Protein–RNA interactions for Protein: Q811S7

Ubp1, Upstream-binding protein 1, mousemouse

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubp1Q811S7 D630023F18Rik-201ENSMUST00000050047 2180 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ubp1Q811S7 1700029I15Rik-201ENSMUST00000054316 364 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ubp1Q811S7 Tmem86b-201ENSMUST00000055085 1222 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ubp1Q811S7 Zfp41-201ENSMUST00000054555 3736 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ubp1Q811S7 Fam222b-201ENSMUST00000073705 3258 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ubp1Q811S7 Gtf2ird1-212ENSMUST00000200944 3133 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Ubp1Q811S7 Ddx19b-202ENSMUST00000065784 3104 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Ubp1Q811S7 Asxl1-205ENSMUST00000227428 6981 ntAPPRIS ALT2 BASIC12.58□□□□□ -0.4
Ubp1Q811S7 Ccdc116-203ENSMUST00000115711 1915 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ubp1Q811S7 Cdc25c-201ENSMUST00000060710 1941 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ubp1Q811S7 Hpcal4-202ENSMUST00000106246 1627 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Ubp1Q811S7 Prkce-201ENSMUST00000097274 3161 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ubp1Q811S7 Ibtk-201ENSMUST00000039213 5650 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ubp1Q811S7 Mirg-202ENSMUST00000181543 1300 ntTSL 5 BASIC12.58□□□□□ -0.4
Ubp1Q811S7 Pbxip1-201ENSMUST00000038942 4479 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ubp1Q811S7 Hsph1-201ENSMUST00000074846 3240 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Ubp1Q811S7 C3-201ENSMUST00000024988 5136 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ubp1Q811S7 Serpinb2-202ENSMUST00000064916 1996 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ubp1Q811S7 Vmp1-201ENSMUST00000018315 2787 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ubp1Q811S7 Msi2-203ENSMUST00000107909 6436 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ubp1Q811S7 Pole3-201ENSMUST00000030091 1805 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ubp1Q811S7 Srr-202ENSMUST00000108447 3138 ntTSL 5 BASIC12.57□□□□□ -0.4
Ubp1Q811S7 Neurod6-201ENSMUST00000044767 2150 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ubp1Q811S7 Efr3a-205ENSMUST00000173858 2848 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Ubp1Q811S7 Tle6-201ENSMUST00000072020 2015 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ubp1Q811S7 Ggn-202ENSMUST00000098609 2653 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ubp1Q811S7 Smarcd2-203ENSMUST00000106843 2548 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Ubp1Q811S7 Nfyc-203ENSMUST00000118902 1887 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ubp1Q811S7 Dus2-201ENSMUST00000034375 1860 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ubp1Q811S7 Wdfy2-201ENSMUST00000014691 6646 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ubp1Q811S7 Gcom1-201ENSMUST00000163998 1726 ntAPPRIS P5 TSL 5 BASIC12.57□□□□□ -0.4
Ubp1Q811S7 Ccdc25-201ENSMUST00000022614 2230 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ubp1Q811S7 Klhl38-201ENSMUST00000022985 2212 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ubp1Q811S7 Bcl2l13-201ENSMUST00000009256 6925 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ubp1Q811S7 Cldn18-204ENSMUST00000136429 1409 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Ubp1Q811S7 Arnt-201ENSMUST00000015666 2603 ntTSL 5 BASIC12.57□□□□□ -0.4
Ubp1Q811S7 Snord83b-201ENSMUST00000104546 94 ntBASIC12.57□□□□□ -0.4
Ubp1Q811S7 Wfdc9-202ENSMUST00000109335 547 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Ubp1Q811S7 Cdk4-202ENSMUST00000120226 714 ntTSL 5 BASIC12.57□□□□□ -0.4
Ubp1Q811S7 C87198-201ENSMUST00000173553 1045 ntTSL 3 BASIC12.57□□□□□ -0.4
Ubp1Q811S7 Gm6222-202ENSMUST00000182143 629 ntBASIC12.57□□□□□ -0.4
Ubp1Q811S7 Gm28722-201ENSMUST00000187630 1036 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Ubp1Q811S7 Lamtor1-202ENSMUST00000193465 661 ntTSL 5 BASIC12.57□□□□□ -0.4
Ubp1Q811S7 CT030161.3-201ENSMUST00000218235 367 ntTSL 3 BASIC12.57□□□□□ -0.4
Ubp1Q811S7 Gm35638-201ENSMUST00000220724 652 ntBASIC12.57□□□□□ -0.4
Ubp1Q811S7 Vmn1r213-201ENSMUST00000076897 1155 ntAPPRIS P2 BASIC12.57□□□□□ -0.4
Ubp1Q811S7 Ces2e-202ENSMUST00000109410 1999 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ubp1Q811S7 Fam118b-203ENSMUST00000121564 1962 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ubp1Q811S7 Pcid2-201ENSMUST00000164416 2860 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ubp1Q811S7 Rab10os-202ENSMUST00000177896 2872 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Ubp1Q811S7 Rps13-203ENSMUST00000205490 1317 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Ubp1Q811S7 Pltp-202ENSMUST00000109316 2226 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ubp1Q811S7 Cbl-206ENSMUST00000206147 3452 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Ubp1Q811S7 Scrn3-202ENSMUST00000112050 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ubp1Q811S7 A530072M11Rik-201ENSMUST00000151122 1852 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Ubp1Q811S7 Cdadc1-201ENSMUST00000022555 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ubp1Q811S7 Syngr2-201ENSMUST00000026649 1520 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ubp1Q811S7 Dppa4-202ENSMUST00000096045 1534 ntAPPRIS P4 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ubp1Q811S7 Chrnb2-201ENSMUST00000029562 6399 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ubp1Q811S7 Gm38355-201ENSMUST00000192514 1570 ntBASIC12.56□□□□□ -0.4
Ubp1Q811S7 B230209E15Rik-201ENSMUST00000209115 1597 ntTSL 5 BASIC12.56□□□□□ -0.4
Ubp1Q811S7 Tspyl3-201ENSMUST00000099194 3072 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
Ubp1Q811S7 Aamp-202ENSMUST00000178235 1756 ntAPPRIS ALT1 TSL 5 BASIC12.56□□□□□ -0.4
Ubp1Q811S7 C030034I22Rik-202ENSMUST00000188481 4231 ntBASIC12.56□□□□□ -0.4
Ubp1Q811S7 Rnf185-201ENSMUST00000064364 2906 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Ubp1Q811S7 Gm7002-201ENSMUST00000221386 2165 ntBASIC12.56□□□□□ -0.4
Ubp1Q811S7 Samd7-201ENSMUST00000108262 3144 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Ubp1Q811S7 Dixdc1-202ENSMUST00000117093 1613 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Ubp1Q811S7 Col26a1-202ENSMUST00000111103 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ubp1Q811S7 Plekhb1-203ENSMUST00000107044 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ubp1Q811S7 Insrr-201ENSMUST00000029711 5102 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ubp1Q811S7 Nfkb1-206ENSMUST00000164430 3007 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ubp1Q811S7 Ssh1-202ENSMUST00000112298 5584 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ubp1Q811S7 Ighv7-3-201ENSMUST00000103461 361 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
Ubp1Q811S7 Gm12742-201ENSMUST00000117326 410 ntBASIC12.56□□□□□ -0.4
Ubp1Q811S7 Gm12291-201ENSMUST00000121627 311 ntBASIC12.56□□□□□ -0.4
Ubp1Q811S7 Gm8062-201ENSMUST00000139696 444 ntBASIC12.56□□□□□ -0.4
Ubp1Q811S7 Gm15853-201ENSMUST00000160268 556 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Ubp1Q811S7 S100a14-201ENSMUST00000164481 915 ntTSL 2 BASIC12.56□□□□□ -0.4
Ubp1Q811S7 Gm28380-201ENSMUST00000188800 385 ntTSL 5 BASIC12.56□□□□□ -0.4
Ubp1Q811S7 Gm32025-201ENSMUST00000217960 307 ntBASIC12.56□□□□□ -0.4
Ubp1Q811S7 Oit1-201ENSMUST00000022269 1253 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ubp1Q811S7 4933434E20Rik-202ENSMUST00000029552 1080 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Ubp1Q811S7 Rpsa-ps10-201ENSMUST00000057740 885 ntBASIC12.56□□□□□ -0.4
Ubp1Q811S7 Gm44775-201ENSMUST00000207266 1456 ntBASIC12.56□□□□□ -0.4
Ubp1Q811S7 Gm45643-201ENSMUST00000211364 1484 ntBASIC12.56□□□□□ -0.4
Ubp1Q811S7 Ptpru-201ENSMUST00000030741 4416 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Ubp1Q811S7 Exosc2-201ENSMUST00000038474 1686 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ubp1Q811S7 Bop1-201ENSMUST00000023217 2476 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ubp1Q811S7 Smg7-203ENSMUST00000111836 3928 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ubp1Q811S7 Oxa1l-201ENSMUST00000000985 2538 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ubp1Q811S7 Dnajc16-201ENSMUST00000038014 5969 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ubp1Q811S7 Ube2a-201ENSMUST00000016452 1732 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ubp1Q811S7 Tekt4-201ENSMUST00000025002 1532 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ubp1Q811S7 Gm43579-201ENSMUST00000202387 1307 ntBASIC12.56□□□□□ -0.4
Ubp1Q811S7 Ppara-202ENSMUST00000109422 3413 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ubp1Q811S7 Slc6a6-201ENSMUST00000032185 6186 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ubp1Q811S7 Ska1-202ENSMUST00000177604 2605 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ubp1Q811S7 Cdk10-212ENSMUST00000213005 1580 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Ubp1Q811S7 Klhl18-201ENSMUST00000068025 4530 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 42.3 ms