Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Rubcn-204ENSMUST00000119810 3371 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
Trim54Q9ERP3 Itgb4-202ENSMUST00000068981 5584 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
Trim54Q9ERP3 Nrg1-210ENSMUST00000208488 2403 ntAPPRIS P5 TSL 5 BASIC13.82□□□□□ -0.2
Trim54Q9ERP3 Chpf2-201ENSMUST00000088295 5371 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
Trim54Q9ERP3 4933424N20Rik-201ENSMUST00000200749 1463 ntBASIC13.82□□□□□ -0.2
Trim54Q9ERP3 Il11ra1-203ENSMUST00000108041 1953 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim54Q9ERP3 Gm13305-201ENSMUST00000098121 1953 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim54Q9ERP3 Taf1c-201ENSMUST00000093099 3236 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim54Q9ERP3 Pphln1-204ENSMUST00000165935 3473 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim54Q9ERP3 C77080-203ENSMUST00000106051 5049 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim54Q9ERP3 Poc1b-203ENSMUST00000159228 1799 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Trim54Q9ERP3 Pdgfra-205ENSMUST00000201711 4088 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Trim54Q9ERP3 Clic3-202ENSMUST00000114265 808 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim54Q9ERP3 Dctn6-203ENSMUST00000118811 934 ntTSL 3 BASIC13.82□□□□□ -0.2
Trim54Q9ERP3 Gm12291-201ENSMUST00000121627 311 ntBASIC13.82□□□□□ -0.2
Trim54Q9ERP3 Tex22-201ENSMUST00000012355 1267 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim54Q9ERP3 F630206G17Rik-201ENSMUST00000137002 685 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Trim54Q9ERP3 Gm11961-202ENSMUST00000141157 760 ntTSL 3 BASIC13.82□□□□□ -0.2
Trim54Q9ERP3 H2al1g-201ENSMUST00000179859 509 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
Trim54Q9ERP3 Gm5363-201ENSMUST00000211927 938 ntBASIC13.82□□□□□ -0.2
Trim54Q9ERP3 Pdpk1-204ENSMUST00000115409 4623 ntTSL 5 BASIC13.82□□□□□ -0.2
Trim54Q9ERP3 Nek3-202ENSMUST00000110730 2050 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
Trim54Q9ERP3 Gm16741-201ENSMUST00000145085 1818 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Trim54Q9ERP3 Hsd3b7-201ENSMUST00000046863 1828 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim54Q9ERP3 Cops7a-202ENSMUST00000112439 1328 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Trim54Q9ERP3 Tppp-201ENSMUST00000022057 5090 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim54Q9ERP3 Pnoc-201ENSMUST00000059339 2157 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim54Q9ERP3 Gps1-201ENSMUST00000100134 1925 ntTSL 2 BASIC13.82□□□□□ -0.2
Trim54Q9ERP3 Acadl-201ENSMUST00000027153 1916 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim54Q9ERP3 Fbxw9-201ENSMUST00000095220 1907 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim54Q9ERP3 Jph2-201ENSMUST00000017961 4211 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim54Q9ERP3 A530020G20Rik-202ENSMUST00000181070 3660 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Trim54Q9ERP3 Pfkl-201ENSMUST00000020522 3730 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim54Q9ERP3 Acbd5-208ENSMUST00000226571 3802 ntAPPRIS ALT2 BASIC13.81□□□□□ -0.2
Trim54Q9ERP3 AC113441.2-201ENSMUST00000221538 1468 ntBASIC13.81□□□□□ -0.2
Trim54Q9ERP3 Kcnd3-203ENSMUST00000118360 2668 ntAPPRIS P4 TSL 5 BASIC13.81□□□□□ -0.2
Trim54Q9ERP3 Abi1-201ENSMUST00000078977 3027 ntAPPRIS ALT1 TSL 5 BASIC13.81□□□□□ -0.2
Trim54Q9ERP3 Armcx6-202ENSMUST00000113194 2120 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
Trim54Q9ERP3 Ppox-201ENSMUST00000073120 1821 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim54Q9ERP3 Thnsl2-201ENSMUST00000074241 1821 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
Trim54Q9ERP3 Dhtkd1-202ENSMUST00000095147 5480 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
Trim54Q9ERP3 Dusp26-203ENSMUST00000161713 1524 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim54Q9ERP3 Rgp1-202ENSMUST00000107886 5888 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
Trim54Q9ERP3 Ncor2-204ENSMUST00000111394 7452 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Trim54Q9ERP3 Creb3-201ENSMUST00000102944 1884 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim54Q9ERP3 Mta2-201ENSMUST00000096240 3135 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim54Q9ERP3 Lgals8-203ENSMUST00000124888 2843 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim54Q9ERP3 Gm9025-201ENSMUST00000122415 1575 ntBASIC13.81□□□□□ -0.2
Trim54Q9ERP3 AC113060.1-201ENSMUST00000225689 1573 ntBASIC13.81□□□□□ -0.2
Trim54Q9ERP3 Spsb1-202ENSMUST00000105684 1002 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim54Q9ERP3 Acyp1-204ENSMUST00000121930 634 ntTSL 2 BASIC13.81□□□□□ -0.2
Trim54Q9ERP3 C230066G23Rik-201ENSMUST00000150195 650 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Trim54Q9ERP3 Cox6c-203ENSMUST00000153512 738 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
Trim54Q9ERP3 Cryge-202ENSMUST00000161960 690 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Trim54Q9ERP3 Mir7070-201ENSMUST00000183657 86 ntBASIC13.81□□□□□ -0.2
Trim54Q9ERP3 Gm29054-201ENSMUST00000187589 1185 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Trim54Q9ERP3 Gm44405-201ENSMUST00000198952 126 ntBASIC13.81□□□□□ -0.2
Trim54Q9ERP3 Gm5869-201ENSMUST00000200248 1257 ntBASIC13.81□□□□□ -0.2
Trim54Q9ERP3 AC153506.3-201ENSMUST00000219287 1029 ntTSL 5 BASIC13.81□□□□□ -0.2
Trim54Q9ERP3 Fam96a-201ENSMUST00000034945 1240 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim54Q9ERP3 Rnf7-201ENSMUST00000057500 1232 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim54Q9ERP3 Mir339-201ENSMUST00000083659 96 ntBASIC13.81□□□□□ -0.2
Trim54Q9ERP3 Arhgap11a-203ENSMUST00000110948 4878 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim54Q9ERP3 Cep164-201ENSMUST00000117194 5541 ntAPPRIS P2 TSL 5 BASIC13.81□□□□□ -0.2
Trim54Q9ERP3 AC154262.2-201ENSMUST00000224310 2293 ntBASIC13.81□□□□□ -0.2
Trim54Q9ERP3 BC003331-205ENSMUST00000111913 3273 ntAPPRIS P3 TSL 5 BASIC13.81□□□□□ -0.2
Trim54Q9ERP3 Myt1l-204ENSMUST00000218198 2735 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Trim54Q9ERP3 Gtf2f1-201ENSMUST00000002733 1717 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim54Q9ERP3 Pcyox1-201ENSMUST00000032065 4295 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim54Q9ERP3 Gga3-202ENSMUST00000106508 3582 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim54Q9ERP3 Chst15-201ENSMUST00000077472 5041 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim54Q9ERP3 Rnf114-201ENSMUST00000078050 2502 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim54Q9ERP3 Agrn-201ENSMUST00000071248 4831 ntTSL 5 BASIC13.8□□□□□ -0.2
Trim54Q9ERP3 Gm38346-201ENSMUST00000192379 2639 ntBASIC13.8□□□□□ -0.2
Trim54Q9ERP3 Sass6-206ENSMUST00000198386 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim54Q9ERP3 Wsb2-202ENSMUST00000111959 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim54Q9ERP3 Gm14371-201ENSMUST00000138925 1518 ntBASIC13.8□□□□□ -0.2
Trim54Q9ERP3 Elmo3-202ENSMUST00000212033 2351 ntTSL 5 BASIC13.8□□□□□ -0.2
Trim54Q9ERP3 Jmjd8-201ENSMUST00000026832 2091 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim54Q9ERP3 Adra1b-201ENSMUST00000067258 3331 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim54Q9ERP3 Rnf185-201ENSMUST00000064364 2906 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Trim54Q9ERP3 Mogat1-202ENSMUST00000113524 1228 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Trim54Q9ERP3 C330007P06Rik-203ENSMUST00000115249 1145 ntTSL 5 BASIC13.8□□□□□ -0.2
Trim54Q9ERP3 Gm15479-201ENSMUST00000139309 1133 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Trim54Q9ERP3 Gm15979-201ENSMUST00000149741 590 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Trim54Q9ERP3 Rps13-201ENSMUST00000170953 589 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim54Q9ERP3 Iqcf6-201ENSMUST00000171091 537 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Trim54Q9ERP3 1700034G24Rik-202ENSMUST00000183186 1081 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Trim54Q9ERP3 Gm6652-201ENSMUST00000186414 1070 ntBASIC13.8□□□□□ -0.2
Trim54Q9ERP3 Gm9678-201ENSMUST00000198979 1149 ntBASIC13.8□□□□□ -0.2
Trim54Q9ERP3 Gm45186-201ENSMUST00000206874 478 ntBASIC13.8□□□□□ -0.2
Trim54Q9ERP3 4933424G06Rik-204ENSMUST00000208994 1120 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim54Q9ERP3 Riiad1-201ENSMUST00000029785 630 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim54Q9ERP3 Odf4-201ENSMUST00000038932 1078 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim54Q9ERP3 Mtus2-202ENSMUST00000085554 1009 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Trim54Q9ERP3 Pla2g4c-204ENSMUST00000167232 2154 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
Trim54Q9ERP3 Acsf3-203ENSMUST00000212790 2171 ntAPPRIS P2 TSL 5 BASIC13.8□□□□□ -0.2
Trim54Q9ERP3 Adh6a-202ENSMUST00000106247 1341 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim54Q9ERP3 Ctbp1-212ENSMUST00000202962 3595 ntTSL 2 BASIC13.8□□□□□ -0.2
Trim54Q9ERP3 C2cd4c-201ENSMUST00000059699 6729 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 66.8 ms