Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Ctbs-202ENSMUST00000061937 2892 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Cux1P53564 Bhmt-201ENSMUST00000099309 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Cux1P53564 Chtop-206ENSMUST00000107344 2972 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Cux1P53564 Gm5136-201ENSMUST00000218023 1397 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
Cux1P53564 5930412G12Rik-203ENSMUST00000134673 2087 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Cux1P53564 Spib-201ENSMUST00000035323 2788 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cux1P53564 Zfp207-206ENSMUST00000165565 2311 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Cux1P53564 Capn9-201ENSMUST00000093033 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cux1P53564 Edem3-203ENSMUST00000188145 3262 ntTSL 5 BASIC19.23■□□□□ 0.67
Cux1P53564 Dnaja1-210ENSMUST00000164233 5622 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Cux1P53564 Ablim2-201ENSMUST00000054598 3564 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cux1P53564 Nox3-201ENSMUST00000115800 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cux1P53564 Tprkb-203ENSMUST00000113751 692 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Cux1P53564 Gm14665-201ENSMUST00000122294 557 ntBASIC19.23■□□□□ 0.67
Cux1P53564 Zfp229-206ENSMUST00000183192 653 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Cux1P53564 Stpg4-202ENSMUST00000186211 591 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
Cux1P53564 1700088E04Rik-206ENSMUST00000187550 1168 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Cux1P53564 5830428M24Rik-204ENSMUST00000223143 1034 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Cux1P53564 Mcpt1-201ENSMUST00000022836 1014 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cux1P53564 Tmem258-201ENSMUST00000040372 606 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cux1P53564 Ldlrad3-201ENSMUST00000058790 3833 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cux1P53564 Itfg2-201ENSMUST00000001559 2320 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cux1P53564 Ate1-202ENSMUST00000035458 4685 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cux1P53564 Actn4-211ENSMUST00000217157 3530 ntTSL 5 BASIC19.23■□□□□ 0.67
Cux1P53564 Cdk18-201ENSMUST00000027697 4355 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cux1P53564 Gprin1-201ENSMUST00000099506 4141 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cux1P53564 Afmid-201ENSMUST00000073388 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cux1P53564 Mir17hg-201ENSMUST00000134140 3536 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Cux1P53564 Arhgap27os3-201ENSMUST00000124462 2729 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Cux1P53564 Atg7-210ENSMUST00000182793 2459 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cux1P53564 Tspan12-201ENSMUST00000031678 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cux1P53564 Tcn2-201ENSMUST00000020710 1897 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Cux1P53564 Sfxn3-202ENSMUST00000084493 2843 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Cux1P53564 Pcp4l1-201ENSMUST00000111332 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cux1P53564 Rpl11-201ENSMUST00000102536 833 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cux1P53564 Gm16166-201ENSMUST00000118291 787 ntBASIC19.22■□□□□ 0.67
Cux1P53564 Gm8100-201ENSMUST00000182906 988 ntBASIC19.22■□□□□ 0.67
Cux1P53564 C530044C16Rik-202ENSMUST00000205217 1239 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Cux1P53564 1700011B04Rik-212ENSMUST00000223526 889 ntTSL 5 BASIC19.22■□□□□ 0.67
Cux1P53564 Zfp618-202ENSMUST00000064814 2868 ntAPPRIS P2 TSL 5 BASIC19.22■□□□□ 0.67
Cux1P53564 Fam227a-204ENSMUST00000187519 2283 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cux1P53564 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cux1P53564 Espn-220ENSMUST00000207676 4618 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Cux1P53564 Mpp3-202ENSMUST00000100400 2997 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cux1P53564 Mettl14-201ENSMUST00000029759 2741 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cux1P53564 Zdhhc15-201ENSMUST00000042070 5509 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cux1P53564 Plcb3-201ENSMUST00000025912 4201 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cux1P53564 Rab9b-201ENSMUST00000058814 3980 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cux1P53564 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cux1P53564 Zbp1-201ENSMUST00000029018 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cux1P53564 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cux1P53564 Gm12579-201ENSMUST00000118040 783 ntBASIC19.21■□□□□ 0.67
Cux1P53564 Gm11831-201ENSMUST00000141538 629 ntTSL 3 BASIC19.21■□□□□ 0.67
Cux1P53564 Tspo2-205ENSMUST00000162481 473 ntTSL 5 BASIC19.21■□□□□ 0.67
Cux1P53564 Prox2os-201ENSMUST00000177043 1133 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Cux1P53564 Rpl31-202ENSMUST00000178079 487 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
Cux1P53564 Gm16740-201ENSMUST00000181819 956 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Cux1P53564 Rpl36-ps9-201ENSMUST00000196458 277 ntBASIC19.21■□□□□ 0.67
Cux1P53564 Gm7600-201ENSMUST00000209657 785 ntBASIC19.21■□□□□ 0.67
Cux1P53564 AC156504.2-201ENSMUST00000213800 711 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Cux1P53564 AC153505.1-201ENSMUST00000218819 1071 ntBASIC19.21■□□□□ 0.67
Cux1P53564 Prss52-201ENSMUST00000022537 1064 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cux1P53564 Tagln3-201ENSMUST00000096057 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cux1P53564 Gm33543-203ENSMUST00000211096 1722 ntAPPRIS P5 TSL 5 BASIC19.21■□□□□ 0.67
Cux1P53564 Thap1-201ENSMUST00000036807 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cux1P53564 Pepd-201ENSMUST00000075068 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cux1P53564 Map3k20-201ENSMUST00000090824 3334 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cux1P53564 Rhox9-202ENSMUST00000170643 2422 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Cux1P53564 Tsku-205ENSMUST00000167405 2597 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Cux1P53564 Gm45253-201ENSMUST00000210694 2076 ntTSL 5 BASIC19.21■□□□□ 0.67
Cux1P53564 Nup98-206ENSMUST00000211235 3748 ntTSL 5 BASIC19.21■□□□□ 0.67
Cux1P53564 Kcnn1-201ENSMUST00000110078 4047 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cux1P53564 AC158355.1-201ENSMUST00000215895 1705 ntBASIC19.21■□□□□ 0.67
Cux1P53564 Eif4g1-202ENSMUST00000073840 5394 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Cux1P53564 Micu1-204ENSMUST00000165563 2442 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cux1P53564 Nfatc1-204ENSMUST00000170905 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.66
Cux1P53564 Nomo1-201ENSMUST00000033121 4257 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.66
Cux1P53564 Ccl27a-206ENSMUST00000108037 590 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
Cux1P53564 Gm12857-201ENSMUST00000117678 592 ntBASIC19.2■□□□□ 0.66
Cux1P53564 Gm22144-201ENSMUST00000157402 102 ntBASIC19.2■□□□□ 0.66
Cux1P53564 Rprl1-201ENSMUST00000158050 327 ntBASIC19.2■□□□□ 0.66
Cux1P53564 Mir8115-201ENSMUST00000184992 119 ntBASIC19.2■□□□□ 0.66
Cux1P53564 Gm37905-201ENSMUST00000195310 341 ntBASIC19.2■□□□□ 0.66
Cux1P53564 Gm2965-201ENSMUST00000198365 343 ntBASIC19.2■□□□□ 0.66
Cux1P53564 4930430O22Rik-202ENSMUST00000202548 579 ntBASIC19.2■□□□□ 0.66
Cux1P53564 Colec11-203ENSMUST00000220836 887 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Cux1P53564 Gm29676-202ENSMUST00000222409 364 ntTSL 2 BASIC19.2■□□□□ 0.66
Cux1P53564 AC136986.1-201ENSMUST00000222829 380 ntTSL 2 BASIC19.2■□□□□ 0.66
Cux1P53564 Cldn17-201ENSMUST00000069549 1172 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Cux1P53564 Cldn34c1-201ENSMUST00000113343 3301 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cux1P53564 Wasf2-201ENSMUST00000084241 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cux1P53564 Kdm2b-201ENSMUST00000031435 3532 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Cux1P53564 5730409E04Rik-201ENSMUST00000097886 2886 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cux1P53564 Hs3st3a1-201ENSMUST00000058652 3939 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cux1P53564 Ebp-201ENSMUST00000033509 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cux1P53564 Dse-201ENSMUST00000048010 4389 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cux1P53564 4933439K11Rik-203ENSMUST00000169111 1869 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Cux1P53564 Slc18b1-206ENSMUST00000179321 2843 ntTSL 5 BASIC19.2■□□□□ 0.66
Cux1P53564 Nr2c2-202ENSMUST00000113463 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cux1P53564 Srrm1-202ENSMUST00000084846 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 59.6 ms