Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Trim25-203ENSMUST00000107896 5590 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Rnf220Q6PDX6 Ly75-202ENSMUST00000112533 6901 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
Rnf220Q6PDX6 Oxnad1-201ENSMUST00000022462 2376 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Rnf220Q6PDX6 Med12l-203ENSMUST00000040846 3747 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Rnf220Q6PDX6 Pla2g4b-201ENSMUST00000126150 2790 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
Rnf220Q6PDX6 Fbxl22-201ENSMUST00000056890 3935 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Rnf220Q6PDX6 Nefl-201ENSMUST00000022639 3380 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Rnf220Q6PDX6 Ephx3-201ENSMUST00000087721 2416 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
Rnf220Q6PDX6 Mir874-201ENSMUST00000104769 76 ntBASIC12.05□□□□□ -0.48
Rnf220Q6PDX6 Dhrs3-202ENSMUST00000105744 1226 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Rnf220Q6PDX6 Gdap1l1-203ENSMUST00000109421 1206 ntAPPRIS ALT1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Rnf220Q6PDX6 Rab1a-202ENSMUST00000109601 1200 ntTSL 5 BASIC12.05□□□□□ -0.48
Rnf220Q6PDX6 Apoo-203ENSMUST00000113897 1218 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Rnf220Q6PDX6 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC12.05□□□□□ -0.48
Rnf220Q6PDX6 Gm15384-201ENSMUST00000138832 486 ntTSL 5 BASIC12.05□□□□□ -0.48
Rnf220Q6PDX6 Hpca-207ENSMUST00000139450 812 ntAPPRIS P1 TSL 3 BASIC12.05□□□□□ -0.48
Rnf220Q6PDX6 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC12.05□□□□□ -0.48
Rnf220Q6PDX6 Sirpa-213ENSMUST00000163034 677 ntTSL 3 BASIC12.05□□□□□ -0.48
Rnf220Q6PDX6 A930015D03Rik-201ENSMUST00000173900 1111 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Rnf220Q6PDX6 Gm24420-201ENSMUST00000176676 59 ntBASIC12.05□□□□□ -0.48
Rnf220Q6PDX6 Gm37117-201ENSMUST00000194238 589 ntTSL 5 BASIC12.05□□□□□ -0.48
Rnf220Q6PDX6 Tmem253-203ENSMUST00000227295 704 ntAPPRIS ALT2 BASIC12.05□□□□□ -0.48
Rnf220Q6PDX6 Clps-201ENSMUST00000025062 550 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Rnf220Q6PDX6 Aif1-201ENSMUST00000025257 847 ntAPPRIS P1 TSL 2 BASIC12.05□□□□□ -0.48
Rnf220Q6PDX6 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Rnf220Q6PDX6 Ucn-201ENSMUST00000043475 504 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Rnf220Q6PDX6 Aym1-201ENSMUST00000066573 528 ntAPPRIS P1 BASIC12.05□□□□□ -0.48
Rnf220Q6PDX6 Krtap6-5-201ENSMUST00000074637 600 ntAPPRIS P1 BASIC12.05□□□□□ -0.48
Rnf220Q6PDX6 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Rnf220Q6PDX6 Atp8a1-202ENSMUST00000072971 7154 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Rnf220Q6PDX6 Zfp536-202ENSMUST00000175941 4423 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Rnf220Q6PDX6 Nol4-204ENSMUST00000097651 4549 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Rnf220Q6PDX6 Dcun1d2-201ENSMUST00000045366 2748 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Rnf220Q6PDX6 2810404F17Rik-201ENSMUST00000156615 1704 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Rnf220Q6PDX6 Syt8-204ENSMUST00000118276 1503 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
Rnf220Q6PDX6 Mrm3-201ENSMUST00000040577 1510 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Rnf220Q6PDX6 Catsper3-202ENSMUST00000109898 1311 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
Rnf220Q6PDX6 Mei1-201ENSMUST00000089178 3974 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
Rnf220Q6PDX6 Kcnt1-211ENSMUST00000171268 3771 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Rnf220Q6PDX6 Inpp4a-206ENSMUST00000132615 3038 ntTSL 5 BASIC12.05□□□□□ -0.48
Rnf220Q6PDX6 Rab3d-203ENSMUST00000122211 3886 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Rnf220Q6PDX6 Spo11-202ENSMUST00000109125 1591 ntAPPRIS ALT1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Rnf220Q6PDX6 Acsf3-201ENSMUST00000015160 2206 ntAPPRIS P2 TSL 5 BASIC12.05□□□□□ -0.48
Rnf220Q6PDX6 Snx33-201ENSMUST00000050916 4571 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Rnf220Q6PDX6 F730043M19Rik-204ENSMUST00000148740 3312 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Rnf220Q6PDX6 Enpp5-203ENSMUST00000154166 2490 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Rnf220Q6PDX6 Gatd1-201ENSMUST00000106008 1898 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Rnf220Q6PDX6 Pepd-201ENSMUST00000075068 1881 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Rnf220Q6PDX6 Mtap-201ENSMUST00000058030 2797 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Rnf220Q6PDX6 Rapsn-203ENSMUST00000111446 1458 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Rnf220Q6PDX6 Trappc5-202ENSMUST00000207787 4411 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
Rnf220Q6PDX6 Taf1a-201ENSMUST00000097043 1472 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Rnf220Q6PDX6 Catsper4-201ENSMUST00000055892 1725 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Rnf220Q6PDX6 Gm12585-201ENSMUST00000117307 290 ntBASIC12.04□□□□□ -0.48
Rnf220Q6PDX6 Zfp715-201ENSMUST00000012796 907 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Rnf220Q6PDX6 Gm27680-201ENSMUST00000184192 160 ntBASIC12.04□□□□□ -0.48
Rnf220Q6PDX6 Gm11214-201ENSMUST00000184252 552 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
Rnf220Q6PDX6 Tmem86b-204ENSMUST00000206610 522 ntTSL 3 BASIC12.04□□□□□ -0.48
Rnf220Q6PDX6 AC122305.4-201ENSMUST00000216159 1206 ntBASIC12.04□□□□□ -0.48
Rnf220Q6PDX6 AI463170-204ENSMUST00000220157 447 ntTSL 3 BASIC12.04□□□□□ -0.48
Rnf220Q6PDX6 Tssc1-207ENSMUST00000222407 489 ntTSL 3 BASIC12.04□□□□□ -0.48
Rnf220Q6PDX6 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Rnf220Q6PDX6 Cmc2-201ENSMUST00000078589 523 ntTSL 2 BASIC12.04□□□□□ -0.48
Rnf220Q6PDX6 Olfr1214-201ENSMUST00000099804 936 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
Rnf220Q6PDX6 Ankrd35-201ENSMUST00000048427 4052 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Rnf220Q6PDX6 Ywhaq-201ENSMUST00000049531 1515 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Rnf220Q6PDX6 Abhd18-202ENSMUST00000108078 2492 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Rnf220Q6PDX6 Tppp-201ENSMUST00000022057 5090 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Rnf220Q6PDX6 Cops4-201ENSMUST00000045993 1755 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Rnf220Q6PDX6 Ikzf2-202ENSMUST00000187184 2013 ntTSL 5 BASIC12.04□□□□□ -0.48
Rnf220Q6PDX6 Zic4-204ENSMUST00000172646 2535 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Rnf220Q6PDX6 Slc37a2-201ENSMUST00000115068 5943 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
Rnf220Q6PDX6 Ptx4-201ENSMUST00000054930 1582 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Rnf220Q6PDX6 Palb2-201ENSMUST00000063587 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Rnf220Q6PDX6 Gm17746-201ENSMUST00000223429 3772 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Rnf220Q6PDX6 Lgals3bp-201ENSMUST00000043722 2330 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Rnf220Q6PDX6 2810429I04Rik-203ENSMUST00000181708 4769 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Rnf220Q6PDX6 Ptcd3-201ENSMUST00000082094 2581 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Rnf220Q6PDX6 Gm5466-201ENSMUST00000119395 1890 ntBASIC12.04□□□□□ -0.48
Rnf220Q6PDX6 Aanat-205ENSMUST00000153476 1353 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Rnf220Q6PDX6 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Rnf220Q6PDX6 Ubl4b-201ENSMUST00000052853 1387 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
Rnf220Q6PDX6 Srr-203ENSMUST00000108448 3239 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Rnf220Q6PDX6 Inpp4a-211ENSMUST00000168546 2964 ntTSL 5 BASIC12.03□□□□□ -0.48
Rnf220Q6PDX6 Tubgcp2-201ENSMUST00000026547 2960 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Rnf220Q6PDX6 Camta1-201ENSMUST00000049790 8423 ntAPPRIS P2 TSL 5 BASIC12.03□□□□□ -0.48
Rnf220Q6PDX6 Usp24-201ENSMUST00000094933 10575 ntAPPRIS P2 TSL 5 BASIC12.03□□□□□ -0.48
Rnf220Q6PDX6 Hdac6-202ENSMUST00000115642 4069 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Rnf220Q6PDX6 Cfap157-201ENSMUST00000102813 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Rnf220Q6PDX6 Syncrip-210ENSMUST00000174391 6257 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Rnf220Q6PDX6 Prmt2-201ENSMUST00000020452 2016 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
Rnf220Q6PDX6 Rnf17-201ENSMUST00000095793 5264 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Rnf220Q6PDX6 Lnx1-204ENSMUST00000117388 2564 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Rnf220Q6PDX6 Pip5k1b-201ENSMUST00000025800 2573 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Rnf220Q6PDX6 Angpt4-201ENSMUST00000028955 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Rnf220Q6PDX6 Cdc42ep4-202ENSMUST00000106616 3405 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Rnf220Q6PDX6 Grm1-202ENSMUST00000105560 4265 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Rnf220Q6PDX6 Spata20-201ENSMUST00000041705 2627 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Rnf220Q6PDX6 Gm26819-201ENSMUST00000180656 5128 ntTSL 5 BASIC12.03□□□□□ -0.48
Rnf220Q6PDX6 Suclg1-201ENSMUST00000064740 1519 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 53.1 ms