Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Pold3-201ENSMUST00000032969 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Scn4aQ9ER60 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Scn4aQ9ER60 Zfp429-202ENSMUST00000181071 2117 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Scn4aQ9ER60 Begain-204ENSMUST00000209829 3272 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
Scn4aQ9ER60 Ephb1-201ENSMUST00000035129 4667 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Scn4aQ9ER60 Dyrk3-201ENSMUST00000016670 3164 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Scn4aQ9ER60 Gm9625-201ENSMUST00000180422 955 ntBASIC16.9■□□□□ 0.3
Scn4aQ9ER60 Gm35025-203ENSMUST00000193519 634 ntTSL 3 BASIC16.9■□□□□ 0.3
Scn4aQ9ER60 Pmvk-204ENSMUST00000198440 978 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Scn4aQ9ER60 Gm18123-201ENSMUST00000210874 822 ntBASIC16.9■□□□□ 0.3
Scn4aQ9ER60 Ccdc114-205ENSMUST00000211367 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Scn4aQ9ER60 AC154826.1-201ENSMUST00000217369 498 ntTSL 5 BASIC16.9■□□□□ 0.3
Scn4aQ9ER60 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Scn4aQ9ER60 Cd33-201ENSMUST00000004728 1962 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Scn4aQ9ER60 Islr2-202ENSMUST00000163200 4123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Scn4aQ9ER60 Chit1-203ENSMUST00000160060 1580 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Scn4aQ9ER60 Ugcg-201ENSMUST00000030074 4012 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Scn4aQ9ER60 Lhcgr-201ENSMUST00000024916 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Scn4aQ9ER60 Riox2-202ENSMUST00000120667 2200 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Scn4aQ9ER60 Ash2l-210ENSMUST00000166078 2234 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
Scn4aQ9ER60 Maged2-201ENSMUST00000026302 2207 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
Scn4aQ9ER60 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Scn4aQ9ER60 Proser3-202ENSMUST00000108165 2466 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Scn4aQ9ER60 Edn3-201ENSMUST00000029030 3117 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Scn4aQ9ER60 Exosc1-202ENSMUST00000112123 1499 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Scn4aQ9ER60 Rnf44-201ENSMUST00000037422 3734 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Scn4aQ9ER60 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC16.9■□□□□ 0.3
Scn4aQ9ER60 AC107763.1-201ENSMUST00000226082 1365 ntBASIC16.9■□□□□ 0.3
Scn4aQ9ER60 Csnk1d-201ENSMUST00000018274 3675 ntAPPRIS P4 TSL 1 (best) BASIC16.89■□□□□ 0.3
Scn4aQ9ER60 Klhl12-203ENSMUST00000116528 3277 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
Scn4aQ9ER60 Polr2i-203ENSMUST00000108193 488 ntTSL 3 BASIC16.89■□□□□ 0.29
Scn4aQ9ER60 Wfdc3-202ENSMUST00000109328 726 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Scn4aQ9ER60 Gm11789-203ENSMUST00000140645 737 ntTSL 2 BASIC16.89■□□□□ 0.29
Scn4aQ9ER60 1110059E24Rik-208ENSMUST00000179768 962 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
Scn4aQ9ER60 BC025446-202ENSMUST00000185307 758 ntAPPRIS P5 TSL 2 BASIC16.89■□□□□ 0.29
Scn4aQ9ER60 Gm43852-201ENSMUST00000202098 917 ntBASIC16.89■□□□□ 0.29
Scn4aQ9ER60 Mustn1-201ENSMUST00000040715 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Scn4aQ9ER60 Gm43677-201ENSMUST00000198098 2378 ntBASIC16.89■□□□□ 0.29
Scn4aQ9ER60 AC126257.1-201ENSMUST00000213195 1536 ntBASIC16.89■□□□□ 0.29
Scn4aQ9ER60 Litaf-201ENSMUST00000023143 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Scn4aQ9ER60 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Scn4aQ9ER60 Rpn1-201ENSMUST00000032143 3633 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Scn4aQ9ER60 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Scn4aQ9ER60 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC16.89■□□□□ 0.29
Scn4aQ9ER60 Gm26578-201ENSMUST00000181702 4611 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Scn4aQ9ER60 Tuba1a-201ENSMUST00000097014 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Scn4aQ9ER60 Tmem138-201ENSMUST00000025568 1590 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Scn4aQ9ER60 Ahcyl2-205ENSMUST00000125911 2039 ntTSL 5 BASIC16.89■□□□□ 0.29
Scn4aQ9ER60 Sypl-201ENSMUST00000020885 2019 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Scn4aQ9ER60 Psmd2-201ENSMUST00000007212 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Scn4aQ9ER60 Gm23612-201ENSMUST00000103823 110 ntBASIC16.89■□□□□ 0.29
Scn4aQ9ER60 Oprl1-204ENSMUST00000108767 1248 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
Scn4aQ9ER60 Ins2-208ENSMUST00000162317 297 ntTSL 5 BASIC16.89■□□□□ 0.29
Scn4aQ9ER60 1110059E24Rik-205ENSMUST00000178523 629 ntTSL 3 BASIC16.89■□□□□ 0.29
Scn4aQ9ER60 Gm10100-201ENSMUST00000179726 363 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
Scn4aQ9ER60 Gm23576-201ENSMUST00000179918 110 ntBASIC16.89■□□□□ 0.29
Scn4aQ9ER60 Gm9081-201ENSMUST00000182346 991 ntBASIC16.89■□□□□ 0.29
Scn4aQ9ER60 Marc1-203ENSMUST00000189492 1239 ntTSL 5 BASIC16.89■□□□□ 0.29
Scn4aQ9ER60 C230057A21Rik-202ENSMUST00000195781 600 ntTSL 3 BASIC16.89■□□□□ 0.29
Scn4aQ9ER60 Gm6423-201ENSMUST00000204315 934 ntBASIC16.89■□□□□ 0.29
Scn4aQ9ER60 Gm44511-201ENSMUST00000204394 678 ntAPPRIS P5 TSL 1 (best) BASIC16.89■□□□□ 0.29
Scn4aQ9ER60 Gm44511-202ENSMUST00000204423 678 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Scn4aQ9ER60 AC122860.1-201ENSMUST00000217669 773 ntTSL 3 BASIC16.89■□□□□ 0.29
Scn4aQ9ER60 Tex35-201ENSMUST00000027884 909 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Scn4aQ9ER60 Cdk19os-201ENSMUST00000044774 534 ntTSL 5 BASIC16.89■□□□□ 0.29
Scn4aQ9ER60 Gm6509-201ENSMUST00000098286 1218 ntTSL 5 BASIC16.89■□□□□ 0.29
Scn4aQ9ER60 Zdhhc20-205ENSMUST00000226057 2179 ntAPPRIS ALT2 BASIC16.89■□□□□ 0.29
Scn4aQ9ER60 9130024F11Rik-202ENSMUST00000185204 2628 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Scn4aQ9ER60 Pak4-201ENSMUST00000032823 2611 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Scn4aQ9ER60 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Scn4aQ9ER60 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Scn4aQ9ER60 Retreg1-206ENSMUST00000228306 1430 ntBASIC16.88■□□□□ 0.29
Scn4aQ9ER60 Ccna1-204ENSMUST00000198320 1564 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Scn4aQ9ER60 Capn3-201ENSMUST00000028748 2606 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Scn4aQ9ER60 Fndc7-201ENSMUST00000053065 3009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Scn4aQ9ER60 AC159649.2-201ENSMUST00000222984 3223 ntBASIC16.88■□□□□ 0.29
Scn4aQ9ER60 Poli-201ENSMUST00000043286 2591 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Scn4aQ9ER60 Dnajb5-204ENSMUST00000107973 2300 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Scn4aQ9ER60 Sec14l1-201ENSMUST00000021177 2866 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
Scn4aQ9ER60 4930558J22Rik-201ENSMUST00000139822 1480 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Scn4aQ9ER60 Unc119-202ENSMUST00000100755 933 ntTSL 2 BASIC16.88■□□□□ 0.29
Scn4aQ9ER60 1700017I07Rik-201ENSMUST00000184823 462 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Scn4aQ9ER60 Gm7192-201ENSMUST00000210793 1137 ntBASIC16.88■□□□□ 0.29
Scn4aQ9ER60 BC049987-201ENSMUST00000213859 918 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Scn4aQ9ER60 Rhno1-207ENSMUST00000223237 1081 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
Scn4aQ9ER60 Prss51-204ENSMUST00000224112 1042 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
Scn4aQ9ER60 Try5-201ENSMUST00000064324 801 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Scn4aQ9ER60 Prok2-201ENSMUST00000008273 594 ntTSL 3 BASIC16.88■□□□□ 0.29
Scn4aQ9ER60 Srd5a1-202ENSMUST00000091514 2644 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Scn4aQ9ER60 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Scn4aQ9ER60 Hbs1l-201ENSMUST00000020153 2793 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Scn4aQ9ER60 Adck1-202ENSMUST00000166940 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Scn4aQ9ER60 Rftn1-201ENSMUST00000044503 4029 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Scn4aQ9ER60 Cdk10-212ENSMUST00000213005 1580 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Scn4aQ9ER60 Mbtd1-202ENSMUST00000063718 3785 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Scn4aQ9ER60 Slc10a3-204ENSMUST00000114147 1708 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
Scn4aQ9ER60 Bcl2l1-201ENSMUST00000007803 2417 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Scn4aQ9ER60 Gm21358-201ENSMUST00000191645 1659 ntBASIC16.87■□□□□ 0.29
Scn4aQ9ER60 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Scn4aQ9ER60 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 66.1 ms