Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Slc39a3-205ENSMUST00000168076 3461 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Hmgb3O54879 Triml2-203ENSMUST00000209872 1395 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Hmgb3O54879 3110062M04Rik-203ENSMUST00000115007 3326 ntAPPRIS P3 TSL 1 (best) BASIC10.53□□□□□ -0.72
Hmgb3O54879 Fuk-201ENSMUST00000041382 3838 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Hmgb3O54879 Slc38a6-206ENSMUST00000140523 3032 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Hmgb3O54879 Gpat4-201ENSMUST00000167004 5518 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Hmgb3O54879 Pdlim2-210ENSMUST00000153735 1578 ntAPPRIS P1 TSL 5 BASIC10.53□□□□□ -0.72
Hmgb3O54879 Kcnab2-203ENSMUST00000159186 1552 ntTSL 5 BASIC10.53□□□□□ -0.72
Hmgb3O54879 Cpa1-201ENSMUST00000031806 1583 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Hmgb3O54879 Usp53-202ENSMUST00000197314 3586 ntTSL 5 BASIC10.53□□□□□ -0.72
Hmgb3O54879 Nav2-204ENSMUST00000183659 7765 ntAPPRIS ALT2 TSL 5 BASIC10.53□□□□□ -0.72
Hmgb3O54879 Abat-201ENSMUST00000065987 4636 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Hmgb3O54879 Fam78a-201ENSMUST00000056406 4107 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Hmgb3O54879 Mixl1-201ENSMUST00000027778 2294 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Hmgb3O54879 Armc7-201ENSMUST00000035240 2260 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Hmgb3O54879 Pax6-203ENSMUST00000111082 3116 ntAPPRIS ALT1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Hmgb3O54879 Rpl17-ps10-201ENSMUST00000119383 555 ntBASIC10.53□□□□□ -0.72
Hmgb3O54879 Rpl17-ps9-201ENSMUST00000119541 555 ntBASIC10.53□□□□□ -0.72
Hmgb3O54879 Rpl17-ps4-201ENSMUST00000120241 555 ntBASIC10.53□□□□□ -0.72
Hmgb3O54879 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Hmgb3O54879 Prss41-202ENSMUST00000122936 1088 ntAPPRIS ALT2 TSL 1 (best) BASIC10.53□□□□□ -0.72
Hmgb3O54879 Mansc4-202ENSMUST00000123367 542 ntAPPRIS ALT2 TSL 2 BASIC10.53□□□□□ -0.72
Hmgb3O54879 E130201H02Rik-201ENSMUST00000123576 851 ntBASIC10.53□□□□□ -0.72
Hmgb3O54879 Gm11788-201ENSMUST00000142520 562 ntTSL 3 BASIC10.53□□□□□ -0.72
Hmgb3O54879 Cenpa-206ENSMUST00000149759 346 ntTSL 3 BASIC10.53□□□□□ -0.72
Hmgb3O54879 Gm15747-202ENSMUST00000151096 524 ntTSL 3 BASIC10.53□□□□□ -0.72
Hmgb3O54879 Cend1-204ENSMUST00000164387 1206 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Hmgb3O54879 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Hmgb3O54879 Gm25927-201ENSMUST00000175058 117 ntBASIC10.53□□□□□ -0.72
Hmgb3O54879 Mir6990-201ENSMUST00000183724 91 ntBASIC10.53□□□□□ -0.72
Hmgb3O54879 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC10.53□□□□□ -0.72
Hmgb3O54879 Gm46209-201ENSMUST00000217912 553 ntBASIC10.53□□□□□ -0.72
Hmgb3O54879 Gm9229-201ENSMUST00000222777 126 ntBASIC10.53□□□□□ -0.72
Hmgb3O54879 AC124549.3-201ENSMUST00000225541 367 ntBASIC10.53□□□□□ -0.72
Hmgb3O54879 Prss41-201ENSMUST00000024926 1128 ntAPPRIS P2 TSL 1 (best) BASIC10.53□□□□□ -0.72
Hmgb3O54879 Fuom-201ENSMUST00000026539 685 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Hmgb3O54879 Taldo1-201ENSMUST00000026576 1229 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Hmgb3O54879 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Hmgb3O54879 Rora-201ENSMUST00000034766 10878 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Hmgb3O54879 Amotl2-211ENSMUST00000153965 4222 ntAPPRIS ALT2 TSL 1 (best) BASIC10.53□□□□□ -0.72
Hmgb3O54879 Rbm6-207ENSMUST00000183032 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC10.53□□□□□ -0.72
Hmgb3O54879 Clec16a-201ENSMUST00000038145 3730 ntAPPRIS ALT2 TSL 1 (best) BASIC10.53□□□□□ -0.72
Hmgb3O54879 Zfp536-202ENSMUST00000175941 4423 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Hmgb3O54879 Commd1-201ENSMUST00000057843 1459 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Hmgb3O54879 Serpinb6d-201ENSMUST00000059637 1463 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Hmgb3O54879 Nrros-208ENSMUST00000143682 3577 ntAPPRIS ALT2 TSL 1 (best) BASIC10.53□□□□□ -0.72
Hmgb3O54879 Aifm2-203ENSMUST00000099706 3086 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Hmgb3O54879 Snap23-203ENSMUST00000116437 2730 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Hmgb3O54879 Agtrap-201ENSMUST00000030865 3996 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Hmgb3O54879 Myh11-201ENSMUST00000090287 6632 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Hmgb3O54879 Pla2g15-204ENSMUST00000212963 2578 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Hmgb3O54879 Sec23b-201ENSMUST00000028916 2779 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Hmgb3O54879 Gm5320-201ENSMUST00000207163 1519 ntBASIC10.53□□□□□ -0.72
Hmgb3O54879 Kif4-201ENSMUST00000048962 4983 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Hmgb3O54879 Rcor3-201ENSMUST00000073279 3748 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
Hmgb3O54879 Cep41-203ENSMUST00000115131 2256 ntAPPRIS ALT2 TSL 5 BASIC10.53□□□□□ -0.72
Hmgb3O54879 Chst4-201ENSMUST00000109222 1942 ntAPPRIS P2 TSL 1 (best) BASIC10.52□□□□□ -0.72
Hmgb3O54879 Olfr1234-202ENSMUST00000111543 1386 ntAPPRIS P1 TSL 2 BASIC10.52□□□□□ -0.72
Hmgb3O54879 Lgals12-203ENSMUST00000159983 2470 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.72
Hmgb3O54879 Trmt1-203ENSMUST00000109767 2138 ntAPPRIS P3 TSL 1 (best) BASIC10.52□□□□□ -0.72
Hmgb3O54879 Gm9742-201ENSMUST00000165220 1553 ntTSL 1 (best) BASIC10.52□□□□□ -0.72
Hmgb3O54879 Oas3-201ENSMUST00000044833 4720 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.72
Hmgb3O54879 Apol6-206ENSMUST00000149569 2315 ntAPPRIS ALT2 TSL 1 (best) BASIC10.52□□□□□ -0.72
Hmgb3O54879 Ngly1-207ENSMUST00000224656 2329 ntAPPRIS ALT2 BASIC10.52□□□□□ -0.72
Hmgb3O54879 Usp5-202ENSMUST00000122110 3076 ntAPPRIS ALT1 TSL 1 (best) BASIC10.52□□□□□ -0.72
Hmgb3O54879 Rgma-202ENSMUST00000119206 3481 ntTSL 1 (best) BASIC10.52□□□□□ -0.72
Hmgb3O54879 Rasgrp4-214ENSMUST00000205027 2717 ntTSL 5 BASIC10.52□□□□□ -0.72
Hmgb3O54879 Spata33-202ENSMUST00000212161 2941 ntTSL 2 BASIC10.52□□□□□ -0.72
Hmgb3O54879 Emilin1-201ENSMUST00000031055 3852 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.72
Hmgb3O54879 Qrich2-201ENSMUST00000093909 2156 ntAPPRIS P2 TSL 1 (best) BASIC10.52□□□□□ -0.72
Hmgb3O54879 Cep128-210ENSMUST00000141429 4807 ntAPPRIS P2 TSL 1 (best) BASIC10.52□□□□□ -0.72
Hmgb3O54879 Ackr4-202ENSMUST00000076147 2389 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Hmgb3O54879 Umod-206ENSMUST00000209095 2571 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Hmgb3O54879 Cdv3-203ENSMUST00000116517 3741 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
Hmgb3O54879 Tmcc2-206ENSMUST00000142609 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC10.52□□□□□ -0.73
Hmgb3O54879 Hadhb-201ENSMUST00000026841 2033 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Hmgb3O54879 Gm8410-201ENSMUST00000117225 605 ntBASIC10.52□□□□□ -0.73
Hmgb3O54879 1700007J10Rik-202ENSMUST00000153431 1111 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
Hmgb3O54879 Hsf4-207ENSMUST00000174837 1251 ntTSL 5 BASIC10.52□□□□□ -0.73
Hmgb3O54879 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC10.52□□□□□ -0.73
Hmgb3O54879 Gm10766-202ENSMUST00000194123 606 ntBASIC10.52□□□□□ -0.73
Hmgb3O54879 Nckipsd-206ENSMUST00000195323 467 ntTSL 3 BASIC10.52□□□□□ -0.73
Hmgb3O54879 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
Hmgb3O54879 Ftl1-ps1-202ENSMUST00000222435 938 ntAPPRIS P1 BASIC10.52□□□□□ -0.73
Hmgb3O54879 Rec114-201ENSMUST00000098674 883 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Hmgb3O54879 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Hmgb3O54879 Cwc27-201ENSMUST00000022228 2071 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Hmgb3O54879 1700001L05Rik-201ENSMUST00000100370 2270 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
Hmgb3O54879 Foxred1-202ENSMUST00000127996 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC10.52□□□□□ -0.73
Hmgb3O54879 Ptpn2-203ENSMUST00000122412 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC10.52□□□□□ -0.73
Hmgb3O54879 Lypd6-202ENSMUST00000112712 3495 ntAPPRIS P1 TSL 5 BASIC10.52□□□□□ -0.73
Hmgb3O54879 Vmn1r184-207ENSMUST00000228369 6361 ntAPPRIS P1 BASIC10.52□□□□□ -0.73
Hmgb3O54879 Steap3-203ENSMUST00000112641 5158 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Hmgb3O54879 Acp5-202ENSMUST00000115315 1349 ntAPPRIS P1 TSL 2 BASIC10.52□□□□□ -0.73
Hmgb3O54879 Mcm3ap-201ENSMUST00000170795 6427 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Hmgb3O54879 Ptp4a2-207ENSMUST00000165853 3382 ntAPPRIS P1 TSL 5 BASIC10.52□□□□□ -0.73
Hmgb3O54879 Cab39-201ENSMUST00000097666 2369 ntAPPRIS P1 TSL 5 BASIC10.52□□□□□ -0.73
Hmgb3O54879 Nox3-201ENSMUST00000115800 1792 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Hmgb3O54879 Shtn1-201ENSMUST00000047511 4081 ntAPPRIS P4 TSL 1 (best) BASIC10.52□□□□□ -0.73
Hmgb3O54879 Abcc5-204ENSMUST00000115547 5372 ntAPPRIS P1 TSL 5 BASIC10.52□□□□□ -0.73
Retrieved 100 of 76,532 protein–RNA pairs in 82.3 ms