Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Palm-204ENSMUST00000218631 2725 ntTSL 2 BASIC12.15□□□□□ -0.47
Lire1P11260 Hpcal4-202ENSMUST00000106246 1627 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.47
Lire1P11260 Ddr1-204ENSMUST00000119825 3769 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.47
Lire1P11260 Ctnnbl1-201ENSMUST00000029178 2442 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.47
Lire1P11260 Lnx1-205ENSMUST00000117525 2259 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Lire1P11260 Fchsd1-201ENSMUST00000043437 4270 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lire1P11260 Steap3-202ENSMUST00000112640 2752 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lire1P11260 Knop1-202ENSMUST00000063607 4884 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lire1P11260 Gm37600-201ENSMUST00000193764 3292 ntBASIC12.14□□□□□ -0.47
Lire1P11260 Tmem56-207ENSMUST00000155309 2230 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lire1P11260 Olfr742-203ENSMUST00000217437 2244 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
Lire1P11260 Zfp853-203ENSMUST00000212715 3133 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
Lire1P11260 Phyh-201ENSMUST00000027975 1438 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lire1P11260 Tbc1d1-204ENSMUST00000121370 5419 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lire1P11260 Add1-202ENSMUST00000052836 2337 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
Lire1P11260 Kcnj3-203ENSMUST00000112633 1679 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lire1P11260 Gm42890-202ENSMUST00000167642 2566 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Lire1P11260 Lsm14b-202ENSMUST00000058764 2566 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Lire1P11260 Tcf4-234ENSMUST00000201410 1915 ntTSL 5 BASIC12.14□□□□□ -0.47
Lire1P11260 Tcf4-243ENSMUST00000202057 1941 ntTSL 5 BASIC12.14□□□□□ -0.47
Lire1P11260 Cul9-204ENSMUST00000182485 7848 ntAPPRIS P2 TSL 5 BASIC12.14□□□□□ -0.47
Lire1P11260 Gm12992-201ENSMUST00000124738 4493 ntTSL 5 BASIC12.14□□□□□ -0.47
Lire1P11260 Kcnk2-202ENSMUST00000110920 3572 ntAPPRIS ALT1 TSL 5 BASIC12.14□□□□□ -0.47
Lire1P11260 Fam53b-205ENSMUST00000106166 1270 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Lire1P11260 Gm15371-201ENSMUST00000117057 784 ntBASIC12.14□□□□□ -0.47
Lire1P11260 Gm15821-201ENSMUST00000121995 1210 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lire1P11260 Oprm1-229ENSMUST00000152674 1179 ntTSL 3 BASIC12.14□□□□□ -0.47
Lire1P11260 Snhg9-201ENSMUST00000161706 183 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Lire1P11260 Pbx2-205ENSMUST00000183827 1186 ntTSL 5 BASIC12.14□□□□□ -0.47
Lire1P11260 Fam24a-203ENSMUST00000207784 600 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lire1P11260 Gm36634-201ENSMUST00000218356 1259 ntTSL 3 BASIC12.14□□□□□ -0.47
Lire1P11260 Gm867-202ENSMUST00000219979 714 ntAPPRIS P1 TSL 3 BASIC12.14□□□□□ -0.47
Lire1P11260 Gm10570-201ENSMUST00000097865 513 ntAPPRIS P1 BASIC12.14□□□□□ -0.47
Lire1P11260 Mtmr2-201ENSMUST00000034396 3788 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lire1P11260 Hgs-203ENSMUST00000106205 2898 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
Lire1P11260 Art3-208ENSMUST00000121096 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lire1P11260 Rnf113a2-201ENSMUST00000183146 1383 ntAPPRIS P1 BASIC12.14□□□□□ -0.47
Lire1P11260 Ctgf-201ENSMUST00000020171 2398 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lire1P11260 Rubcn-202ENSMUST00000089684 5311 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lire1P11260 Nr3c1-203ENSMUST00000115567 6436 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lire1P11260 Gm13055-201ENSMUST00000127875 1961 ntTSL 5 BASIC12.14□□□□□ -0.47
Lire1P11260 Gpr17-201ENSMUST00000064016 5195 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lire1P11260 R3hcc1-206ENSMUST00000216152 1467 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lire1P11260 Cntd1-201ENSMUST00000103107 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lire1P11260 Itfg2-201ENSMUST00000001559 2320 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lire1P11260 Aldh1a7-201ENSMUST00000025656 2066 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lire1P11260 App-206ENSMUST00000227723 8167 ntAPPRIS ALT2 BASIC12.14□□□□□ -0.47
Lire1P11260 AC122860.2-201ENSMUST00000217967 2671 ntBASIC12.14□□□□□ -0.47
Lire1P11260 Cnppd1-201ENSMUST00000041213 2429 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lire1P11260 Cic-212ENSMUST00000169266 8221 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lire1P11260 Pfkfb3-212ENSMUST00000170196 2163 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Lire1P11260 Spag8-202ENSMUST00000107870 1342 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lire1P11260 Micu1-202ENSMUST00000092508 2294 ntAPPRIS ALT1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lire1P11260 2900005J15Rik-202ENSMUST00000171190 2025 ntBASIC12.13□□□□□ -0.47
Lire1P11260 Gm5912-201ENSMUST00000122282 1438 ntBASIC12.13□□□□□ -0.47
Lire1P11260 Gm10371-201ENSMUST00000127429 1411 ntTSL 2 BASIC12.13□□□□□ -0.47
Lire1P11260 Pbrm1-206ENSMUST00000112094 5154 ntAPPRIS P5 TSL 5 BASIC12.13□□□□□ -0.47
Lire1P11260 Pcna-201ENSMUST00000028817 1518 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lire1P11260 Tenm3-206ENSMUST00000190840 8663 ntAPPRIS ALT1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lire1P11260 Gm14379-201ENSMUST00000128858 1878 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Lire1P11260 Mocs2-208ENSMUST00000166176 1855 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lire1P11260 Ints5-201ENSMUST00000096249 3294 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lire1P11260 Sgip1-201ENSMUST00000066824 4305 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lire1P11260 Egr1-202ENSMUST00000165033 3036 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
Lire1P11260 Pfkp-201ENSMUST00000021614 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lire1P11260 Slc30a8-201ENSMUST00000037240 1971 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lire1P11260 Gh-201ENSMUST00000103071 862 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lire1P11260 Gm12928-201ENSMUST00000117115 573 ntBASIC12.13□□□□□ -0.47
Lire1P11260 Gm12840-201ENSMUST00000156081 627 ntTSL 5 BASIC12.13□□□□□ -0.47
Lire1P11260 Gm6460-202ENSMUST00000163787 821 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lire1P11260 Gm8879-201ENSMUST00000170260 1125 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
Lire1P11260 4933402N22Rik-202ENSMUST00000170301 1092 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lire1P11260 Gm27847-201ENSMUST00000183711 107 ntBASIC12.13□□□□□ -0.47
Lire1P11260 Gm27375-201ENSMUST00000183799 107 ntBASIC12.13□□□□□ -0.47
Lire1P11260 Gm44780-201ENSMUST00000205409 581 ntTSL 3 BASIC12.13□□□□□ -0.47
Lire1P11260 Gm45505-201ENSMUST00000210252 948 ntTSL 5 BASIC12.13□□□□□ -0.47
Lire1P11260 Apoa5-203ENSMUST00000213878 727 ntTSL 3 BASIC12.13□□□□□ -0.47
Lire1P11260 Gm11427-203ENSMUST00000215482 1203 ntTSL 5 BASIC12.13□□□□□ -0.47
Lire1P11260 Lyzl4-201ENSMUST00000077706 996 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lire1P11260 Gm10478-201ENSMUST00000084451 396 ntBASIC12.13□□□□□ -0.47
Lire1P11260 Mir497b-201ENSMUST00000093601 125 ntBASIC12.13□□□□□ -0.47
Lire1P11260 Camkmt-201ENSMUST00000095188 972 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lire1P11260 Map3k4-201ENSMUST00000089058 5305 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lire1P11260 Ptbp1-216ENSMUST00000172282 3110 ntAPPRIS P4 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lire1P11260 Cog1-201ENSMUST00000018805 3935 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lire1P11260 Gm14752-201ENSMUST00000120719 2075 ntBASIC12.13□□□□□ -0.47
Lire1P11260 BC055324-202ENSMUST00000097493 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lire1P11260 Ppt2-201ENSMUST00000064953 1729 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lire1P11260 Npbwr1-201ENSMUST00000044180 3692 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
Lire1P11260 Tanc2-202ENSMUST00000100330 11855 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
Lire1P11260 Gnb5-202ENSMUST00000213990 1803 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Lire1P11260 Ces2f-201ENSMUST00000076384 1823 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lire1P11260 Ppp1r18-203ENSMUST00000127442 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lire1P11260 Bbs5-201ENSMUST00000074963 1468 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lire1P11260 Rbm47-206ENSMUST00000200775 3180 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lire1P11260 Klf11-201ENSMUST00000020982 4086 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lire1P11260 Krba1-202ENSMUST00000077093 8380 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Lire1P11260 Ak4-202ENSMUST00000106945 4175 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lire1P11260 Triobp-203ENSMUST00000109689 7187 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Lire1P11260 4930432B10Rik-201ENSMUST00000181688 2085 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 39.1 ms