Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 5330426L24Rik-201ENSMUST00000200008 2175 ntBASIC12.02□□□□□ -0.49
Ddx28Q9CWT6 Gm42890-202ENSMUST00000167642 2566 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Ddx28Q9CWT6 Setdb1-203ENSMUST00000107171 4573 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Ddx28Q9CWT6 Mslnl-201ENSMUST00000047098 2628 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Ddx28Q9CWT6 Slc22a16-201ENSMUST00000019978 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Ddx28Q9CWT6 Unc5c-202ENSMUST00000106236 9646 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Ddx28Q9CWT6 Mrvi1-202ENSMUST00000125758 5953 ntAPPRIS ALT2 TSL 2 BASIC12.02□□□□□ -0.49
Ddx28Q9CWT6 Pde9a-203ENSMUST00000127929 1891 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Ddx28Q9CWT6 Dnpep-209ENSMUST00000187836 1862 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
Ddx28Q9CWT6 Myo18a-205ENSMUST00000100794 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ddx28Q9CWT6 Pianp-206ENSMUST00000162000 2396 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
Ddx28Q9CWT6 Tbx6-202ENSMUST00000172352 1529 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Ddx28Q9CWT6 Ift140-201ENSMUST00000024983 5489 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ddx28Q9CWT6 Cyp8b1-201ENSMUST00000062474 1950 ntAPPRIS P1 BASIC12.01□□□□□ -0.49
Ddx28Q9CWT6 Sipa1l3-207ENSMUST00000182484 2420 ntTSL 5 BASIC12.01□□□□□ -0.49
Ddx28Q9CWT6 Gm26684-202ENSMUST00000228229 8257 ntBASIC12.01□□□□□ -0.49
Ddx28Q9CWT6 Tns2-202ENSMUST00000169627 4707 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ddx28Q9CWT6 Bop1-201ENSMUST00000023217 2476 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ddx28Q9CWT6 Nrg1-201ENSMUST00000073884 2452 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Ddx28Q9CWT6 Kdm3a-214ENSMUST00000207023 4753 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
Ddx28Q9CWT6 Gm12280-201ENSMUST00000155836 1624 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Ddx28Q9CWT6 Efhc1-201ENSMUST00000038447 2146 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ddx28Q9CWT6 Nexmif-202ENSMUST00000087879 10891 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ddx28Q9CWT6 Rin2-201ENSMUST00000094480 4657 ntAPPRIS P2 TSL 5 BASIC12.01□□□□□ -0.49
Ddx28Q9CWT6 Krt35-201ENSMUST00000103127 1722 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ddx28Q9CWT6 Calr3-201ENSMUST00000019876 1769 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ddx28Q9CWT6 Mogat2-201ENSMUST00000064231 1780 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ddx28Q9CWT6 Icam4-201ENSMUST00000001040 971 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ddx28Q9CWT6 Ctnnbip1-202ENSMUST00000105692 634 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ddx28Q9CWT6 Gm13185-201ENSMUST00000131044 944 ntTSL 3 BASIC12.01□□□□□ -0.49
Ddx28Q9CWT6 Gm15491-201ENSMUST00000133963 751 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Ddx28Q9CWT6 2410004P03Rik-203ENSMUST00000190691 953 ntTSL 2 BASIC12.01□□□□□ -0.49
Ddx28Q9CWT6 Gm28631-201ENSMUST00000190740 334 ntBASIC12.01□□□□□ -0.49
Ddx28Q9CWT6 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC12.01□□□□□ -0.49
Ddx28Q9CWT6 Ociad1-210ENSMUST00000202250 800 ntTSL 2 BASIC12.01□□□□□ -0.49
Ddx28Q9CWT6 Ccdc159-204ENSMUST00000216710 1126 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
Ddx28Q9CWT6 Tex12-202ENSMUST00000217236 1003 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ddx28Q9CWT6 Mpc1-201ENSMUST00000046754 920 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
Ddx28Q9CWT6 Smim11-201ENSMUST00000063641 517 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ddx28Q9CWT6 Cisd2-201ENSMUST00000029815 3361 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ddx28Q9CWT6 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ddx28Q9CWT6 Gm11978-202ENSMUST00000127510 1303 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Ddx28Q9CWT6 Tmem237-202ENSMUST00000094917 1869 ntAPPRIS P4 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ddx28Q9CWT6 Tjap1-201ENSMUST00000012440 2426 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ddx28Q9CWT6 Hadhb-202ENSMUST00000114783 2045 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ddx28Q9CWT6 Orc6-202ENSMUST00000170141 1466 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Ddx28Q9CWT6 Foxk1-201ENSMUST00000072837 7439 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ddx28Q9CWT6 Gja8-201ENSMUST00000062944 6940 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ddx28Q9CWT6 Cdc45-201ENSMUST00000000028 2143 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ddx28Q9CWT6 Gif-201ENSMUST00000025585 1537 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ddx28Q9CWT6 C130050O18Rik-201ENSMUST00000052176 1532 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ddx28Q9CWT6 Gm14685-202ENSMUST00000179117 2773 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ddx28Q9CWT6 Gm45650-201ENSMUST00000211162 2169 ntTSL 5 BASIC12.01□□□□□ -0.49
Ddx28Q9CWT6 Dnaic2-201ENSMUST00000069325 2874 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
Ddx28Q9CWT6 Mixl1-201ENSMUST00000027778 2294 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Ddx28Q9CWT6 Gm5859-201ENSMUST00000165401 2324 ntBASIC12□□□□□ -0.49
Ddx28Q9CWT6 Senp3-201ENSMUST00000005336 2313 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Ddx28Q9CWT6 Cxadr-202ENSMUST00000114229 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Ddx28Q9CWT6 Pdlim7-201ENSMUST00000046246 1697 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Ddx28Q9CWT6 Gm10604-201ENSMUST00000098260 1706 ntAPPRIS P1 BASIC12□□□□□ -0.49
Ddx28Q9CWT6 Rabep1-203ENSMUST00000100928 3860 ntTSL 5 BASIC12□□□□□ -0.49
Ddx28Q9CWT6 Zic4-209ENSMUST00000173933 1764 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
Ddx28Q9CWT6 Cul9-204ENSMUST00000182485 7848 ntAPPRIS P2 TSL 5 BASIC12□□□□□ -0.49
Ddx28Q9CWT6 Dcaf1-202ENSMUST00000159645 4945 ntTSL 1 (best) BASIC12□□□□□ -0.49
Ddx28Q9CWT6 Gpat3-201ENSMUST00000031255 2884 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Ddx28Q9CWT6 Ighv5-17-201ENSMUST00000103459 405 ntAPPRIS P1 BASIC12□□□□□ -0.49
Ddx28Q9CWT6 Isg20-202ENSMUST00000118867 697 ntAPPRIS P1 TSL 3 BASIC12□□□□□ -0.49
Ddx28Q9CWT6 Gm15222-201ENSMUST00000127359 344 ntTSL 3 BASIC12□□□□□ -0.49
Ddx28Q9CWT6 Gm15317-201ENSMUST00000129569 699 ntTSL 3 BASIC12□□□□□ -0.49
Ddx28Q9CWT6 Rpl34-203ENSMUST00000133802 711 ntTSL 2 BASIC12□□□□□ -0.49
Ddx28Q9CWT6 Gm7558-201ENSMUST00000193221 1165 ntBASIC12□□□□□ -0.49
Ddx28Q9CWT6 Gm45841-201ENSMUST00000207700 164 ntBASIC12□□□□□ -0.49
Ddx28Q9CWT6 AC073947.2-201ENSMUST00000215888 1130 ntBASIC12□□□□□ -0.49
Ddx28Q9CWT6 Isg20-201ENSMUST00000038142 1083 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Ddx28Q9CWT6 Zufsp-201ENSMUST00000048222 2991 ntTSL 1 (best) BASIC12□□□□□ -0.49
Ddx28Q9CWT6 Olfr750-201ENSMUST00000048478 1132 ntAPPRIS P1 BASIC12□□□□□ -0.49
Ddx28Q9CWT6 Ap5b1-201ENSMUST00000096318 3092 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Ddx28Q9CWT6 Ugt1a6a-201ENSMUST00000014263 2265 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Ddx28Q9CWT6 Zbtb2-202ENSMUST00000100078 3226 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Ddx28Q9CWT6 Gm38385-201ENSMUST00000194454 2351 ntBASIC12□□□□□ -0.49
Ddx28Q9CWT6 Zfp526-201ENSMUST00000055604 3380 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Ddx28Q9CWT6 Tbc1d1-204ENSMUST00000121370 5419 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
Ddx28Q9CWT6 AI597479-201ENSMUST00000010434 3458 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Ddx28Q9CWT6 Tbc1d14-210ENSMUST00000140607 4649 ntAPPRIS P3 TSL 5 BASIC12□□□□□ -0.49
Ddx28Q9CWT6 Gm9195-201ENSMUST00000208955 8870 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
Ddx28Q9CWT6 Lrrc8c-201ENSMUST00000067924 6976 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Ddx28Q9CWT6 Mab21l3-202ENSMUST00000118411 2700 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Ddx28Q9CWT6 Alkbh4-201ENSMUST00000041100 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Ddx28Q9CWT6 Tinf2-201ENSMUST00000007733 2956 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
Ddx28Q9CWT6 Ildr1-201ENSMUST00000023617 3042 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Ddx28Q9CWT6 St6galnac5-201ENSMUST00000044278 5667 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Ddx28Q9CWT6 Trim26-210ENSMUST00000179968 3203 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
Ddx28Q9CWT6 Myo5b-203ENSMUST00000121875 6065 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
Ddx28Q9CWT6 Hjurp-206ENSMUST00000147393 2030 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Ddx28Q9CWT6 Cyth3-201ENSMUST00000110727 2068 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Ddx28Q9CWT6 Drd1-201ENSMUST00000021932 3526 ntAPPRIS P2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ddx28Q9CWT6 Mtus1-202ENSMUST00000059115 6548 ntTSL 5 BASIC11.99□□□□□ -0.49
Ddx28Q9CWT6 Zap70-201ENSMUST00000027291 2245 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ddx28Q9CWT6 Zbtb40-201ENSMUST00000049583 7192 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ddx28Q9CWT6 0610009O20Rik-201ENSMUST00000025314 2404 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms