS P2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Clrn1Q8K445 Islr-202ENSMUST00000168864 2076 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Clrn1Q8K445 Nox3-201ENSMUST00000115800 1792 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Clrn1Q8K445 Aamp-202ENSMUST00000178235 1756 ntAPPRIS ALT1 TSL 5 BASIC11.98□□□□□ -0.49
Clrn1Q8K445 Wsb2-202ENSMUST00000111959 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Clrn1Q8K445 Gm12846-201ENSMUST00000120431 1373 ntBASIC11.98□□□□□ -0.49
Clrn1Q8K445 Sh2d7-202ENSMUST00000118413 1316 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Clrn1Q8K445 Nxf1-202ENSMUST00000010248 748 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Clrn1Q8K445 Snord83b-201ENSMUST00000104546 94 ntBASIC11.98□□□□□ -0.49
Clrn1Q8K445 Gm13226-201ENSMUST00000117838 404 ntBASIC11.98□□□□□ -0.49
Clrn1Q8K445 Cdkn1a-202ENSMUST00000119901 748 ntAPPRIS P1 TSL 2 BASIC11.98□□□□□ -0.49
Clrn1Q8K445 Gm16046-203ENSMUST00000150889 1001 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Clrn1Q8K445 Shisa5-203ENSMUST00000154184 1038 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Clrn1Q8K445 Gm3764-203ENSMUST00000180635 1191 ntTSL 5 BASIC11.98□□□□□ -0.49
Clrn1Q8K445 1700120C14Rik-202ENSMUST00000187967 391 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Clrn1Q8K445 Gm28411-201ENSMUST00000189864 341 ntTSL 3 BASIC11.98□□□□□ -0.49
Clrn1Q8K445 1700123K08Rik-201ENSMUST00000031501 1047 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Clrn1Q8K445 Nudt22-201ENSMUST00000041686 1000 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Clrn1Q8K445 Lce3a-201ENSMUST00000067318 549 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Clrn1Q8K445 Olfr91-201ENSMUST00000087144 939 ntAPPRIS P1 BASIC11.98□□□□□ -0.49
Clrn1Q8K445 B230118H07Rik-202ENSMUST00000099682 895 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
Clrn1Q8K445 Ap3m2-201ENSMUST00000163739 3417 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Clrn1Q8K445 Tbkbp1-204ENSMUST00000107615 3333 ntAPPRIS P2 TSL 5 BASIC11.98□□□□□ -0.49
Clrn1Q8K445 AC121805.2-201ENSMUST00000218808 2538 ntBASIC11.98□□□□□ -0.49
Clrn1Q8K445 Slx4-201ENSMUST00000040790 5706 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Clrn1Q8K445 Rhobtb1-205ENSMUST00000164034 2421 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Clrn1Q8K445 Ncapd3-201ENSMUST00000073127 5499 ntAPPRIS P2 TSL 5 BASIC11.98□□□□□ -0.49
Clrn1Q8K445 Esrp1-203ENSMUST00000108311 3864 ntTSL 5 BASIC11.98□□□□□ -0.49
Clrn1Q8K445 A430093F15Rik-204ENSMUST00000186596 2115 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Clrn1Q8K445 Myo9b-202ENSMUST00000168839 7102 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
Clrn1Q8K445 Gm16070-203ENSMUST00000155588 1902 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Clrn1Q8K445 F7-201ENSMUST00000033820 1859 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Clrn1Q8K445 Acvr1c-201ENSMUST00000028178 9162 ntAPPRIS P2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Clrn1Q8K445 Mast3-203ENSMUST00000211948 4251 ntAPPRIS P2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Clrn1Q8K445 Spop-202ENSMUST00000107724 2881 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Clrn1Q8K445 Gm16090-201ENSMUST00000130296 1704 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Clrn1Q8K445 Rsph3b-201ENSMUST00000024572 1614 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Clrn1Q8K445 Cdv3-203ENSMUST00000116517 3741 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Clrn1Q8K445 Fcgr1-201ENSMUST00000029748 2589 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Clrn1Q8K445 H2-T22-201ENSMUST00000058801 1534 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Clrn1Q8K445 Gm8706-201ENSMUST00000197372 1491 ntBASIC11.97□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 67.5 ms