Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Rph3a-203ENSMUST00000202326 2621 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Usf1Q61069 Dync1i2-202ENSMUST00000100028 2097 ntTSL 5 BASIC11.59□□□□□ -0.55
Usf1Q61069 Crem-233ENSMUST00000154135 2530 ntTSL 5 BASIC11.59□□□□□ -0.55
Usf1Q61069 Slc35c2-202ENSMUST00000109298 1991 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Usf1Q61069 Ikzf1-201ENSMUST00000018798 1542 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Usf1Q61069 Tekt4-201ENSMUST00000025002 1532 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Usf1Q61069 Olfr317-203ENSMUST00000216196 2781 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
Usf1Q61069 Cgnl1-202ENSMUST00000121322 6541 ntAPPRIS ALT2 TSL 5 BASIC11.59□□□□□ -0.55
Usf1Q61069 Nptn-206ENSMUST00000176557 1898 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Usf1Q61069 Esam-201ENSMUST00000002011 1865 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Usf1Q61069 Zc3h7b-201ENSMUST00000109554 5958 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Usf1Q61069 Gm13187-202ENSMUST00000133873 1321 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Usf1Q61069 Cops7b-202ENSMUST00000121534 5383 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
Usf1Q61069 Mmp2-201ENSMUST00000034187 3078 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.55
Usf1Q61069 Rbm34-201ENSMUST00000045994 3424 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.55
Usf1Q61069 Slco3a1-203ENSMUST00000107453 3793 ntTSL 1 (best) BASIC11.58□□□□□ -0.55
Usf1Q61069 Adgrv1-206ENSMUST00000128120 1591 ntTSL 1 (best) BASIC11.58□□□□□ -0.55
Usf1Q61069 Spert-202ENSMUST00000164082 1560 ntAPPRIS ALT2 TSL 2 BASIC11.58□□□□□ -0.55
Usf1Q61069 Cabp7-201ENSMUST00000009219 2628 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.55
Usf1Q61069 Vwa8-201ENSMUST00000040990 7054 ntAPPRIS P2 TSL 5 BASIC11.58□□□□□ -0.56
Usf1Q61069 Igsf8-204ENSMUST00000139528 2866 ntTSL 2 BASIC11.58□□□□□ -0.56
Usf1Q61069 Prss30-201ENSMUST00000024936 1470 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Usf1Q61069 Diaph1-204ENSMUST00000115631 5741 ntAPPRIS ALT2 TSL 5 BASIC11.58□□□□□ -0.56
Usf1Q61069 Cacna1g-204ENSMUST00000107785 7523 ntAPPRIS ALT2 TSL 5 BASIC11.58□□□□□ -0.56
Usf1Q61069 Prx-203ENSMUST00000108355 5433 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Usf1Q61069 Zyx-201ENSMUST00000070635 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
Usf1Q61069 Gm37691-201ENSMUST00000192147 2573 ntBASIC11.58□□□□□ -0.56
Usf1Q61069 Nr4a2-203ENSMUST00000112629 3422 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.56
Usf1Q61069 Ncln-202ENSMUST00000118498 2841 ntAPPRIS ALT1 TSL 5 BASIC11.58□□□□□ -0.56
Usf1Q61069 Grm6-201ENSMUST00000000631 4291 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.56
Usf1Q61069 Dnpep-209ENSMUST00000187836 1862 ntAPPRIS P3 TSL 1 (best) BASIC11.58□□□□□ -0.56
Usf1Q61069 Gm23949-201ENSMUST00000104027 127 ntBASIC11.58□□□□□ -0.56
Usf1Q61069 Tm2d3-203ENSMUST00000107495 1003 ntAPPRIS P4 TSL 5 BASIC11.58□□□□□ -0.56
Usf1Q61069 Gm12380-201ENSMUST00000119012 544 ntBASIC11.58□□□□□ -0.56
Usf1Q61069 Tspan5-202ENSMUST00000119993 2107 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Usf1Q61069 Gm8566-201ENSMUST00000120174 465 ntBASIC11.58□□□□□ -0.56
Usf1Q61069 Uox-202ENSMUST00000121133 768 ntTSL 5 BASIC11.58□□□□□ -0.56
Usf1Q61069 Ccdc127-205ENSMUST00000162672 677 ntTSL 3 BASIC11.58□□□□□ -0.56
Usf1Q61069 Slc6a9-209ENSMUST00000163288 2107 ntTSL 5 BASIC11.58□□□□□ -0.56
Usf1Q61069 Gm17168-201ENSMUST00000169146 345 ntTSL 5 BASIC11.58□□□□□ -0.56
Usf1Q61069 Gm28192-201ENSMUST00000189381 778 ntTSL 5 BASIC11.58□□□□□ -0.56
Usf1Q61069 Gm28071-201ENSMUST00000190355 478 ntBASIC11.58□□□□□ -0.56
Usf1Q61069 AY036118-201ENSMUST00000200021 923 ntBASIC11.58□□□□□ -0.56
Usf1Q61069 Gm35082-202ENSMUST00000208164 525 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Usf1Q61069 Rpl17-ps3-201ENSMUST00000221295 556 ntBASIC11.58□□□□□ -0.56
Usf1Q61069 AC140293.1-201ENSMUST00000225626 1247 ntBASIC11.58□□□□□ -0.56
Usf1Q61069 Mlf1-201ENSMUST00000061322 1113 ntAPPRIS P4 TSL 1 (best) BASIC11.58□□□□□ -0.56
Usf1Q61069 Wfdc21-201ENSMUST00000070832 434 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Usf1Q61069 Kcnd3-201ENSMUST00000079169 2102 ntAPPRIS P4 TSL 1 (best) BASIC11.58□□□□□ -0.56
Usf1Q61069 Prrxl1-202ENSMUST00000186452 2371 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.56
Usf1Q61069 Spef1-202ENSMUST00000110218 2600 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Usf1Q61069 Sirt4-201ENSMUST00000112066 1794 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Usf1Q61069 Slc25a14-201ENSMUST00000033431 1760 ntAPPRIS P3 TSL 1 (best) BASIC11.58□□□□□ -0.56
Usf1Q61069 Pappa-201ENSMUST00000084501 11027 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Usf1Q61069 Sec23b-201ENSMUST00000028916 2779 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Usf1Q61069 Kcnq1-201ENSMUST00000009689 3029 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Usf1Q61069 Fam160a2-204ENSMUST00000122327 3521 ntAPPRIS P3 TSL 1 (best) BASIC11.58□□□□□ -0.56
Usf1Q61069 Cfap45-201ENSMUST00000085894 1908 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Usf1Q61069 Rec8-201ENSMUST00000002395 2184 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Usf1Q61069 Tcirg1-201ENSMUST00000001801 2688 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Usf1Q61069 Ralyl-206ENSMUST00000193117 2933 ntAPPRIS P1 TSL 2 BASIC11.58□□□□□ -0.56
Usf1Q61069 Vps26b-201ENSMUST00000034470 3575 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Usf1Q61069 Kcnj3-201ENSMUST00000067101 5215 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Usf1Q61069 Actg2-201ENSMUST00000075161 1333 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Usf1Q61069 Pam-202ENSMUST00000097625 4102 ntAPPRIS P2 TSL 5 BASIC11.58□□□□□ -0.56
Usf1Q61069 Gm42878-202ENSMUST00000200170 4783 ntAPPRIS P1 TSL 2 BASIC11.58□□□□□ -0.56
Usf1Q61069 Yeats2-201ENSMUST00000090052 5997 ntAPPRIS P3 TSL 1 (best) BASIC11.57□□□□□ -0.56
Usf1Q61069 Mfsd1-201ENSMUST00000029344 3011 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Usf1Q61069 Plcxd3-201ENSMUST00000061925 1851 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Usf1Q61069 Vmn1r198-202ENSMUST00000226786 6195 ntAPPRIS P2 BASIC11.57□□□□□ -0.56
Usf1Q61069 Slc22a15-201ENSMUST00000106928 6573 ntAPPRIS P1 TSL 5 BASIC11.57□□□□□ -0.56
Usf1Q61069 Rbm33-201ENSMUST00000030920 3955 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Usf1Q61069 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Usf1Q61069 Zfp862-ps-204ENSMUST00000204484 6065 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Usf1Q61069 Phyhd1-202ENSMUST00000091132 1353 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Usf1Q61069 Abat-203ENSMUST00000115839 2414 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Usf1Q61069 Marveld3-202ENSMUST00000051430 2447 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Usf1Q61069 Tufm-202ENSMUST00000106392 1754 ntTSL 2 BASIC11.57□□□□□ -0.56
Usf1Q61069 Tcf4-226ENSMUST00000201094 2172 ntTSL 5 BASIC11.57□□□□□ -0.56
Usf1Q61069 Angptl7-201ENSMUST00000030840 2157 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Usf1Q61069 Cttnbp2nl-202ENSMUST00000098763 4834 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Usf1Q61069 Ncor2-204ENSMUST00000111394 7452 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Usf1Q61069 Gpr45-203ENSMUST00000179766 3776 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Usf1Q61069 Unc5d-201ENSMUST00000168630 9220 ntAPPRIS P3 TSL 1 (best) BASIC11.57□□□□□ -0.56
Usf1Q61069 Olfr56-201ENSMUST00000056759 1925 ntTSL 5 BASIC11.57□□□□□ -0.56
Usf1Q61069 Gm33195-201ENSMUST00000220827 2337 ntTSL 5 BASIC11.57□□□□□ -0.56
Usf1Q61069 Bptf-203ENSMUST00000106763 12036 ntAPPRIS ALT2 TSL 5 BASIC11.57□□□□□ -0.56
Usf1Q61069 Suv39h1-203ENSMUST00000115638 3116 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Usf1Q61069 Usp1-202ENSMUST00000091358 3527 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Usf1Q61069 Pax5-204ENSMUST00000107826 1228 ntTSL 5 BASIC11.57□□□□□ -0.56
Usf1Q61069 Gm15711-201ENSMUST00000118889 535 ntBASIC11.57□□□□□ -0.56
Usf1Q61069 Gm15479-201ENSMUST00000139309 1133 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Usf1Q61069 Gm16296-201ENSMUST00000159905 325 ntBASIC11.57□□□□□ -0.56
Usf1Q61069 Arid3b-204ENSMUST00000164010 1259 ntTSL 5 BASIC11.57□□□□□ -0.56
Usf1Q61069 Gm17040-201ENSMUST00000168672 548 ntTSL 3 BASIC11.57□□□□□ -0.56
Usf1Q61069 Gm7593-201ENSMUST00000187246 644 ntBASIC11.57□□□□□ -0.56
Usf1Q61069 4833445I07Rik-202ENSMUST00000194104 579 ntTSL 3 BASIC11.57□□□□□ -0.56
Usf1Q61069 Gm44551-201ENSMUST00000208804 171 ntBASIC11.57□□□□□ -0.56
Usf1Q61069 Mob2-203ENSMUST00000209732 977 ntAPPRIS ALT2 TSL 3 BASIC11.57□□□□□ -0.56
Usf1Q61069 Pex11b-201ENSMUST00000048766 1122 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Retrieved 100 of 76,532 protein–RNA pairs in 29 ms