Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Gm5441-202ENSMUST00000190132 449 ntTSL 2 BASIC14.72□□□□□ -0.05
Traf1P39428 Gm31256-201ENSMUST00000194705 506 ntBASIC14.72□□□□□ -0.05
Traf1P39428 Gm39185-201ENSMUST00000212941 540 ntTSL 5 BASIC14.72□□□□□ -0.05
Traf1P39428 Gm45925-201ENSMUST00000218882 744 ntBASIC14.72□□□□□ -0.05
Traf1P39428 Timm9-203ENSMUST00000220482 859 ntAPPRIS P1 TSL 3 BASIC14.72□□□□□ -0.05
Traf1P39428 AC122371.3-201ENSMUST00000223402 1061 ntBASIC14.72□□□□□ -0.05
Traf1P39428 Gm9843-201ENSMUST00000052867 504 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
Traf1P39428 Mir339-201ENSMUST00000083659 96 ntBASIC14.72□□□□□ -0.05
Traf1P39428 Wdr66-202ENSMUST00000121964 4873 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
Traf1P39428 Chfr-202ENSMUST00000112519 3159 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Traf1P39428 Mier3-203ENSMUST00000109272 5279 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Traf1P39428 Gm5385-201ENSMUST00000118988 1559 ntBASIC14.72□□□□□ -0.05
Traf1P39428 Hvcn1-201ENSMUST00000072602 2790 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Traf1P39428 Srsf10-205ENSMUST00000126641 3754 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Traf1P39428 Ccdc22-201ENSMUST00000033483 2353 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Traf1P39428 Mapk4-201ENSMUST00000091851 4594 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Traf1P39428 Ggnbp1-203ENSMUST00000133257 5012 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
Traf1P39428 Pitpnm2-204ENSMUST00000159677 1690 ntTSL 5 BASIC14.71□□□□□ -0.05
Traf1P39428 Acbd5-208ENSMUST00000226571 3802 ntAPPRIS ALT2 BASIC14.71□□□□□ -0.05
Traf1P39428 Sh2d7-202ENSMUST00000118413 1316 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Traf1P39428 Necab1-202ENSMUST00000108273 2135 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Traf1P39428 Gli2-201ENSMUST00000062483 6637 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Traf1P39428 Gm10561-201ENSMUST00000181563 1943 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Traf1P39428 Ext1-201ENSMUST00000077273 7663 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Traf1P39428 Hist1h4b-201ENSMUST00000102965 397 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
Traf1P39428 Rbm3-204ENSMUST00000115617 1152 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
Traf1P39428 Gm15236-201ENSMUST00000117309 379 ntBASIC14.71□□□□□ -0.05
Traf1P39428 Gm12058-201ENSMUST00000118614 437 ntBASIC14.71□□□□□ -0.05
Traf1P39428 Lage3-201ENSMUST00000015433 761 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Traf1P39428 Anapc16-205ENSMUST00000182912 566 ntTSL 2 BASIC14.71□□□□□ -0.05
Traf1P39428 Gm38241-201ENSMUST00000192641 898 ntBASIC14.71□□□□□ -0.05
Traf1P39428 Gm45881-201ENSMUST00000210659 517 ntTSL 5 BASIC14.71□□□□□ -0.05
Traf1P39428 Lypd2-201ENSMUST00000023260 513 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Traf1P39428 Tnnt3-201ENSMUST00000074187 1007 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
Traf1P39428 Cma2-201ENSMUST00000089555 947 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Traf1P39428 Cttnbp2nl-202ENSMUST00000098763 4834 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Traf1P39428 Bbof1-201ENSMUST00000081828 2187 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Traf1P39428 Pla2g2f-201ENSMUST00000030526 2465 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Traf1P39428 Pdcd6ip-202ENSMUST00000111861 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.06
Traf1P39428 Kpna7-203ENSMUST00000116454 1500 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.06
Traf1P39428 Ermard-202ENSMUST00000061688 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.06
Traf1P39428 Ccdc162-208ENSMUST00000179614 2739 ntTSL 5 BASIC14.71□□□□□ -0.06
Traf1P39428 Gm10544-201ENSMUST00000180516 2239 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Traf1P39428 2900069G24Rik-201ENSMUST00000192780 1311 ntBASIC14.7□□□□□ -0.06
Traf1P39428 Col26a1-202ENSMUST00000111103 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Traf1P39428 4931429P17Rik-201ENSMUST00000061899 2012 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Traf1P39428 Gtf2f1-201ENSMUST00000002733 1717 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Traf1P39428 Cd80-201ENSMUST00000099816 1701 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Traf1P39428 Ampd2-202ENSMUST00000102637 3586 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
Traf1P39428 Rab11fip1-202ENSMUST00000054212 7965 ntAPPRIS P3 TSL 5 BASIC14.7□□□□□ -0.06
Traf1P39428 Sema7a-201ENSMUST00000043059 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Traf1P39428 Cdk5rap3-201ENSMUST00000103152 2250 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Traf1P39428 2310007B03Rik-201ENSMUST00000043718 2299 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Traf1P39428 Tmod4-202ENSMUST00000107227 1260 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
Traf1P39428 Nipsnap3b-202ENSMUST00000107665 848 ntTSL 2 BASIC14.7□□□□□ -0.06
Traf1P39428 Thoc6-203ENSMUST00000115489 1083 ntTSL 5 BASIC14.7□□□□□ -0.06
Traf1P39428 Cabp2-202ENSMUST00000159556 781 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Traf1P39428 Nme9-202ENSMUST00000163199 1196 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
Traf1P39428 6430590A07Rik-201ENSMUST00000181813 1032 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Traf1P39428 Gm5597-201ENSMUST00000182353 1193 ntBASIC14.7□□□□□ -0.06
Traf1P39428 Gm11523-203ENSMUST00000184482 802 ntTSL 3 BASIC14.7□□□□□ -0.06
Traf1P39428 1700045I11Rik-201ENSMUST00000194752 493 ntBASIC14.7□□□□□ -0.06
Traf1P39428 4933436H12Rik-201ENSMUST00000207304 658 ntTSL 5 BASIC14.7□□□□□ -0.06
Traf1P39428 Gm45892-201ENSMUST00000212627 273 ntTSL 5 BASIC14.7□□□□□ -0.06
Traf1P39428 AC167013.1-201ENSMUST00000228592 202 ntBASIC14.7□□□□□ -0.06
Traf1P39428 1810062G17Rik-201ENSMUST00000029268 911 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Traf1P39428 Gm22058-201ENSMUST00000083393 310 ntBASIC14.7□□□□□ -0.06
Traf1P39428 Cnot3-201ENSMUST00000038913 2822 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Traf1P39428 Serpinb2-202ENSMUST00000064916 1996 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Traf1P39428 Skp2-203ENSMUST00000190131 1819 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Traf1P39428 Nek3-202ENSMUST00000110730 2050 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
Traf1P39428 Pianp-207ENSMUST00000162170 2053 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Traf1P39428 Adam33-202ENSMUST00000110232 3165 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
Traf1P39428 Ebag9-201ENSMUST00000022964 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Traf1P39428 Ispd-205ENSMUST00000221895 4022 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Traf1P39428 Tmem19-206ENSMUST00000218731 1346 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Traf1P39428 Nfat5-201ENSMUST00000075922 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Traf1P39428 Cd33-201ENSMUST00000004728 1962 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Traf1P39428 Chchd3-201ENSMUST00000066379 1550 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Traf1P39428 D6Ertd527e-203ENSMUST00000203747 2216 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
Traf1P39428 Aff4-201ENSMUST00000060945 10099 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Traf1P39428 Plet1-201ENSMUST00000114474 1689 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Traf1P39428 Gm44089-201ENSMUST00000203624 1930 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Traf1P39428 1700128E19Rik-201ENSMUST00000134409 2439 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Traf1P39428 Qdpr-202ENSMUST00000117425 1231 ntTSL 3 BASIC14.69□□□□□ -0.06
Traf1P39428 Gm2546-201ENSMUST00000182630 991 ntBASIC14.69□□□□□ -0.06
Traf1P39428 Gm4691-202ENSMUST00000182989 885 ntTSL 5 BASIC14.69□□□□□ -0.06
Traf1P39428 Gm8176-201ENSMUST00000191297 1099 ntBASIC14.69□□□□□ -0.06
Traf1P39428 Gm4959-201ENSMUST00000197271 1044 ntBASIC14.69□□□□□ -0.06
Traf1P39428 Hax1-206ENSMUST00000197786 857 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Traf1P39428 Gm44172-201ENSMUST00000203903 1235 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Traf1P39428 4933421D24Rik-201ENSMUST00000209302 1286 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Traf1P39428 Lsm7-201ENSMUST00000035775 468 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Traf1P39428 Cryba4-201ENSMUST00000086629 746 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Traf1P39428 Yipf6-201ENSMUST00000054697 5211 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Traf1P39428 Fancc-201ENSMUST00000073029 3165 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
Traf1P39428 Zbtb7b-203ENSMUST00000107433 3650 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Traf1P39428 Arrdc4-201ENSMUST00000048068 3905 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
Traf1P39428 Pag1-204ENSMUST00000161949 8256 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Traf1P39428 Glis2-201ENSMUST00000014447 3619 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 35.8 ms