Protein–RNA interactions for Protein: B9EHT4

Clip3, CAP-Gly domain-containing linker protein 3, mousemouse

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clip3B9EHT4 Gm5641-202ENSMUST00000198699 1080 ntBASIC12.4□□□□□ -0.42
Clip3B9EHT4 Gm44487-201ENSMUST00000205145 325 ntBASIC12.4□□□□□ -0.42
Clip3B9EHT4 Oit1-201ENSMUST00000022269 1253 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Clip3B9EHT4 Ambp-201ENSMUST00000030041 1268 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Clip3B9EHT4 Sit1-201ENSMUST00000030180 1228 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Clip3B9EHT4 Lats2-202ENSMUST00000038381 933 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Clip3B9EHT4 Olfr1346-201ENSMUST00000056144 1051 ntAPPRIS P1 BASIC12.4□□□□□ -0.42
Clip3B9EHT4 Otud6a-201ENSMUST00000060241 873 ntAPPRIS P1 BASIC12.4□□□□□ -0.42
Clip3B9EHT4 Chchd1-201ENSMUST00000071215 616 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Clip3B9EHT4 Bhmt-201ENSMUST00000099309 2490 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Clip3B9EHT4 Fyttd1-201ENSMUST00000023489 4312 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Clip3B9EHT4 Sgsm3-208ENSMUST00000139517 2996 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Clip3B9EHT4 Nono-201ENSMUST00000033673 2562 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Clip3B9EHT4 Vash2-201ENSMUST00000047409 4032 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Clip3B9EHT4 Gm26841-201ENSMUST00000180725 1787 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Clip3B9EHT4 Vipas39-203ENSMUST00000179379 2418 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Clip3B9EHT4 Tmem159-202ENSMUST00000118737 1395 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
Clip3B9EHT4 Ccdc167-202ENSMUST00000128751 1365 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Clip3B9EHT4 Grip1-212ENSMUST00000147356 4145 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Clip3B9EHT4 Lcmt2-202ENSMUST00000110674 3056 ntAPPRIS P1 BASIC12.4□□□□□ -0.42
Clip3B9EHT4 Dcaf4-208ENSMUST00000223291 2005 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Clip3B9EHT4 Cldn34c1-201ENSMUST00000113343 3301 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Clip3B9EHT4 Brd3-202ENSMUST00000077737 5272 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
Clip3B9EHT4 AC154262.2-201ENSMUST00000224310 2293 ntBASIC12.4□□□□□ -0.42
Clip3B9EHT4 Dnpep-209ENSMUST00000187836 1862 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
Clip3B9EHT4 Chp1-201ENSMUST00000014221 2609 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
Clip3B9EHT4 Mslnl-201ENSMUST00000047098 2628 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
Clip3B9EHT4 Mboat2-201ENSMUST00000078902 2467 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
Clip3B9EHT4 Foxb1-201ENSMUST00000071281 2984 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Clip3B9EHT4 Dgcr14-201ENSMUST00000003621 2819 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Clip3B9EHT4 Smc5-202ENSMUST00000223934 3448 ntAPPRIS P2 BASIC12.39□□□□□ -0.43
Clip3B9EHT4 5830418P13Rik-201ENSMUST00000143564 2178 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Clip3B9EHT4 Fam71f1-203ENSMUST00000164560 1411 ntAPPRIS P4 TSL 1 (best) BASIC12.39□□□□□ -0.43
Clip3B9EHT4 Kif3a-208ENSMUST00000173744 2257 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Clip3B9EHT4 Lzts3-201ENSMUST00000045761 4201 ntAPPRIS P3 TSL 5 BASIC12.39□□□□□ -0.43
Clip3B9EHT4 Kif28-202ENSMUST00000211943 2643 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
Clip3B9EHT4 Alpk3-201ENSMUST00000107348 6369 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Clip3B9EHT4 Cdk4-202ENSMUST00000120226 714 ntTSL 5 BASIC12.39□□□□□ -0.43
Clip3B9EHT4 Dgcr6-203ENSMUST00000143343 1280 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Clip3B9EHT4 Rabepk-207ENSMUST00000145903 2968 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Clip3B9EHT4 Ube2m-208ENSMUST00000165394 1228 ntTSL 5 BASIC12.39□□□□□ -0.43
Clip3B9EHT4 Pyy-204ENSMUST00000177304 551 ntAPPRIS ALT2 TSL 2 BASIC12.39□□□□□ -0.43
Clip3B9EHT4 1600014C10Rik-203ENSMUST00000177983 403 ntTSL 2 BASIC12.39□□□□□ -0.43
Clip3B9EHT4 Gm45331-201ENSMUST00000209868 554 ntBASIC12.39□□□□□ -0.43
Clip3B9EHT4 Pfas-201ENSMUST00000021282 6373 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
Clip3B9EHT4 Smpd2-201ENSMUST00000019965 1602 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Clip3B9EHT4 Arhgap22-202ENSMUST00000111956 2596 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Clip3B9EHT4 Nab1-204ENSMUST00000170269 1371 ntTSL 5 BASIC12.39□□□□□ -0.43
Clip3B9EHT4 Gan-201ENSMUST00000064488 2652 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Clip3B9EHT4 Gm37368-201ENSMUST00000193173 3212 ntBASIC12.39□□□□□ -0.43
Clip3B9EHT4 Nhlh2-203ENSMUST00000198675 3943 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
Clip3B9EHT4 Lrrc3-201ENSMUST00000057608 4296 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Clip3B9EHT4 Slc29a1-209ENSMUST00000166119 1598 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
Clip3B9EHT4 Gm38355-201ENSMUST00000192514 1570 ntBASIC12.39□□□□□ -0.43
Clip3B9EHT4 Ttc8-202ENSMUST00000085109 2272 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Clip3B9EHT4 Gm13722-201ENSMUST00000117964 3066 ntBASIC12.39□□□□□ -0.43
Clip3B9EHT4 Vrtn-202ENSMUST00000166772 3098 ntAPPRIS P1 TSL 3 BASIC12.39□□□□□ -0.43
Clip3B9EHT4 Rpusd2-201ENSMUST00000028796 2706 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Clip3B9EHT4 Zc3h6-202ENSMUST00000110320 4916 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
Clip3B9EHT4 Myh2-203ENSMUST00000170159 6083 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
Clip3B9EHT4 H2-T22-202ENSMUST00000077960 1694 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
Clip3B9EHT4 Kiss1r-201ENSMUST00000045529 3163 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Clip3B9EHT4 Ssh1-201ENSMUST00000077689 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Clip3B9EHT4 Spata5-209ENSMUST00000198968 2916 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Clip3B9EHT4 Cfap77-204ENSMUST00000189711 1759 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
Clip3B9EHT4 Gsdmd-201ENSMUST00000023238 1776 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Clip3B9EHT4 S100pbp-205ENSMUST00000117350 2241 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Clip3B9EHT4 Skp1a-201ENSMUST00000037324 1440 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Clip3B9EHT4 Ebf2-202ENSMUST00000176029 2784 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Clip3B9EHT4 Bcas3-202ENSMUST00000092821 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Clip3B9EHT4 AC154725.1-201ENSMUST00000224826 1961 ntBASIC12.38□□□□□ -0.43
Clip3B9EHT4 Trpc7-207ENSMUST00000173817 2406 ntTSL 5 BASIC12.38□□□□□ -0.43
Clip3B9EHT4 Trpc7-208ENSMUST00000174457 2424 ntTSL 5 BASIC12.38□□□□□ -0.43
Clip3B9EHT4 Ctsa-203ENSMUST00000103093 2534 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Clip3B9EHT4 Got1-201ENSMUST00000026196 2058 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Clip3B9EHT4 Cacna1c-227ENSMUST00000220022 7765 ntTSL 5 BASIC12.38□□□□□ -0.43
Clip3B9EHT4 Ighv2-9-201ENSMUST00000103451 362 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
Clip3B9EHT4 Aurkaip1-202ENSMUST00000105591 773 ntAPPRIS P1 TSL 3 BASIC12.38□□□□□ -0.43
Clip3B9EHT4 Gm16479-201ENSMUST00000121706 932 ntBASIC12.38□□□□□ -0.43
Clip3B9EHT4 6330418K02Rik-201ENSMUST00000124298 743 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Clip3B9EHT4 1700037C18Rik-205ENSMUST00000177323 915 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
Clip3B9EHT4 Cox6b2-204ENSMUST00000182173 391 ntTSL 2 BASIC12.38□□□□□ -0.43
Clip3B9EHT4 Gm28380-201ENSMUST00000188800 385 ntTSL 5 BASIC12.38□□□□□ -0.43
Clip3B9EHT4 Lsmem2-201ENSMUST00000191791 369 ntTSL 3 BASIC12.38□□□□□ -0.43
Clip3B9EHT4 Alkbh3-201ENSMUST00000040005 1228 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Clip3B9EHT4 Coro6-203ENSMUST00000079770 1298 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Clip3B9EHT4 Prickle1-202ENSMUST00000109255 4144 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Clip3B9EHT4 Sorbs3-202ENSMUST00000227259 2481 ntAPPRIS ALT2 BASIC12.38□□□□□ -0.43
Clip3B9EHT4 Capn11-201ENSMUST00000120717 2591 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Clip3B9EHT4 Tekt2-201ENSMUST00000030658 1492 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Clip3B9EHT4 Clcn6-201ENSMUST00000030879 3306 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Clip3B9EHT4 Gcdh-202ENSMUST00000109745 2114 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
Clip3B9EHT4 Kif13a-201ENSMUST00000056978 6866 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Clip3B9EHT4 Klhl26-205ENSMUST00000210250 2974 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Clip3B9EHT4 Fbxl12-207ENSMUST00000151861 1668 ntTSL 2 BASIC12.38□□□□□ -0.43
Clip3B9EHT4 Msi2-203ENSMUST00000107909 6436 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Clip3B9EHT4 Arhgap30-201ENSMUST00000056449 4494 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Clip3B9EHT4 Jrk-201ENSMUST00000050234 5853 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Clip3B9EHT4 Hspa2-202ENSMUST00000219555 2526 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
Clip3B9EHT4 5430419D17Rik-201ENSMUST00000050586 2928 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 37.5 ms