Protein–RNA interactions for Protein: Q8VEE4

Rpa1, Replication protein A 70 kDa DNA-binding subunit, mousemouse

Known RBP Predictions only

Length 623 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpa1Q8VEE4 Camta2-205ENSMUST00000119120 4460 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Rpa1Q8VEE4 Bcas3-202ENSMUST00000092821 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Rpa1Q8VEE4 Ctbp2-209ENSMUST00000166439 1997 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Rpa1Q8VEE4 Nxf1-211ENSMUST00000184970 5591 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Rpa1Q8VEE4 Epb41l5-201ENSMUST00000027632 2523 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Rpa1Q8VEE4 Slc35g3-201ENSMUST00000102586 1618 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Rpa1Q8VEE4 Lrrc8c-201ENSMUST00000067924 6976 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Rpa1Q8VEE4 Cidec-201ENSMUST00000032416 1703 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Rpa1Q8VEE4 Fcrls-201ENSMUST00000090986 2273 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Rpa1Q8VEE4 Ninj2-202ENSMUST00000112711 853 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
Rpa1Q8VEE4 Gm12485-201ENSMUST00000119641 291 ntBASIC12.89□□□□□ -0.35
Rpa1Q8VEE4 G530012D18Rik-201ENSMUST00000178024 420 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
Rpa1Q8VEE4 Gm26839-201ENSMUST00000180686 842 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Rpa1Q8VEE4 Gm28277-201ENSMUST00000187450 885 ntTSL 3 BASIC12.89□□□□□ -0.35
Rpa1Q8VEE4 Gm29608-201ENSMUST00000190444 463 ntBASIC12.89□□□□□ -0.35
Rpa1Q8VEE4 Gm19331-201ENSMUST00000193799 1092 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Rpa1Q8VEE4 Gm44344-201ENSMUST00000200287 129 ntBASIC12.89□□□□□ -0.35
Rpa1Q8VEE4 Gm44044-201ENSMUST00000205178 1089 ntBASIC12.89□□□□□ -0.35
Rpa1Q8VEE4 Gm42196-201ENSMUST00000209618 730 ntTSL 5 BASIC12.89□□□□□ -0.35
Rpa1Q8VEE4 Dkkl1-204ENSMUST00000210741 662 ntAPPRIS ALT2 TSL 2 BASIC12.89□□□□□ -0.35
Rpa1Q8VEE4 Gm26953-206ENSMUST00000212840 619 ntTSL 5 BASIC12.89□□□□□ -0.35
Rpa1Q8VEE4 Gm18515-201ENSMUST00000219755 797 ntBASIC12.89□□□□□ -0.35
Rpa1Q8VEE4 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Rpa1Q8VEE4 Cyhr1-201ENSMUST00000066677 1163 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Rpa1Q8VEE4 Myl3-201ENSMUST00000079784 937 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Rpa1Q8VEE4 Clcnkb-201ENSMUST00000006378 2370 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Rpa1Q8VEE4 Utp23-203ENSMUST00000137116 2921 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Rpa1Q8VEE4 Insrr-202ENSMUST00000107582 4694 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
Rpa1Q8VEE4 Mcm9-204ENSMUST00000219838 4132 ntTSL 5 BASIC12.89□□□□□ -0.35
Rpa1Q8VEE4 Tm9sf2-201ENSMUST00000026624 3107 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Rpa1Q8VEE4 Zfp541-202ENSMUST00000209369 4879 ntAPPRIS P2 TSL 5 BASIC12.89□□□□□ -0.35
Rpa1Q8VEE4 Gm44094-201ENSMUST00000204703 2030 ntBASIC12.89□□□□□ -0.35
Rpa1Q8VEE4 Ascc1-201ENSMUST00000050516 1450 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Rpa1Q8VEE4 B3gntl1-201ENSMUST00000062654 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Rpa1Q8VEE4 Nsmce2-202ENSMUST00000168722 2679 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Rpa1Q8VEE4 Psd2-201ENSMUST00000115716 4607 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
Rpa1Q8VEE4 Nde1-203ENSMUST00000117958 1551 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Rpa1Q8VEE4 Dnajb1-202ENSMUST00000212300 2854 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Rpa1Q8VEE4 Plekhd1-201ENSMUST00000140770 3535 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Rpa1Q8VEE4 Rtbdn-204ENSMUST00000152378 2322 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Rpa1Q8VEE4 Gm14149-201ENSMUST00000123048 1853 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Rpa1Q8VEE4 Usp3-205ENSMUST00000127569 5607 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Rpa1Q8VEE4 Myo15b-208ENSMUST00000222123 5154 ntTSL 5 BASIC12.89□□□□□ -0.35
Rpa1Q8VEE4 Usp2-201ENSMUST00000034508 3867 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Rpa1Q8VEE4 Agxt2-204ENSMUST00000110542 2198 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Rpa1Q8VEE4 Zfp82-201ENSMUST00000080834 2181 ntAPPRIS P3 TSL 5 BASIC12.88□□□□□ -0.35
Rpa1Q8VEE4 Gm29500-201ENSMUST00000185992 1344 ntTSL 5 BASIC12.88□□□□□ -0.35
Rpa1Q8VEE4 Thap6-204ENSMUST00000193925 1337 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Rpa1Q8VEE4 Atat1-203ENSMUST00000077494 1340 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Rpa1Q8VEE4 Tk1-201ENSMUST00000026661 1440 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Rpa1Q8VEE4 Mageh1-201ENSMUST00000051484 1410 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
Rpa1Q8VEE4 Qrich1-201ENSMUST00000006851 3331 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Rpa1Q8VEE4 1200007C13Rik-201ENSMUST00000143649 2455 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Rpa1Q8VEE4 Ino80c-204ENSMUST00000153360 2498 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Rpa1Q8VEE4 Zscan29-201ENSMUST00000079024 2465 ntTSL 5 BASIC12.88□□□□□ -0.35
Rpa1Q8VEE4 Fmo1-202ENSMUST00000111518 1506 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Rpa1Q8VEE4 Ccdc163-201ENSMUST00000030452 1524 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
Rpa1Q8VEE4 Myocd-201ENSMUST00000101042 2585 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Rpa1Q8VEE4 Gm7324-201ENSMUST00000094051 1647 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
Rpa1Q8VEE4 Mgmt-201ENSMUST00000081510 2894 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Rpa1Q8VEE4 Epm2aip1-201ENSMUST00000060711 7149 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
Rpa1Q8VEE4 Car10-201ENSMUST00000042943 3293 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Rpa1Q8VEE4 Hnrnph2-205ENSMUST00000113203 2315 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
Rpa1Q8VEE4 B4galt1-201ENSMUST00000030121 3983 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Rpa1Q8VEE4 Grm7-202ENSMUST00000172951 4197 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
Rpa1Q8VEE4 Adcy9-201ENSMUST00000005719 4457 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
Rpa1Q8VEE4 AC164441.2-201ENSMUST00000220818 2746 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Rpa1Q8VEE4 Kcnh6-202ENSMUST00000106903 2816 ntTSL 5 BASIC12.88□□□□□ -0.35
Rpa1Q8VEE4 Cdh22-201ENSMUST00000065438 3702 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Rpa1Q8VEE4 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Rpa1Q8VEE4 Myl4-203ENSMUST00000106957 943 ntAPPRIS P1 TSL 3 BASIC12.88□□□□□ -0.35
Rpa1Q8VEE4 Cmss1-201ENSMUST00000114371 930 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Rpa1Q8VEE4 Cebpzos-202ENSMUST00000180077 602 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Rpa1Q8VEE4 A330069E16Rik-201ENSMUST00000181191 887 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Rpa1Q8VEE4 Gm7390-201ENSMUST00000212452 1216 ntBASIC12.88□□□□□ -0.35
Rpa1Q8VEE4 Gm18363-201ENSMUST00000221671 730 ntBASIC12.88□□□□□ -0.35
Rpa1Q8VEE4 Rbfox2-208ENSMUST00000227930 1218 ntBASIC12.88□□□□□ -0.35
Rpa1Q8VEE4 Pdlim7-203ENSMUST00000069968 1006 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Rpa1Q8VEE4 Camk2d-216ENSMUST00000163226 4204 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Rpa1Q8VEE4 Lat2-205ENSMUST00000200998 1481 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Rpa1Q8VEE4 Traf3ip2-201ENSMUST00000019987 2867 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Rpa1Q8VEE4 Limd2-201ENSMUST00000045923 2950 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Rpa1Q8VEE4 Arhgef3-204ENSMUST00000225949 3198 ntBASIC12.88□□□□□ -0.35
Rpa1Q8VEE4 Pnpla6-202ENSMUST00000111070 4496 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
Rpa1Q8VEE4 Syne3-203ENSMUST00000109927 5263 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
Rpa1Q8VEE4 Asap3-201ENSMUST00000047526 4225 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Rpa1Q8VEE4 Pnma3-201ENSMUST00000060418 3405 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
Rpa1Q8VEE4 Ttc17-202ENSMUST00000094801 3408 ntTSL 5 BASIC12.88□□□□□ -0.35
Rpa1Q8VEE4 Fbxl5-211ENSMUST00000196483 2814 ntAPPRIS ALT1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Rpa1Q8VEE4 Aebp2-206ENSMUST00000161335 2524 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Rpa1Q8VEE4 Mip-201ENSMUST00000026455 2144 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Rpa1Q8VEE4 Runx1-201ENSMUST00000023673 5861 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Rpa1Q8VEE4 Myo18a-210ENSMUST00000130305 5450 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
Rpa1Q8VEE4 Chrna9-201ENSMUST00000031108 1843 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Rpa1Q8VEE4 Catsper4-201ENSMUST00000055892 1725 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Rpa1Q8VEE4 Gm13883-201ENSMUST00000150450 1404 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Rpa1Q8VEE4 Cabp4-201ENSMUST00000025761 1431 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Rpa1Q8VEE4 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC12.88□□□□□ -0.35
Rpa1Q8VEE4 Plxnb2-201ENSMUST00000060808 6394 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
Rpa1Q8VEE4 Zfp819-203ENSMUST00000120935 2156 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 29.4 ms