Protein–RNA interactions for Protein: Q8BHH8

Clrn3, Clarin-3, mousemouse

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn3Q8BHH8 Ptbp1-216ENSMUST00000172282 3110 ntAPPRIS P4 TSL 1 (best) BASIC11.98□□□□□ -0.49
Clrn3Q8BHH8 Ccdc81-201ENSMUST00000041195 2439 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Clrn3Q8BHH8 Zmym4-201ENSMUST00000106108 7102 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Clrn3Q8BHH8 Dennd4b-201ENSMUST00000098914 5423 ntAPPRIS P2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Clrn3Q8BHH8 BC051019-201ENSMUST00000033334 1626 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Clrn3Q8BHH8 Wdr45-204ENSMUST00000115689 1568 ntAPPRIS P2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Clrn3Q8BHH8 Sf1-208ENSMUST00000131252 4353 ntAPPRIS P4 TSL 1 (best) BASIC11.98□□□□□ -0.49
Clrn3Q8BHH8 Ube2j2-204ENSMUST00000105582 1394 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Clrn3Q8BHH8 Dnmt3b-208ENSMUST00000109772 4015 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Clrn3Q8BHH8 Mapkapk5-205ENSMUST00000111786 975 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Clrn3Q8BHH8 Mthfsd-206ENSMUST00000133037 1060 ntTSL 5 BASIC11.98□□□□□ -0.49
Clrn3Q8BHH8 Gm24644-201ENSMUST00000157114 139 ntBASIC11.98□□□□□ -0.49
Clrn3Q8BHH8 Crb3-204ENSMUST00000163763 868 ntAPPRIS P3 TSL 2 BASIC11.98□□□□□ -0.49
Clrn3Q8BHH8 Mad2l1bp-201ENSMUST00000171172 1269 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Clrn3Q8BHH8 Gm27839-201ENSMUST00000184242 106 ntBASIC11.98□□□□□ -0.49
Clrn3Q8BHH8 Gm29649-201ENSMUST00000185649 419 ntBASIC11.98□□□□□ -0.49
Clrn3Q8BHH8 Ube2a-205ENSMUST00000201068 1298 ntTSL 5 BASIC11.98□□□□□ -0.49
Clrn3Q8BHH8 AC159263.1-201ENSMUST00000220746 482 ntTSL 5 BASIC11.98□□□□□ -0.49
Clrn3Q8BHH8 Gm36264-202ENSMUST00000221989 1142 ntTSL 5 BASIC11.98□□□□□ -0.49
Clrn3Q8BHH8 Dmac1-201ENSMUST00000030103 741 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Clrn3Q8BHH8 Pin1rt1-201ENSMUST00000099659 1172 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Clrn3Q8BHH8 Nfe2l1-210ENSMUST00000167110 3547 ntAPPRIS ALT2 TSL 2 BASIC11.98□□□□□ -0.49
Clrn3Q8BHH8 BC003331-203ENSMUST00000097546 3174 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
Clrn3Q8BHH8 Pkp1-201ENSMUST00000027667 4669 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Clrn3Q8BHH8 Wdr25-202ENSMUST00000167816 2657 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
Clrn3Q8BHH8 Psap-204ENSMUST00000177779 2657 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
Clrn3Q8BHH8 Psap-205ENSMUST00000179238 2657 ntAPPRIS P3 TSL 5 BASIC11.98□□□□□ -0.49
Clrn3Q8BHH8 Dcaf7-201ENSMUST00000058438 5750 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Clrn3Q8BHH8 1700128E19Rik-201ENSMUST00000134409 2439 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Clrn3Q8BHH8 3830432H09Rik-202ENSMUST00000188909 2414 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Clrn3Q8BHH8 Nwd2-201ENSMUST00000159584 8534 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Clrn3Q8BHH8 Trpv1-201ENSMUST00000006106 2340 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
Clrn3Q8BHH8 Adprhl1-205ENSMUST00000204916 5228 ntTSL 5 BASIC11.98□□□□□ -0.49
Clrn3Q8BHH8 Itgal-201ENSMUST00000106306 5195 ntAPPRIS P4 TSL 1 (best) BASIC11.98□□□□□ -0.49
Clrn3Q8BHH8 Kcnd3-201ENSMUST00000079169 2102 ntAPPRIS P4 TSL 1 (best) BASIC11.98□□□□□ -0.49
Clrn3Q8BHH8 2810429I04Rik-203ENSMUST00000181708 4769 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Clrn3Q8BHH8 Prkcd-202ENSMUST00000112202 2005 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Clrn3Q8BHH8 Oraov1-201ENSMUST00000033388 2015 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
Clrn3Q8BHH8 Apol7c-201ENSMUST00000062562 2044 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Clrn3Q8BHH8 Ints5-201ENSMUST00000096249 3294 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Clrn3Q8BHH8 Tollip-204ENSMUST00000151890 1753 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Clrn3Q8BHH8 Gjb5-201ENSMUST00000046498 1721 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Clrn3Q8BHH8 Ifi47-204ENSMUST00000213728 1678 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
Clrn3Q8BHH8 AC164441.2-201ENSMUST00000220818 2746 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Clrn3Q8BHH8 Kif13a-201ENSMUST00000056978 6866 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Clrn3Q8BHH8 Pex11b-207ENSMUST00000165842 1562 ntTSL 2 BASIC11.97□□□□□ -0.49
Clrn3Q8BHH8 Krt17-201ENSMUST00000080893 1551 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Clrn3Q8BHH8 Cd72-201ENSMUST00000030179 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Clrn3Q8BHH8 Yif1a-201ENSMUST00000025811 1493 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Clrn3Q8BHH8 Afap1l1-201ENSMUST00000120472 3444 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Clrn3Q8BHH8 Trim26-202ENSMUST00000123715 1406 ntTSL 5 BASIC11.97□□□□□ -0.49
Clrn3Q8BHH8 Pif1-202ENSMUST00000131483 3309 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Clrn3Q8BHH8 Asap3-201ENSMUST00000047526 4225 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Clrn3Q8BHH8 Gtf2ird1-207ENSMUST00000111245 3299 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Clrn3Q8BHH8 Bach2-202ENSMUST00000108180 8882 ntAPPRIS P2 TSL 5 BASIC11.97□□□□□ -0.49
Clrn3Q8BHH8 Pbld2-201ENSMUST00000020262 2212 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Clrn3Q8BHH8 Tmem115-201ENSMUST00000010189 2194 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Clrn3Q8BHH8 Rcbtb2-202ENSMUST00000110952 2176 ntAPPRIS P2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Clrn3Q8BHH8 Gm28043-201ENSMUST00000130871 6521 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
Clrn3Q8BHH8 Mir686-201ENSMUST00000102174 109 ntBASIC11.97□□□□□ -0.49
Clrn3Q8BHH8 Defb30-203ENSMUST00000111208 503 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Clrn3Q8BHH8 Defb30-204ENSMUST00000111209 721 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Clrn3Q8BHH8 Gm12203-201ENSMUST00000118235 598 ntBASIC11.97□□□□□ -0.49
Clrn3Q8BHH8 Car15-201ENSMUST00000118960 1283 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Clrn3Q8BHH8 Gm12209-201ENSMUST00000120089 596 ntBASIC11.97□□□□□ -0.49
Clrn3Q8BHH8 Chchd7-207ENSMUST00000121210 548 ntTSL 2 BASIC11.97□□□□□ -0.49
Clrn3Q8BHH8 H2afb1-201ENSMUST00000122446 348 ntAPPRIS P1 BASIC11.97□□□□□ -0.49
Clrn3Q8BHH8 Hypk-204ENSMUST00000126764 961 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Clrn3Q8BHH8 Pax5-206ENSMUST00000134968 969 ntTSL 5 BASIC11.97□□□□□ -0.49
Clrn3Q8BHH8 P2rx4-204ENSMUST00000139631 1030 ntTSL 5 BASIC11.97□□□□□ -0.49
Clrn3Q8BHH8 Pla2g10os-201ENSMUST00000141172 174 ntTSL 5 BASIC11.97□□□□□ -0.49
Clrn3Q8BHH8 P2rx4-206ENSMUST00000142664 1111 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Clrn3Q8BHH8 Gm22331-201ENSMUST00000158066 136 ntBASIC11.97□□□□□ -0.49
Clrn3Q8BHH8 Pde4b-210ENSMUST00000172616 823 ntTSL 5 BASIC11.97□□□□□ -0.49
Clrn3Q8BHH8 Lrcol1-202ENSMUST00000185691 764 ntAPPRIS P2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Clrn3Q8BHH8 Gm42442-201ENSMUST00000197951 1133 ntBASIC11.97□□□□□ -0.49
Clrn3Q8BHH8 Nsmce1-201ENSMUST00000033006 1120 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Clrn3Q8BHH8 Dnaic2-201ENSMUST00000069325 2874 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
Clrn3Q8BHH8 Slc6a18-208ENSMUST00000222029 2005 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
Clrn3Q8BHH8 Gm45532-201ENSMUST00000210342 3620 ntBASIC11.97□□□□□ -0.49
Clrn3Q8BHH8 Slc6a18-210ENSMUST00000223074 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Clrn3Q8BHH8 Zbtb16-201ENSMUST00000093852 5114 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Clrn3Q8BHH8 Srd5a1-202ENSMUST00000091514 2644 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Clrn3Q8BHH8 Lrrc20-201ENSMUST00000049242 3216 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Clrn3Q8BHH8 Zfp536-201ENSMUST00000056338 4621 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Clrn3Q8BHH8 Mlx-203ENSMUST00000107303 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Clrn3Q8BHH8 Bach2os-201ENSMUST00000126225 1661 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Clrn3Q8BHH8 Gm8798-201ENSMUST00000211877 1661 ntBASIC11.97□□□□□ -0.49
Clrn3Q8BHH8 Gm44806-201ENSMUST00000205574 2303 ntBASIC11.97□□□□□ -0.49
Clrn3Q8BHH8 Grsf1-202ENSMUST00000113234 2286 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Clrn3Q8BHH8 Gm37513-201ENSMUST00000194830 2268 ntBASIC11.97□□□□□ -0.49
Clrn3Q8BHH8 Gm38378-201ENSMUST00000195153 2268 ntBASIC11.97□□□□□ -0.49
Clrn3Q8BHH8 Spon1-201ENSMUST00000046687 6161 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Clrn3Q8BHH8 Dnajc13-201ENSMUST00000035170 8012 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
Clrn3Q8BHH8 Myh14-203ENSMUST00000107900 6400 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.49
Clrn3Q8BHH8 Gm21982-201ENSMUST00000146232 3821 ntTSL 2 BASIC11.96□□□□□ -0.49
Clrn3Q8BHH8 Ago1-201ENSMUST00000097888 7227 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Clrn3Q8BHH8 Grin1-201ENSMUST00000028335 4238 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Clrn3Q8BHH8 Kcnj12-203ENSMUST00000108717 2463 ntAPPRIS P3 TSL 1 (best) BASIC11.96□□□□□ -0.49
Clrn3Q8BHH8 Arl13b-201ENSMUST00000089289 3528 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 73.2 ms