Protein–RNA interactions for Protein: Q8K2Z2

Prpf39, Pre-mRNA-processing factor 39, mousemouse

Predictions only

Length 665 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf39Q8K2Z2 Tuba1a-201ENSMUST00000097014 1647 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Prpf39Q8K2Z2 Smarcd2-203ENSMUST00000106843 2548 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Prpf39Q8K2Z2 Scube1-203ENSMUST00000076060 3913 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Prpf39Q8K2Z2 Ankfn1-201ENSMUST00000050983 2665 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Prpf39Q8K2Z2 2410131K14Rik-201ENSMUST00000049138 5649 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Prpf39Q8K2Z2 Muc6-202ENSMUST00000189314 5087 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Prpf39Q8K2Z2 Mast1-202ENSMUST00000119820 2078 ntTSL 5 BASIC13.19□□□□□ -0.3
Prpf39Q8K2Z2 Ubqln1-202ENSMUST00000076454 3561 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
Prpf39Q8K2Z2 Gm39377-201ENSMUST00000214587 2533 ntTSL 5 BASIC13.18□□□□□ -0.3
Prpf39Q8K2Z2 Plekhb1-203ENSMUST00000107044 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Prpf39Q8K2Z2 Nmral1-203ENSMUST00000115851 1306 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Prpf39Q8K2Z2 Tmem56-204ENSMUST00000135818 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Prpf39Q8K2Z2 Tspan1-201ENSMUST00000030465 1985 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Prpf39Q8K2Z2 Kctd11-201ENSMUST00000050555 3146 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
Prpf39Q8K2Z2 Pdss2-202ENSMUST00000159139 1467 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Prpf39Q8K2Z2 Sv2b-202ENSMUST00000165175 5524 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Prpf39Q8K2Z2 Srl-201ENSMUST00000023161 5000 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Prpf39Q8K2Z2 Dbn1-201ENSMUST00000021950 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Prpf39Q8K2Z2 4930581F22Rik-201ENSMUST00000093873 2402 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Prpf39Q8K2Z2 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Prpf39Q8K2Z2 Plekhd1-201ENSMUST00000140770 3535 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Prpf39Q8K2Z2 Pdxdc1-204ENSMUST00000115804 2880 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
Prpf39Q8K2Z2 R3hdml-201ENSMUST00000109416 1094 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Prpf39Q8K2Z2 Fzr1-202ENSMUST00000118812 1215 ntTSL 5 BASIC13.18□□□□□ -0.3
Prpf39Q8K2Z2 Adamtsl1-204ENSMUST00000120678 977 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Prpf39Q8K2Z2 1700012C14Rik-201ENSMUST00000132023 498 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Prpf39Q8K2Z2 Gm12167-201ENSMUST00000148132 578 ntTSL 2 BASIC13.18□□□□□ -0.3
Prpf39Q8K2Z2 Gm7809-201ENSMUST00000153199 742 ntBASIC13.18□□□□□ -0.3
Prpf39Q8K2Z2 Gm6222-202ENSMUST00000182143 629 ntBASIC13.18□□□□□ -0.3
Prpf39Q8K2Z2 Gm27514-201ENSMUST00000183692 110 ntBASIC13.18□□□□□ -0.3
Prpf39Q8K2Z2 Gm5370-201ENSMUST00000187187 574 ntBASIC13.18□□□□□ -0.3
Prpf39Q8K2Z2 Med10-204ENSMUST00000221893 815 ntTSL 2 BASIC13.18□□□□□ -0.3
Prpf39Q8K2Z2 Treml1-201ENSMUST00000024792 1235 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Prpf39Q8K2Z2 Gm25857-201ENSMUST00000082788 129 ntBASIC13.18□□□□□ -0.3
Prpf39Q8K2Z2 Vax2os-201ENSMUST00000123402 1435 ntTSL 5 BASIC13.18□□□□□ -0.3
Prpf39Q8K2Z2 Tk1-201ENSMUST00000026661 1440 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Prpf39Q8K2Z2 Kdm4a-202ENSMUST00000097911 4550 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Prpf39Q8K2Z2 Sh3glb2-202ENSMUST00000100215 1749 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Prpf39Q8K2Z2 Dgcr8-202ENSMUST00000115633 4522 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Prpf39Q8K2Z2 Prkag3-202ENSMUST00000113672 2003 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Prpf39Q8K2Z2 Cdk5rap1-203ENSMUST00000109731 2160 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Prpf39Q8K2Z2 Nxf1-211ENSMUST00000184970 5591 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Prpf39Q8K2Z2 Usp16-201ENSMUST00000026710 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Prpf39Q8K2Z2 Zbtb7b-203ENSMUST00000107433 3650 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Prpf39Q8K2Z2 Nup205-204ENSMUST00000201374 6411 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Prpf39Q8K2Z2 Gm12132-201ENSMUST00000130945 1391 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Prpf39Q8K2Z2 Fam118b-203ENSMUST00000121564 1962 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Prpf39Q8K2Z2 Cacnb2-202ENSMUST00000114719 2117 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Prpf39Q8K2Z2 Larp4-202ENSMUST00000100206 6523 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
Prpf39Q8K2Z2 Dcaf10-204ENSMUST00000155551 7250 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Prpf39Q8K2Z2 Rnf4-201ENSMUST00000030992 2895 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Prpf39Q8K2Z2 Klc2-204ENSMUST00000116563 3169 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Prpf39Q8K2Z2 Usp20-211ENSMUST00000170476 4970 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Prpf39Q8K2Z2 Slc16a2-201ENSMUST00000042664 4152 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Prpf39Q8K2Z2 Bak1-202ENSMUST00000078691 2387 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Prpf39Q8K2Z2 Eif1ax-201ENSMUST00000087143 5172 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Prpf39Q8K2Z2 Plekhg2-202ENSMUST00000119990 4880 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Prpf39Q8K2Z2 Osbpl1a-201ENSMUST00000074352 3956 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Prpf39Q8K2Z2 Lrrc29-203ENSMUST00000210412 2304 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Prpf39Q8K2Z2 Alpk3-201ENSMUST00000107348 6369 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Prpf39Q8K2Z2 Gm26635-201ENSMUST00000181077 3199 ntTSL 5 BASIC13.17□□□□□ -0.3
Prpf39Q8K2Z2 Pepd-201ENSMUST00000075068 1881 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Prpf39Q8K2Z2 Sh3bp5l-202ENSMUST00000116376 3016 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Prpf39Q8K2Z2 Rbl1-201ENSMUST00000029170 4862 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Prpf39Q8K2Z2 4930550L24Rik-201ENSMUST00000062542 1572 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Prpf39Q8K2Z2 Cdkl2-203ENSMUST00000113140 2559 ntAPPRIS P4 TSL 5 BASIC13.17□□□□□ -0.3
Prpf39Q8K2Z2 Rhox9-202ENSMUST00000170643 2422 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Prpf39Q8K2Z2 Sema4a-213ENSMUST00000165898 3125 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Prpf39Q8K2Z2 Rnf10-201ENSMUST00000040555 3106 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Prpf39Q8K2Z2 Urgcp-204ENSMUST00000120306 3972 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Prpf39Q8K2Z2 Elovl1-203ENSMUST00000102673 1248 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Prpf39Q8K2Z2 Glrx2-202ENSMUST00000111957 580 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Prpf39Q8K2Z2 Fam71f2-201ENSMUST00000115286 1180 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Prpf39Q8K2Z2 Gm9431-201ENSMUST00000119765 1051 ntBASIC13.17□□□□□ -0.3
Prpf39Q8K2Z2 Gm13394-201ENSMUST00000121658 1000 ntBASIC13.17□□□□□ -0.3
Prpf39Q8K2Z2 Gm5863-201ENSMUST00000121760 1008 ntBASIC13.17□□□□□ -0.3
Prpf39Q8K2Z2 Gm25261-201ENSMUST00000157416 134 ntBASIC13.17□□□□□ -0.3
Prpf39Q8K2Z2 Gm16282-201ENSMUST00000162641 451 ntTSL 3 BASIC13.17□□□□□ -0.3
Prpf39Q8K2Z2 Nme9-202ENSMUST00000163199 1196 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Prpf39Q8K2Z2 Gm3890-201ENSMUST00000182416 207 ntBASIC13.17□□□□□ -0.3
Prpf39Q8K2Z2 Gm4598-201ENSMUST00000206756 1080 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Prpf39Q8K2Z2 Gm5781-201ENSMUST00000219792 443 ntBASIC13.17□□□□□ -0.3
Prpf39Q8K2Z2 AC132317.1-201ENSMUST00000227227 962 ntBASIC13.17□□□□□ -0.3
Prpf39Q8K2Z2 AC140451.2-201ENSMUST00000228030 664 ntBASIC13.17□□□□□ -0.3
Prpf39Q8K2Z2 4921530L21Rik-201ENSMUST00000045892 1161 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Prpf39Q8K2Z2 Rnase2b-201ENSMUST00000075648 759 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Prpf39Q8K2Z2 Gm10131-201ENSMUST00000080152 736 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Prpf39Q8K2Z2 Myh7-204ENSMUST00000168485 6230 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Prpf39Q8K2Z2 Git1-201ENSMUST00000037285 3512 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Prpf39Q8K2Z2 Gdf6-201ENSMUST00000057613 3532 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Prpf39Q8K2Z2 Sesn3-204ENSMUST00000208222 9125 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Prpf39Q8K2Z2 Qrfp-201ENSMUST00000057407 2927 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Prpf39Q8K2Z2 Reep3-201ENSMUST00000020023 5430 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Prpf39Q8K2Z2 Adam32-201ENSMUST00000119720 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Prpf39Q8K2Z2 AC159195.1-201ENSMUST00000225867 2086 ntBASIC13.17□□□□□ -0.3
Prpf39Q8K2Z2 Nars-201ENSMUST00000025483 2632 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Prpf39Q8K2Z2 Grip1-212ENSMUST00000147356 4145 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Prpf39Q8K2Z2 Psmd13-208ENSMUST00000163610 1382 ntTSL 5 BASIC13.17□□□□□ -0.3
Prpf39Q8K2Z2 Gm37885-201ENSMUST00000192568 1391 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Prpf39Q8K2Z2 Slc7a4-202ENSMUST00000090165 1907 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 74.1 ms