Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Gm12203-201ENSMUST00000118235 598 ntBASIC12.01□□□□□ -0.49
Trim3Q9R1R2 Gm12209-201ENSMUST00000120089 596 ntBASIC12.01□□□□□ -0.49
Trim3Q9R1R2 Atpif1-203ENSMUST00000152993 462 ntTSL 2 BASIC12.01□□□□□ -0.49
Trim3Q9R1R2 Tldc2-202ENSMUST00000166140 639 ntAPPRIS P2 TSL 5 BASIC12.01□□□□□ -0.49
Trim3Q9R1R2 Aif1-206ENSMUST00000173324 875 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim3Q9R1R2 Krtap16-3-201ENSMUST00000179707 601 ntAPPRIS P1 BASIC12.01□□□□□ -0.49
Trim3Q9R1R2 2610300A13Rik-201ENSMUST00000192930 503 ntBASIC12.01□□□□□ -0.49
Trim3Q9R1R2 Gm19931-201ENSMUST00000198920 368 ntBASIC12.01□□□□□ -0.49
Trim3Q9R1R2 Tgif2-ps1-201ENSMUST00000203590 713 ntBASIC12.01□□□□□ -0.49
Trim3Q9R1R2 Psd-210ENSMUST00000225323 3398 ntAPPRIS ALT2 BASIC12.01□□□□□ -0.49
Trim3Q9R1R2 Stox2-209ENSMUST00000211882 9696 ntTSL 5 BASIC12.01□□□□□ -0.49
Trim3Q9R1R2 Brms1-201ENSMUST00000116567 1338 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim3Q9R1R2 Ninj1-202ENSMUST00000120733 1321 ntTSL 5 BASIC12.01□□□□□ -0.49
Trim3Q9R1R2 Unc45bos-201ENSMUST00000156395 1306 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Trim3Q9R1R2 Gm38100-201ENSMUST00000194391 1329 ntAPPRIS ALT2 BASIC12.01□□□□□ -0.49
Trim3Q9R1R2 Usp19-210ENSMUST00000193678 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim3Q9R1R2 Gm9866-202ENSMUST00000182473 1882 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Trim3Q9R1R2 Stx3-203ENSMUST00000075304 2430 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Trim3Q9R1R2 Zbtb16-201ENSMUST00000093852 5114 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim3Q9R1R2 B3gat2-201ENSMUST00000063663 5655 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim3Q9R1R2 Klhl26-201ENSMUST00000066597 2991 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim3Q9R1R2 Gm28323-201ENSMUST00000186817 2499 ntBASIC12.01□□□□□ -0.49
Trim3Q9R1R2 Tspan13-201ENSMUST00000020896 1932 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim3Q9R1R2 Fam214b-205ENSMUST00000107959 3060 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim3Q9R1R2 Ocln-203ENSMUST00000159459 1950 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Trim3Q9R1R2 Nr3c1-201ENSMUST00000025300 4989 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim3Q9R1R2 Gm20605-201ENSMUST00000177545 4464 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.49
Trim3Q9R1R2 Snap23-203ENSMUST00000116437 2730 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Trim3Q9R1R2 Ate1-204ENSMUST00000178534 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim3Q9R1R2 Accsl-201ENSMUST00000099690 2224 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim3Q9R1R2 Snrk-203ENSMUST00000120173 4758 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Trim3Q9R1R2 Git1-201ENSMUST00000037285 3512 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
Trim3Q9R1R2 Vsir-203ENSMUST00000105460 4843 ntAPPRIS ALT1 TSL 1 (best) BASIC12□□□□□ -0.49
Trim3Q9R1R2 Vsir-201ENSMUST00000020301 4846 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
Trim3Q9R1R2 Afmid-201ENSMUST00000073388 2327 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Trim3Q9R1R2 Gm8798-201ENSMUST00000211877 1661 ntBASIC12□□□□□ -0.49
Trim3Q9R1R2 Sgk3-202ENSMUST00000166384 3706 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Trim3Q9R1R2 Poc1b-203ENSMUST00000159228 1799 ntTSL 1 (best) BASIC12□□□□□ -0.49
Trim3Q9R1R2 Olfr157-202ENSMUST00000215442 1766 ntAPPRIS P1 BASIC12□□□□□ -0.49
Trim3Q9R1R2 Rubcn-202ENSMUST00000089684 5311 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Trim3Q9R1R2 Csrnp3-202ENSMUST00000112394 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Trim3Q9R1R2 Vash2-201ENSMUST00000047409 4032 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Trim3Q9R1R2 2810430I11Rik-201ENSMUST00000154246 3416 ntTSL 1 (best) BASIC12□□□□□ -0.49
Trim3Q9R1R2 Plekhb1-204ENSMUST00000107045 1919 ntAPPRIS ALT1 TSL 1 (best) BASIC12□□□□□ -0.49
Trim3Q9R1R2 Slc6a18-208ENSMUST00000222029 2005 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
Trim3Q9R1R2 Pcid2-201ENSMUST00000164416 2860 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Trim3Q9R1R2 Timm10b-202ENSMUST00000106780 671 ntAPPRIS P2 TSL 2 BASIC12□□□□□ -0.49
Trim3Q9R1R2 Birc7-201ENSMUST00000108875 1178 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
Trim3Q9R1R2 Agbl3-202ENSMUST00000115012 790 ntTSL 3 BASIC12□□□□□ -0.49
Trim3Q9R1R2 Agbl3-203ENSMUST00000115014 805 ntTSL 1 (best) BASIC12□□□□□ -0.49
Trim3Q9R1R2 Ssr4-208ENSMUST00000166518 800 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Trim3Q9R1R2 Smad7-204ENSMUST00000174411 769 ntTSL 5 BASIC12□□□□□ -0.49
Trim3Q9R1R2 Ffar3-202ENSMUST00000185748 1234 ntAPPRIS P1 BASIC12□□□□□ -0.49
Trim3Q9R1R2 Mturn-202ENSMUST00000187701 503 ntTSL 5 BASIC12□□□□□ -0.49
Trim3Q9R1R2 Gm45784-201ENSMUST00000188360 142 ntBASIC12□□□□□ -0.49
Trim3Q9R1R2 Gm38293-201ENSMUST00000193209 600 ntTSL 2 BASIC12□□□□□ -0.49
Trim3Q9R1R2 Myl10-202ENSMUST00000196068 911 ntTSL 1 (best) BASIC12□□□□□ -0.49
Trim3Q9R1R2 Myl10-203ENSMUST00000196436 598 ntTSL 3 BASIC12□□□□□ -0.49
Trim3Q9R1R2 C030018K13Rik-202ENSMUST00000196829 712 ntTSL 3 BASIC12□□□□□ -0.49
Trim3Q9R1R2 Gm44069-201ENSMUST00000204898 506 ntBASIC12□□□□□ -0.49
Trim3Q9R1R2 Gm9299-201ENSMUST00000206392 1140 ntBASIC12□□□□□ -0.49
Trim3Q9R1R2 Gm29705-201ENSMUST00000212598 474 ntBASIC12□□□□□ -0.49
Trim3Q9R1R2 AC122459.1-201ENSMUST00000228373 885 ntBASIC12□□□□□ -0.49
Trim3Q9R1R2 Mdk-201ENSMUST00000028672 1054 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Trim3Q9R1R2 Tomm7-201ENSMUST00000030851 1125 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Trim3Q9R1R2 Rnase2b-201ENSMUST00000075648 759 ntAPPRIS P1 BASIC12□□□□□ -0.49
Trim3Q9R1R2 Gm10244-201ENSMUST00000090237 830 ntTSL 1 (best) BASIC12□□□□□ -0.49
Trim3Q9R1R2 Tpd52-204ENSMUST00000094381 1074 ntTSL 3 BASIC12□□□□□ -0.49
Trim3Q9R1R2 Hyal1-204ENSMUST00000144392 1332 ntTSL 5 BASIC12□□□□□ -0.49
Trim3Q9R1R2 Spryd7-201ENSMUST00000022497 4002 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Trim3Q9R1R2 Washc5-201ENSMUST00000022976 4033 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Trim3Q9R1R2 Armc7-201ENSMUST00000035240 2260 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Trim3Q9R1R2 Prok2-203ENSMUST00000101120 1450 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Trim3Q9R1R2 Bcl6-201ENSMUST00000023151 3525 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Trim3Q9R1R2 Suclg1-201ENSMUST00000064740 1519 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Trim3Q9R1R2 Stx17-201ENSMUST00000064765 1531 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
Trim3Q9R1R2 Cd247-201ENSMUST00000005907 1632 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Trim3Q9R1R2 BC027072-201ENSMUST00000057405 5004 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Trim3Q9R1R2 4930444K16Rik-201ENSMUST00000220438 1767 ntBASIC12□□□□□ -0.49
Trim3Q9R1R2 Gypa-201ENSMUST00000063359 1848 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Trim3Q9R1R2 Treh-202ENSMUST00000071219 1927 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Trim3Q9R1R2 Zfp41-201ENSMUST00000054555 3736 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Trim3Q9R1R2 Pyroxd1-201ENSMUST00000041852 2831 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Trim3Q9R1R2 Gm26905-201ENSMUST00000180798 6621 ntTSL 5 BASIC11.99□□□□□ -0.49
Trim3Q9R1R2 AC122840.1-201ENSMUST00000220915 3334 ntBASIC11.99□□□□□ -0.49
Trim3Q9R1R2 Gm11618-201ENSMUST00000117946 267 ntBASIC11.99□□□□□ -0.49
Trim3Q9R1R2 Gm14660-201ENSMUST00000119809 575 ntBASIC11.99□□□□□ -0.49
Trim3Q9R1R2 Gm12945-201ENSMUST00000140080 674 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Trim3Q9R1R2 AY702102-202ENSMUST00000194651 1173 ntBASIC11.99□□□□□ -0.49
Trim3Q9R1R2 Gm37922-201ENSMUST00000195596 455 ntBASIC11.99□□□□□ -0.49
Trim3Q9R1R2 Gm44985-201ENSMUST00000206202 1016 ntBASIC11.99□□□□□ -0.49
Trim3Q9R1R2 AC153962.4-201ENSMUST00000217878 242 ntBASIC11.99□□□□□ -0.49
Trim3Q9R1R2 Kitl-204ENSMUST00000218200 564 ntTSL 5 BASIC11.99□□□□□ -0.49
Trim3Q9R1R2 Atp6v0c-201ENSMUST00000024932 1183 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Trim3Q9R1R2 Exosc7-201ENSMUST00000026891 1053 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Trim3Q9R1R2 Fau-201ENSMUST00000043074 574 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Trim3Q9R1R2 Upk2-201ENSMUST00000047740 1083 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Trim3Q9R1R2 Rpsa-ps10-201ENSMUST00000057740 885 ntBASIC11.99□□□□□ -0.49
Trim3Q9R1R2 Fam241b-202ENSMUST00000064050 1096 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
Trim3Q9R1R2 Tmem107-201ENSMUST00000075980 779 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 53.7 ms