Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 1700037H04Rik-202ENSMUST00000103188 1241 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
Ccdc40Q8BI79 Trav13d-2-201ENSMUST00000103596 264 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
Ccdc40Q8BI79 Trav13n-2-201ENSMUST00000103622 264 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
Ccdc40Q8BI79 Gm16202-201ENSMUST00000117532 544 ntBASIC13.39□□□□□ -0.27
Ccdc40Q8BI79 Gm5303-201ENSMUST00000117943 1252 ntBASIC13.39□□□□□ -0.27
Ccdc40Q8BI79 Xrcc2-204ENSMUST00000134972 464 ntTSL 3 BASIC13.39□□□□□ -0.27
Ccdc40Q8BI79 Arid2-202ENSMUST00000134985 809 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Ccdc40Q8BI79 Smad7-204ENSMUST00000174411 769 ntTSL 5 BASIC13.39□□□□□ -0.27
Ccdc40Q8BI79 Zfp936-202ENSMUST00000200973 578 ntTSL 3 BASIC13.39□□□□□ -0.27
Ccdc40Q8BI79 Trmt112-ps1-201ENSMUST00000202320 375 ntBASIC13.39□□□□□ -0.27
Ccdc40Q8BI79 2310016G11Rik-202ENSMUST00000209111 733 ntTSL 3 BASIC13.39□□□□□ -0.27
Ccdc40Q8BI79 Sct-204ENSMUST00000211667 506 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
Ccdc40Q8BI79 Gm33460-201ENSMUST00000212286 536 ntTSL 5 BASIC13.39□□□□□ -0.27
Ccdc40Q8BI79 Tex12-202ENSMUST00000217236 1003 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Ccdc40Q8BI79 Emc4-201ENSMUST00000028551 983 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Ccdc40Q8BI79 Gm6180-201ENSMUST00000065243 498 ntBASIC13.39□□□□□ -0.27
Ccdc40Q8BI79 Lyzl4-201ENSMUST00000077706 996 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Ccdc40Q8BI79 Prok2-203ENSMUST00000101120 1450 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Ccdc40Q8BI79 Acoxl-202ENSMUST00000110344 1573 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Ccdc40Q8BI79 Slc25a5-ps-202ENSMUST00000223716 1786 ntBASIC13.39□□□□□ -0.27
Ccdc40Q8BI79 Snx13-201ENSMUST00000048519 6231 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Ccdc40Q8BI79 Rph3al-204ENSMUST00000121287 2199 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Ccdc40Q8BI79 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Ccdc40Q8BI79 Zfp772-201ENSMUST00000074455 2777 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Ccdc40Q8BI79 Pdzrn4-202ENSMUST00000169942 3851 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Ccdc40Q8BI79 Tnks1bp1-201ENSMUST00000048400 4799 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Ccdc40Q8BI79 Six4-202ENSMUST00000175693 6817 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
Ccdc40Q8BI79 Rhobtb1-205ENSMUST00000164034 2421 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Ccdc40Q8BI79 Olfr177-202ENSMUST00000217377 2401 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Ccdc40Q8BI79 Ngly1-207ENSMUST00000224656 2329 ntAPPRIS ALT2 BASIC13.39□□□□□ -0.27
Ccdc40Q8BI79 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC13.39□□□□□ -0.27
Ccdc40Q8BI79 Kir3dl1-202ENSMUST00000113105 1544 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Ccdc40Q8BI79 Ubap2l-202ENSMUST00000064639 4073 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Ccdc40Q8BI79 Brms1-201ENSMUST00000116567 1338 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Ccdc40Q8BI79 Ddr1-204ENSMUST00000119825 3769 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
Ccdc40Q8BI79 Il2rb-201ENSMUST00000089398 2692 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ccdc40Q8BI79 Tbl1xr1-211ENSMUST00000202747 4209 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ccdc40Q8BI79 Cerk-203ENSMUST00000156546 2162 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Ccdc40Q8BI79 Nsun7-204ENSMUST00000202994 3632 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Ccdc40Q8BI79 Psmd1-201ENSMUST00000027432 3112 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ccdc40Q8BI79 Krba1-203ENSMUST00000114571 6695 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Ccdc40Q8BI79 S1pr1-201ENSMUST00000055676 3046 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ccdc40Q8BI79 Olfr157-202ENSMUST00000215442 1766 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
Ccdc40Q8BI79 Sstr5-201ENSMUST00000051864 2733 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ccdc40Q8BI79 Wdr45-204ENSMUST00000115689 1568 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ccdc40Q8BI79 Gm9025-201ENSMUST00000122415 1575 ntBASIC13.38□□□□□ -0.27
Ccdc40Q8BI79 AC113060.1-201ENSMUST00000225689 1573 ntBASIC13.38□□□□□ -0.27
Ccdc40Q8BI79 Ctbs-201ENSMUST00000029840 2629 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ccdc40Q8BI79 March7-203ENSMUST00000102748 3594 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ccdc40Q8BI79 Gm45643-201ENSMUST00000211364 1484 ntBASIC13.38□□□□□ -0.27
Ccdc40Q8BI79 Slc22a16-201ENSMUST00000019978 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ccdc40Q8BI79 Gm14350-201ENSMUST00000116642 640 ntBASIC13.38□□□□□ -0.27
Ccdc40Q8BI79 Akirin1-ps-201ENSMUST00000119676 458 ntBASIC13.38□□□□□ -0.27
Ccdc40Q8BI79 St6galnac6-209ENSMUST00000131229 1013 ntTSL 2 BASIC13.38□□□□□ -0.27
Ccdc40Q8BI79 Egfl7-208ENSMUST00000149789 683 ntTSL 3 BASIC13.38□□□□□ -0.27
Ccdc40Q8BI79 Arhgap20os-204ENSMUST00000152203 2113 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Ccdc40Q8BI79 Gm23984-201ENSMUST00000157139 203 ntBASIC13.38□□□□□ -0.27
Ccdc40Q8BI79 Ube2i-211ENSMUST00000173713 890 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ccdc40Q8BI79 1600017P15Rik-202ENSMUST00000193960 890 ntBASIC13.38□□□□□ -0.27
Ccdc40Q8BI79 Gm44069-201ENSMUST00000204898 506 ntBASIC13.38□□□□□ -0.27
Ccdc40Q8BI79 AC162801.1-201ENSMUST00000220612 198 ntBASIC13.38□□□□□ -0.27
Ccdc40Q8BI79 AC150560.1-201ENSMUST00000227731 1187 ntBASIC13.38□□□□□ -0.27
Ccdc40Q8BI79 Aga-201ENSMUST00000033920 1181 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ccdc40Q8BI79 Egr2-201ENSMUST00000048289 2965 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ccdc40Q8BI79 Slurp1-202ENSMUST00000190433 2859 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ccdc40Q8BI79 Podn-201ENSMUST00000044248 2885 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
Ccdc40Q8BI79 Coq3-201ENSMUST00000029909 2651 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ccdc40Q8BI79 Nono-201ENSMUST00000033673 2562 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ccdc40Q8BI79 Gm1661-203ENSMUST00000165128 1837 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
Ccdc40Q8BI79 Hsd3b7-201ENSMUST00000046863 1828 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ccdc40Q8BI79 1700001L05Rik-201ENSMUST00000100370 2270 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Ccdc40Q8BI79 Anxa7-202ENSMUST00000100844 2904 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ccdc40Q8BI79 Ddx17-201ENSMUST00000054014 4761 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ccdc40Q8BI79 Sfxn3-202ENSMUST00000084493 2843 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Ccdc40Q8BI79 Kifc5c-ps-201ENSMUST00000179040 1530 ntBASIC13.38□□□□□ -0.27
Ccdc40Q8BI79 Irak1-203ENSMUST00000101458 2052 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
Ccdc40Q8BI79 Lypla1-201ENSMUST00000027036 2507 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ccdc40Q8BI79 Gm42957-201ENSMUST00000137564 3624 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
Ccdc40Q8BI79 Asl-203ENSMUST00000160129 2413 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
Ccdc40Q8BI79 Eme1-201ENSMUST00000039949 2444 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ccdc40Q8BI79 Gm14149-201ENSMUST00000123048 1853 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Ccdc40Q8BI79 Ticrr-201ENSMUST00000035977 7199 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ccdc40Q8BI79 Actr8-204ENSMUST00000224797 2328 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
Ccdc40Q8BI79 Tmc4-201ENSMUST00000038743 2310 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ccdc40Q8BI79 Pif1-202ENSMUST00000131483 3309 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Ccdc40Q8BI79 Abhd6-202ENSMUST00000166497 2226 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Ccdc40Q8BI79 Reln-207ENSMUST00000161356 11699 ntAPPRIS P3 TSL 5 BASIC13.37□□□□□ -0.27
Ccdc40Q8BI79 2410002F23Rik-204ENSMUST00000107948 2908 ntAPPRIS P2 TSL 2 BASIC13.37□□□□□ -0.27
Ccdc40Q8BI79 Klf11-201ENSMUST00000020982 4086 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Ccdc40Q8BI79 Lipe-201ENSMUST00000003207 3613 ntAPPRIS P4 TSL 1 (best) BASIC13.37□□□□□ -0.27
Ccdc40Q8BI79 Trim34b-201ENSMUST00000106847 1827 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Ccdc40Q8BI79 Aqp6-201ENSMUST00000023754 2060 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Ccdc40Q8BI79 Gm11978-201ENSMUST00000122315 466 ntBASIC13.37□□□□□ -0.27
Ccdc40Q8BI79 Prss55-203ENSMUST00000171503 1074 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Ccdc40Q8BI79 2610300A13Rik-201ENSMUST00000192930 503 ntBASIC13.37□□□□□ -0.27
Ccdc40Q8BI79 Gm44064-201ENSMUST00000204964 1087 ntBASIC13.37□□□□□ -0.27
Ccdc40Q8BI79 AC159006.1-201ENSMUST00000226396 258 ntBASIC13.37□□□□□ -0.27
Ccdc40Q8BI79 Madd-212ENSMUST00000111375 5706 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
Ccdc40Q8BI79 Acy1-201ENSMUST00000024031 1529 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Ccdc40Q8BI79 Aldh9a1-201ENSMUST00000028004 2835 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 30.4 ms