Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Tomm5-204ENSMUST00000107810 639 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Lima1Q9ERG0 Isg20-202ENSMUST00000118867 697 ntAPPRIS P1 TSL 3 BASIC12.62□□□□□ -0.39
Lima1Q9ERG0 Gm12416-201ENSMUST00000120911 1008 ntBASIC12.62□□□□□ -0.39
Lima1Q9ERG0 Apoc3-203ENSMUST00000121916 709 ntTSL 2 BASIC12.62□□□□□ -0.39
Lima1Q9ERG0 Fbxw4-204ENSMUST00000160018 931 ntTSL 3 BASIC12.62□□□□□ -0.39
Lima1Q9ERG0 Il11-202ENSMUST00000163481 990 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Lima1Q9ERG0 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Lima1Q9ERG0 AC156504.2-201ENSMUST00000213800 711 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Lima1Q9ERG0 AC154687.2-201ENSMUST00000223853 640 ntBASIC12.62□□□□□ -0.39
Lima1Q9ERG0 Isg20-201ENSMUST00000038142 1083 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Lima1Q9ERG0 2010315B03Rik-202ENSMUST00000177714 2623 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Lima1Q9ERG0 Sorcs1-201ENSMUST00000072685 4396 ntTSL 5 BASIC12.62□□□□□ -0.39
Lima1Q9ERG0 Mrps26-202ENSMUST00000145614 4278 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Lima1Q9ERG0 Madd-212ENSMUST00000111375 5706 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
Lima1Q9ERG0 Tfdp2-205ENSMUST00000179416 2408 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
Lima1Q9ERG0 Fam177a-201ENSMUST00000177768 3922 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Lima1Q9ERG0 Trio-201ENSMUST00000090247 11495 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Lima1Q9ERG0 Kdm4d-201ENSMUST00000058796 2695 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Lima1Q9ERG0 Mkl1-209ENSMUST00000149582 4366 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Lima1Q9ERG0 Folr1-204ENSMUST00000106985 1313 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Lima1Q9ERG0 AC154262.2-202ENSMUST00000225158 1331 ntBASIC12.62□□□□□ -0.39
Lima1Q9ERG0 Mier1-205ENSMUST00000106858 4830 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
Lima1Q9ERG0 Tcf4-205ENSMUST00000114980 2192 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Lima1Q9ERG0 Ptprr-204ENSMUST00000128399 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Lima1Q9ERG0 Zfp82-201ENSMUST00000080834 2181 ntAPPRIS P3 TSL 5 BASIC12.62□□□□□ -0.39
Lima1Q9ERG0 Armcx2-203ENSMUST00000119010 3007 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Lima1Q9ERG0 Mtmr3-201ENSMUST00000040448 5534 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
Lima1Q9ERG0 Atp13a1-201ENSMUST00000034326 3915 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Lima1Q9ERG0 Cops4-201ENSMUST00000045993 1755 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Lima1Q9ERG0 Igtp-202ENSMUST00000094169 1767 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Lima1Q9ERG0 Rita1-207ENSMUST00000177800 1668 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
Lima1Q9ERG0 Gm44806-201ENSMUST00000205574 2303 ntBASIC12.61□□□□□ -0.39
Lima1Q9ERG0 Dnajc5g-201ENSMUST00000066544 1565 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
Lima1Q9ERG0 Thpo-201ENSMUST00000076422 1587 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Lima1Q9ERG0 Ttc17-202ENSMUST00000094801 3408 ntTSL 5 BASIC12.61□□□□□ -0.39
Lima1Q9ERG0 Gm10097-201ENSMUST00000180100 2784 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
Lima1Q9ERG0 Tekt2-201ENSMUST00000030658 1492 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Lima1Q9ERG0 Tspan13-201ENSMUST00000020896 1932 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Lima1Q9ERG0 Gm2670-201ENSMUST00000180668 2804 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Lima1Q9ERG0 Selenoh-203ENSMUST00000117299 747 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Lima1Q9ERG0 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC12.61□□□□□ -0.39
Lima1Q9ERG0 Gm15945-201ENSMUST00000146755 810 ntTSL 3 BASIC12.61□□□□□ -0.39
Lima1Q9ERG0 Gldnos-201ENSMUST00000149237 841 ntTSL 2 BASIC12.61□□□□□ -0.39
Lima1Q9ERG0 1600025M17Rik-202ENSMUST00000151426 547 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Lima1Q9ERG0 Pfdn5-205ENSMUST00000166658 1062 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Lima1Q9ERG0 Gm5866-201ENSMUST00000177881 973 ntBASIC12.61□□□□□ -0.39
Lima1Q9ERG0 2700012I20Rik-201ENSMUST00000180525 684 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Lima1Q9ERG0 Gm6473-201ENSMUST00000188572 1210 ntBASIC12.61□□□□□ -0.39
Lima1Q9ERG0 Gm20753-201ENSMUST00000190105 545 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Lima1Q9ERG0 Gm42550-201ENSMUST00000201553 960 ntBASIC12.61□□□□□ -0.39
Lima1Q9ERG0 Gm31816-201ENSMUST00000209388 1294 ntTSL 5 BASIC12.61□□□□□ -0.39
Lima1Q9ERG0 Gm45785-201ENSMUST00000209690 988 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
Lima1Q9ERG0 AC073947.2-201ENSMUST00000215888 1130 ntBASIC12.61□□□□□ -0.39
Lima1Q9ERG0 Ndufs6-201ENSMUST00000022097 568 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Lima1Q9ERG0 AC238811.3-201ENSMUST00000225422 709 ntBASIC12.61□□□□□ -0.39
Lima1Q9ERG0 AC138604.1-201ENSMUST00000226969 739 ntBASIC12.61□□□□□ -0.39
Lima1Q9ERG0 Olfr1410-201ENSMUST00000079790 969 ntTSL 5 BASIC12.61□□□□□ -0.39
Lima1Q9ERG0 Tyk2-206ENSMUST00000216874 4828 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Lima1Q9ERG0 Cacna1g-204ENSMUST00000107785 7523 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Lima1Q9ERG0 Pnma3-201ENSMUST00000060418 3405 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
Lima1Q9ERG0 Gm20687-203ENSMUST00000185121 4242 ntTSL 2 BASIC12.61□□□□□ -0.39
Lima1Q9ERG0 Nin-204ENSMUST00000169074 6636 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Lima1Q9ERG0 Atp1b2-201ENSMUST00000047889 2842 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Lima1Q9ERG0 Hkdc1-201ENSMUST00000020277 3517 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Lima1Q9ERG0 Nemp1-203ENSMUST00000118728 2362 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Lima1Q9ERG0 Myo10-201ENSMUST00000022882 5880 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Lima1Q9ERG0 Adamtsl3-204ENSMUST00000173828 2292 ntTSL 5 BASIC12.6□□□□□ -0.39
Lima1Q9ERG0 Vat1l-201ENSMUST00000049509 3666 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Lima1Q9ERG0 Pex19-201ENSMUST00000075895 1917 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Lima1Q9ERG0 Dnajc12-201ENSMUST00000043317 3025 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Lima1Q9ERG0 Tmem168-201ENSMUST00000031554 4587 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Lima1Q9ERG0 Ocln-203ENSMUST00000159459 1950 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Lima1Q9ERG0 Rasgef1a-202ENSMUST00000203482 2227 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
Lima1Q9ERG0 Brf2-201ENSMUST00000033877 1899 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Lima1Q9ERG0 Mrpl53-201ENSMUST00000113938 695 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Lima1Q9ERG0 Gm13689-201ENSMUST00000119360 685 ntBASIC12.6□□□□□ -0.39
Lima1Q9ERG0 Gm15821-201ENSMUST00000121995 1210 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Lima1Q9ERG0 Gm16342-201ENSMUST00000124025 1025 ntBASIC12.6□□□□□ -0.39
Lima1Q9ERG0 Gm15317-201ENSMUST00000129569 699 ntTSL 3 BASIC12.6□□□□□ -0.39
Lima1Q9ERG0 Pttg1ip-205ENSMUST00000162429 652 ntAPPRIS ALT2 TSL 2 BASIC12.6□□□□□ -0.39
Lima1Q9ERG0 Spag7-201ENSMUST00000018431 1159 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Lima1Q9ERG0 Mir7654-201ENSMUST00000185082 70 ntBASIC12.6□□□□□ -0.39
Lima1Q9ERG0 Gm29417-201ENSMUST00000188160 571 ntTSL 5 BASIC12.6□□□□□ -0.39
Lima1Q9ERG0 Platr12-202ENSMUST00000189722 549 ntTSL 3 BASIC12.6□□□□□ -0.39
Lima1Q9ERG0 Gm29608-201ENSMUST00000190444 463 ntBASIC12.6□□□□□ -0.39
Lima1Q9ERG0 Gm38223-201ENSMUST00000194484 695 ntBASIC12.6□□□□□ -0.39
Lima1Q9ERG0 Gm37917-201ENSMUST00000194711 392 ntBASIC12.6□□□□□ -0.39
Lima1Q9ERG0 AL593843.1-201ENSMUST00000195891 145 ntBASIC12.6□□□□□ -0.39
Lima1Q9ERG0 Gm43365-201ENSMUST00000196522 2106 ntBASIC12.6□□□□□ -0.39
Lima1Q9ERG0 Myl10-204ENSMUST00000197186 607 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Lima1Q9ERG0 Gm18307-201ENSMUST00000206864 949 ntBASIC12.6□□□□□ -0.39
Lima1Q9ERG0 Gm18624-201ENSMUST00000220966 658 ntBASIC12.6□□□□□ -0.39
Lima1Q9ERG0 AC134335.2-201ENSMUST00000227660 440 ntBASIC12.6□□□□□ -0.39
Lima1Q9ERG0 Uqcr10-201ENSMUST00000058407 434 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Lima1Q9ERG0 Pdzd11-202ENSMUST00000059099 1041 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Lima1Q9ERG0 Gm10188-201ENSMUST00000086544 720 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
Lima1Q9ERG0 Amer2-201ENSMUST00000022561 10506 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
Lima1Q9ERG0 Cd33-202ENSMUST00000039861 1791 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
Lima1Q9ERG0 Prodh-205ENSMUST00000136776 2041 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Lima1Q9ERG0 Dnaic2-202ENSMUST00000092469 2799 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 27.4 ms