Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Pdp1-205ENSMUST00000108301 2635 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Cux1P53564 Pcbp3-203ENSMUST00000105411 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Cux1P53564 Abr-203ENSMUST00000094012 5236 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Cux1P53564 Ldha-ps2-201ENSMUST00000118722 1057 ntBASIC19.27■□□□□ 0.68
Cux1P53564 Rps2-ps4-201ENSMUST00000121977 633 ntBASIC19.27■□□□□ 0.68
Cux1P53564 Gm13010-201ENSMUST00000140495 828 ntTSL 5 BASIC19.27■□□□□ 0.68
Cux1P53564 Gm23085-201ENSMUST00000157849 293 ntBASIC19.27■□□□□ 0.68
Cux1P53564 C730034F03Rik-201ENSMUST00000168646 1280 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
Cux1P53564 Gm17231-203ENSMUST00000170133 637 ntTSL 3 BASIC19.27■□□□□ 0.68
Cux1P53564 Gm4131-201ENSMUST00000186010 1264 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
Cux1P53564 Gm28516-201ENSMUST00000190257 663 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Cux1P53564 AC132901.1-201ENSMUST00000224345 508 ntBASIC19.27■□□□□ 0.68
Cux1P53564 AC151275.1-201ENSMUST00000224870 585 ntBASIC19.27■□□□□ 0.68
Cux1P53564 Bcr-201ENSMUST00000164107 6839 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Cux1P53564 Rdx-201ENSMUST00000000590 4380 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Cux1P53564 Uba6-202ENSMUST00000113373 3504 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
Cux1P53564 Ubap2l-204ENSMUST00000195995 3516 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Cux1P53564 Wbp11-201ENSMUST00000116514 2739 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Cux1P53564 Ifnar2-201ENSMUST00000023693 3047 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
Cux1P53564 Sirpa-202ENSMUST00000099113 3342 ntTSL 3 BASIC19.26■□□□□ 0.67
Cux1P53564 Vangl2-202ENSMUST00000111263 6528 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Cux1P53564 Slc7a3-201ENSMUST00000073927 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Cux1P53564 Gm14724-201ENSMUST00000118400 537 ntBASIC19.26■□□□□ 0.67
Cux1P53564 Gm15573-201ENSMUST00000119487 540 ntBASIC19.26■□□□□ 0.67
Cux1P53564 Timm22-202ENSMUST00000120699 746 ntTSL 3 BASIC19.26■□□□□ 0.67
Cux1P53564 Gm13944-201ENSMUST00000126572 721 ntTSL 2 BASIC19.26■□□□□ 0.67
Cux1P53564 Gm15881-201ENSMUST00000148792 942 ntBASIC19.26■□□□□ 0.67
Cux1P53564 Pex3-201ENSMUST00000019945 2129 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Cux1P53564 Gm4157-201ENSMUST00000211647 679 ntBASIC19.26■□□□□ 0.67
Cux1P53564 Yap1-202ENSMUST00000086580 4115 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Cux1P53564 Zfp467-205ENSMUST00000114560 3266 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Cux1P53564 Elp4-202ENSMUST00000122965 3048 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Cux1P53564 Dnaja2-201ENSMUST00000034138 2919 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Cux1P53564 Susd3-201ENSMUST00000021816 1317 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Cux1P53564 Fgd1-201ENSMUST00000026296 4001 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Cux1P53564 Celf1-201ENSMUST00000005643 4830 ntAPPRIS P4 TSL 5 BASIC19.26■□□□□ 0.67
Cux1P53564 Gpt2-201ENSMUST00000034136 3639 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Cux1P53564 Gpc2-205ENSMUST00000161827 2586 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Cux1P53564 Neto1-201ENSMUST00000058829 3531 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Cux1P53564 Gcnt4-201ENSMUST00000171324 5087 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Cux1P53564 Calcr-204ENSMUST00000170266 2175 ntAPPRIS P4 TSL 1 (best) BASIC19.26■□□□□ 0.67
Cux1P53564 Gm5847-201ENSMUST00000178959 1595 ntBASIC19.26■□□□□ 0.67
Cux1P53564 Prkaca-ps1-201ENSMUST00000120823 919 ntBASIC19.25■□□□□ 0.67
Cux1P53564 Gm14460-201ENSMUST00000121511 639 ntBASIC19.25■□□□□ 0.67
Cux1P53564 Adap2os-201ENSMUST00000140556 984 ntTSL 5 BASIC19.25■□□□□ 0.67
Cux1P53564 Ctdspl-202ENSMUST00000172464 798 ntAPPRIS ALT1 TSL 5 BASIC19.25■□□□□ 0.67
Cux1P53564 Gm38139-201ENSMUST00000195806 704 ntTSL 2 BASIC19.25■□□□□ 0.67
Cux1P53564 Gm9463-201ENSMUST00000206707 601 ntBASIC19.25■□□□□ 0.67
Cux1P53564 Olfr462-201ENSMUST00000049743 936 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Cux1P53564 Spaca4-201ENSMUST00000094424 707 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Cux1P53564 Mapk8ip3-207ENSMUST00000121723 5410 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cux1P53564 C2cd2-201ENSMUST00000170757 6555 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cux1P53564 Slc2a4-203ENSMUST00000141837 1776 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Cux1P53564 Gm12968-201ENSMUST00000138291 1454 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Cux1P53564 Gm13387-202ENSMUST00000131147 2646 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Cux1P53564 Atp6v1h-201ENSMUST00000044369 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cux1P53564 AC238940.1-201ENSMUST00000225106 1858 ntBASIC19.25■□□□□ 0.67
Cux1P53564 Gjc1-202ENSMUST00000092567 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cux1P53564 Smad4-202ENSMUST00000114939 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cux1P53564 Rnf113a2-201ENSMUST00000183146 1383 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Cux1P53564 Cldn15-202ENSMUST00000111093 1902 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Cux1P53564 Tor1aip2-205ENSMUST00000111757 6118 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cux1P53564 Hsd3b4-201ENSMUST00000179429 1575 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
Cux1P53564 Gm10681-203ENSMUST00000186215 1575 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
Cux1P53564 Gm42863-201ENSMUST00000197875 2958 ntBASIC19.25■□□□□ 0.67
Cux1P53564 Slc8a3-201ENSMUST00000064594 4379 ntAPPRIS ALT1 TSL 5 BASIC19.25■□□□□ 0.67
Cux1P53564 Art3-202ENSMUST00000117108 1408 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Cux1P53564 Art3-203ENSMUST00000118106 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cux1P53564 Eif5a-206ENSMUST00000108609 849 ntAPPRIS P1 TSL 3 BASIC19.25■□□□□ 0.67
Cux1P53564 C230038L03Rik-202ENSMUST00000136294 1197 ntTSL 2 BASIC19.25■□□□□ 0.67
Cux1P53564 Aamdc-213ENSMUST00000154853 883 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Cux1P53564 Glmp-208ENSMUST00000176519 447 ntTSL 5 BASIC19.25■□□□□ 0.67
Cux1P53564 1700029J03Rik-201ENSMUST00000185803 789 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Cux1P53564 AC153830.1-201ENSMUST00000218522 594 ntTSL 5 BASIC19.25■□□□□ 0.67
Cux1P53564 CT010465.1-201ENSMUST00000222463 809 ntTSL 5 BASIC19.25■□□□□ 0.67
Cux1P53564 Ltbp4-204ENSMUST00000118961 3444 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Cux1P53564 Jph3-201ENSMUST00000026357 3637 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Cux1P53564 Wiz-201ENSMUST00000064694 2871 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
Cux1P53564 Tcirg1-211ENSMUST00000145791 2729 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Cux1P53564 Plk-ps1-201ENSMUST00000119494 1787 ntBASIC19.24■□□□□ 0.67
Cux1P53564 Chd1-205ENSMUST00000173311 4211 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Cux1P53564 1300017J02Rik-202ENSMUST00000123530 1874 ntTSL 5 BASIC19.24■□□□□ 0.67
Cux1P53564 Adad1-203ENSMUST00000144629 3101 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Cux1P53564 Ssc4d-202ENSMUST00000111150 459 ntTSL 2 BASIC19.24■□□□□ 0.67
Cux1P53564 Gm13809-201ENSMUST00000117921 597 ntBASIC19.24■□□□□ 0.67
Cux1P53564 Rpsa-ps4-201ENSMUST00000121691 888 ntBASIC19.24■□□□□ 0.67
Cux1P53564 Gm16195-201ENSMUST00000130607 442 ntTSL 2 BASIC19.24■□□□□ 0.67
Cux1P53564 Gm11683-201ENSMUST00000147006 918 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Cux1P53564 Gm16046-203ENSMUST00000150889 1001 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Cux1P53564 H1foo-203ENSMUST00000161969 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Cux1P53564 Retn-202ENSMUST00000169234 1139 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
Cux1P53564 Ighv4-2-201ENSMUST00000192975 362 ntBASIC19.24■□□□□ 0.67
Cux1P53564 4933408A14Rik-201ENSMUST00000199037 729 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Cux1P53564 C330004P14Rik-201ENSMUST00000218833 628 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Cux1P53564 Mia-201ENSMUST00000071986 566 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Cux1P53564 Vmp1-201ENSMUST00000018315 2787 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Cux1P53564 Tjap1-202ENSMUST00000164342 2559 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Cux1P53564 Cpxm2-201ENSMUST00000033149 3498 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Cux1P53564 Zfp64-203ENSMUST00000109162 2848 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
Cux1P53564 Gm9361-201ENSMUST00000198695 1507 ntBASIC19.24■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 59.3 ms