Protein–RNA interactions for Protein: Q9ES34

Ube3b, Ubiquitin-protein ligase E3B, mousemouse

Predictions only

Length 1,070 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube3bQ9ES34 Scyl3-201ENSMUST00000027876 4368 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ube3bQ9ES34 Plekhg6-201ENSMUST00000042647 3299 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ube3bQ9ES34 Gm36445-201ENSMUST00000209344 1432 ntTSL 5 BASIC15.15■□□□□ 0.02
Ube3bQ9ES34 Retreg1-206ENSMUST00000228306 1430 ntBASIC15.15■□□□□ 0.02
Ube3bQ9ES34 Nphp4-202ENSMUST00000081393 5027 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ube3bQ9ES34 Chchd3-201ENSMUST00000066379 1550 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ube3bQ9ES34 Wdr45-223ENSMUST00000207675 1335 ntTSL 5 BASIC15.15■□□□□ 0.02
Ube3bQ9ES34 Tubb2a-ps2-201ENSMUST00000221547 1339 ntBASIC15.15■□□□□ 0.02
Ube3bQ9ES34 Gm9881-201ENSMUST00000068783 3205 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
Ube3bQ9ES34 Tnks1bp1-201ENSMUST00000048400 4799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ube3bQ9ES34 Zbtb49-202ENSMUST00000114113 2645 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Ube3bQ9ES34 Gm2694-202ENSMUST00000180806 1452 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Ube3bQ9ES34 BC025446-201ENSMUST00000055719 1470 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ube3bQ9ES34 Usp33-209ENSMUST00000197748 4183 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ube3bQ9ES34 BC055324-201ENSMUST00000045876 3179 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ube3bQ9ES34 Zfp541-202ENSMUST00000209369 4879 ntAPPRIS P2 TSL 5 BASIC15.14■□□□□ 0.01
Ube3bQ9ES34 Rbl2-208ENSMUST00000209518 4792 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ube3bQ9ES34 Luc7l2-207ENSMUST00000161227 2405 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Ube3bQ9ES34 Aldh9a1-201ENSMUST00000028004 2835 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ube3bQ9ES34 Nox3-201ENSMUST00000115800 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ube3bQ9ES34 Asb10-201ENSMUST00000048302 2327 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ube3bQ9ES34 Capn9-201ENSMUST00000093033 2330 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ube3bQ9ES34 Rtn4rl1-201ENSMUST00000102514 3525 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ube3bQ9ES34 Gm14064-201ENSMUST00000134833 727 ntTSL 3 BASIC15.14■□□□□ 0.01
Ube3bQ9ES34 Rmrp-201ENSMUST00000157463 271 ntBASIC15.14■□□□□ 0.01
Ube3bQ9ES34 Gas5-210ENSMUST00000159706 557 ntTSL 2 BASIC15.14■□□□□ 0.01
Ube3bQ9ES34 Gm17028-201ENSMUST00000170026 704 ntTSL 3 BASIC15.14■□□□□ 0.01
Ube3bQ9ES34 Gm20636-201ENSMUST00000176660 707 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Ube3bQ9ES34 Gm20614-201ENSMUST00000177106 632 ntBASIC15.14■□□□□ 0.01
Ube3bQ9ES34 Gm27023-201ENSMUST00000182372 285 ntBASIC15.14■□□□□ 0.01
Ube3bQ9ES34 Gm28379-201ENSMUST00000186450 554 ntTSL 5 BASIC15.14■□□□□ 0.01
Ube3bQ9ES34 Rpl7a-ps2-201ENSMUST00000200554 774 ntBASIC15.14■□□□□ 0.01
Ube3bQ9ES34 Gm39929-201ENSMUST00000209672 693 ntTSL 3 BASIC15.14■□□□□ 0.01
Ube3bQ9ES34 Gm39404-201ENSMUST00000216350 313 ntBASIC15.14■□□□□ 0.01
Ube3bQ9ES34 Hspb2-202ENSMUST00000217159 552 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Ube3bQ9ES34 AC125209.1-201ENSMUST00000225812 766 ntBASIC15.14■□□□□ 0.01
Ube3bQ9ES34 AL732506.1-201ENSMUST00000226420 281 ntBASIC15.14■□□□□ 0.01
Ube3bQ9ES34 AC113031.8-201ENSMUST00000227856 631 ntBASIC15.14■□□□□ 0.01
Ube3bQ9ES34 Ctrc-201ENSMUST00000037059 951 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Ube3bQ9ES34 Syngr4-201ENSMUST00000039049 967 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ube3bQ9ES34 1700088E04Rik-212ENSMUST00000190959 1403 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Ube3bQ9ES34 Islr2-201ENSMUST00000114144 3880 ntAPPRIS P3 TSL 2 BASIC15.14■□□□□ 0.01
Ube3bQ9ES34 Slc30a3-206ENSMUST00000202740 1989 ntTSL 5 BASIC15.14■□□□□ 0.01
Ube3bQ9ES34 Arhgap11a-203ENSMUST00000110948 4878 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ube3bQ9ES34 Zc3h13-201ENSMUST00000022577 6151 ntAPPRIS P2 TSL 5 BASIC15.14■□□□□ 0.01
Ube3bQ9ES34 H2-Ob-202ENSMUST00000167280 1878 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Ube3bQ9ES34 Farsb-202ENSMUST00000170217 2036 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ube3bQ9ES34 Chd1-202ENSMUST00000024627 7916 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ube3bQ9ES34 Nol9-201ENSMUST00000084116 3722 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ube3bQ9ES34 Mcm8-201ENSMUST00000028831 3179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ube3bQ9ES34 Necap1-201ENSMUST00000032477 2476 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ube3bQ9ES34 Zfp429-201ENSMUST00000109732 2056 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ube3bQ9ES34 Mast1-202ENSMUST00000119820 2078 ntTSL 5 BASIC15.13■□□□□ 0.01
Ube3bQ9ES34 Prrc2a-206ENSMUST00000174805 6741 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Ube3bQ9ES34 Phyhd1-202ENSMUST00000091132 1353 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Ube3bQ9ES34 Pik3cd-204ENSMUST00000105690 4921 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ube3bQ9ES34 Tmed8-201ENSMUST00000037418 7409 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ube3bQ9ES34 Apaf1-207ENSMUST00000161987 2710 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Ube3bQ9ES34 Gm14999-201ENSMUST00000121039 624 ntBASIC15.13■□□□□ 0.01
Ube3bQ9ES34 Lage3-201ENSMUST00000015433 761 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ube3bQ9ES34 Rps19-ps11-201ENSMUST00000160308 433 ntBASIC15.13■□□□□ 0.01
Ube3bQ9ES34 Gm42920-201ENSMUST00000196616 409 ntTSL 3 BASIC15.13■□□□□ 0.01
Ube3bQ9ES34 Spata33-205ENSMUST00000212523 486 ntTSL 3 BASIC15.13■□□□□ 0.01
Ube3bQ9ES34 Gm6015-201ENSMUST00000217493 1586 ntBASIC15.13■□□□□ 0.01
Ube3bQ9ES34 AC134328.1-201ENSMUST00000222693 667 ntTSL 2 BASIC15.13■□□□□ 0.01
Ube3bQ9ES34 Ccs-201ENSMUST00000037246 1057 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ube3bQ9ES34 1700007G11Rik-201ENSMUST00000080333 861 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ube3bQ9ES34 Dlgap1-202ENSMUST00000097288 2626 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Ube3bQ9ES34 Pjvk-201ENSMUST00000099986 1219 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ube3bQ9ES34 Gm26588-202ENSMUST00000181355 2538 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Ube3bQ9ES34 Satb2-201ENSMUST00000042857 6277 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Ube3bQ9ES34 Nfkb2-201ENSMUST00000073116 3054 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ube3bQ9ES34 Creg2-201ENSMUST00000053355 6091 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ube3bQ9ES34 Olfm2-201ENSMUST00000034692 1836 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ube3bQ9ES34 Gm12132-201ENSMUST00000130945 1391 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Ube3bQ9ES34 Alppl2-202ENSMUST00000188310 2016 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ube3bQ9ES34 Lag3-201ENSMUST00000032217 2001 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ube3bQ9ES34 Nlrp6-204ENSMUST00000184560 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ube3bQ9ES34 Sh3glb2-202ENSMUST00000100215 1749 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Ube3bQ9ES34 Mat2b-202ENSMUST00000101347 2053 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Ube3bQ9ES34 Otx2-209ENSMUST00000226501 2592 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
Ube3bQ9ES34 Rgma-201ENSMUST00000094312 3586 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ube3bQ9ES34 Aspm-205ENSMUST00000200083 6072 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Ube3bQ9ES34 Gm24231-201ENSMUST00000104315 133 ntBASIC15.12■□□□□ 0.01
Ube3bQ9ES34 Tnnt3-217ENSMUST00000105957 1028 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Ube3bQ9ES34 Nipsnap3b-202ENSMUST00000107665 848 ntTSL 2 BASIC15.12■□□□□ 0.01
Ube3bQ9ES34 Rhox2c-201ENSMUST00000115190 762 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Ube3bQ9ES34 Gm13570-201ENSMUST00000140763 309 ntBASIC15.12■□□□□ 0.01
Ube3bQ9ES34 Gm11961-202ENSMUST00000141157 760 ntTSL 3 BASIC15.12■□□□□ 0.01
Ube3bQ9ES34 Hnf4aos-203ENSMUST00000141329 839 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Ube3bQ9ES34 Gm17376-201ENSMUST00000166016 84 ntBASIC15.12■□□□□ 0.01
Ube3bQ9ES34 Gm17586-201ENSMUST00000181502 908 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Ube3bQ9ES34 Gm5441-202ENSMUST00000190132 449 ntTSL 2 BASIC15.12■□□□□ 0.01
Ube3bQ9ES34 Gm38979-201ENSMUST00000207099 698 ntTSL 3 BASIC15.12■□□□□ 0.01
Ube3bQ9ES34 Gm35082-202ENSMUST00000208164 525 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Ube3bQ9ES34 Tmem205-203ENSMUST00000213698 705 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
Ube3bQ9ES34 Olfr368-201ENSMUST00000053990 985 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
Ube3bQ9ES34 Gm10076-201ENSMUST00000073238 384 ntBASIC15.12■□□□□ 0.01
Ube3bQ9ES34 Gm42928-201ENSMUST00000197338 3339 ntBASIC15.12■□□□□ 0.01
Ube3bQ9ES34 Hmga1-203ENSMUST00000117600 1635 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 31.9 ms