Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Rnf43-203ENSMUST00000121782 2640 ntTSL 5 BASIC12.64□□□□□ -0.39
Lima1Q9ERG0 Prkag3-202ENSMUST00000113672 2003 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Lima1Q9ERG0 Nr3c1-201ENSMUST00000025300 4989 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Lima1Q9ERG0 Adk-201ENSMUST00000045376 1782 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Lima1Q9ERG0 Lpar1-205ENSMUST00000107575 3421 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
Lima1Q9ERG0 Sorl1-201ENSMUST00000060989 10715 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Lima1Q9ERG0 Ptgdr-201ENSMUST00000095959 3187 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Lima1Q9ERG0 Rin3-201ENSMUST00000056950 3892 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
Lima1Q9ERG0 C130050O18Rik-201ENSMUST00000052176 1532 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Lima1Q9ERG0 Gm43061-201ENSMUST00000198850 2241 ntBASIC12.64□□□□□ -0.39
Lima1Q9ERG0 Btnl2-202ENSMUST00000178562 2563 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Lima1Q9ERG0 Btnl2-201ENSMUST00000025198 2564 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Lima1Q9ERG0 Rbm12b1-201ENSMUST00000050069 2949 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Lima1Q9ERG0 Polm-202ENSMUST00000109837 2697 ntTSL 5 BASIC12.64□□□□□ -0.39
Lima1Q9ERG0 Zfp961-202ENSMUST00000131237 2689 ntAPPRIS ALT2 TSL 3 BASIC12.64□□□□□ -0.39
Lima1Q9ERG0 Rasgrp2-207ENSMUST00000113475 573 ntTSL 5 BASIC12.64□□□□□ -0.39
Lima1Q9ERG0 Grin1-205ENSMUST00000114312 3838 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Lima1Q9ERG0 Grin1-207ENSMUST00000114317 3809 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Lima1Q9ERG0 Rhox2d-201ENSMUST00000115179 685 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
Lima1Q9ERG0 Gm12341-201ENSMUST00000119724 503 ntBASIC12.64□□□□□ -0.39
Lima1Q9ERG0 Gnb2-209ENSMUST00000143495 1285 ntTSL 5 BASIC12.64□□□□□ -0.39
Lima1Q9ERG0 Lamtor3-201ENSMUST00000168345 1295 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Lima1Q9ERG0 Pax5-213ENSMUST00000173821 996 ntTSL 5 BASIC12.64□□□□□ -0.39
Lima1Q9ERG0 Gltpd2-202ENSMUST00000179000 794 ntAPPRIS ALT2 TSL 2 BASIC12.64□□□□□ -0.39
Lima1Q9ERG0 Gm7558-201ENSMUST00000193221 1165 ntBASIC12.64□□□□□ -0.39
Lima1Q9ERG0 Ip6k2-210ENSMUST00000194875 748 ntTSL 2 BASIC12.64□□□□□ -0.39
Lima1Q9ERG0 Pomc-202ENSMUST00000218089 977 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Lima1Q9ERG0 Gm5626-201ENSMUST00000222151 1058 ntBASIC12.64□□□□□ -0.39
Lima1Q9ERG0 Cd302-201ENSMUST00000028356 1257 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
Lima1Q9ERG0 Ccdc58-201ENSMUST00000099937 747 ntTSL 3 BASIC12.64□□□□□ -0.39
Lima1Q9ERG0 Ercc2-202ENSMUST00000108460 3485 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Lima1Q9ERG0 Eps15l1-201ENSMUST00000163643 3129 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Lima1Q9ERG0 1110046J04Rik-202ENSMUST00000180906 2776 ntBASIC12.64□□□□□ -0.39
Lima1Q9ERG0 Pced1b-201ENSMUST00000059433 2185 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Lima1Q9ERG0 Fam217a-204ENSMUST00000225242 1811 ntAPPRIS ALT2 BASIC12.64□□□□□ -0.39
Lima1Q9ERG0 Chrna9-201ENSMUST00000031108 1843 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Lima1Q9ERG0 Kcnt1-212ENSMUST00000197917 3711 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Lima1Q9ERG0 Fam234b-202ENSMUST00000111916 2927 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Lima1Q9ERG0 Larp1b-205ENSMUST00000191805 1581 ntAPPRIS P2 TSL 5 BASIC12.64□□□□□ -0.39
Lima1Q9ERG0 Nsmce2-202ENSMUST00000168722 2679 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Lima1Q9ERG0 2810429I04Rik-203ENSMUST00000181708 4769 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Lima1Q9ERG0 Ppp3r1-201ENSMUST00000102880 2859 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Lima1Q9ERG0 Apol7a-201ENSMUST00000010745 1431 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Lima1Q9ERG0 Vill-203ENSMUST00000126251 1411 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Lima1Q9ERG0 Rab11fip3-203ENSMUST00000122103 5015 ntAPPRIS P4 TSL 1 (best) BASIC12.63□□□□□ -0.39
Lima1Q9ERG0 Gm45833-201ENSMUST00000211931 2730 ntTSL 5 BASIC12.63□□□□□ -0.39
Lima1Q9ERG0 Duoxa1-202ENSMUST00000110537 1506 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Lima1Q9ERG0 Ate1-204ENSMUST00000178534 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Lima1Q9ERG0 Stx17-201ENSMUST00000064765 1531 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
Lima1Q9ERG0 Gm12280-201ENSMUST00000155836 1624 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Lima1Q9ERG0 Kdm1b-201ENSMUST00000037025 4987 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Lima1Q9ERG0 Rassf8-201ENSMUST00000032388 1733 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Lima1Q9ERG0 Ccdc114-201ENSMUST00000038720 2460 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Lima1Q9ERG0 E2f7-201ENSMUST00000073781 5473 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Lima1Q9ERG0 Gm17276-201ENSMUST00000180839 2782 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Lima1Q9ERG0 Hjurp-206ENSMUST00000147393 2030 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Lima1Q9ERG0 Ghr-203ENSMUST00000110698 1171 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Lima1Q9ERG0 Kir3dl1-201ENSMUST00000113104 1031 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Lima1Q9ERG0 Prrx2-202ENSMUST00000113592 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Lima1Q9ERG0 Met-202ENSMUST00000115442 4663 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
Lima1Q9ERG0 Gm12859-201ENSMUST00000117834 427 ntBASIC12.63□□□□□ -0.39
Lima1Q9ERG0 Gm13185-201ENSMUST00000131044 944 ntTSL 3 BASIC12.63□□□□□ -0.39
Lima1Q9ERG0 Gm26600-201ENSMUST00000181637 1256 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Lima1Q9ERG0 2410002F23Rik-214ENSMUST00000186606 748 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
Lima1Q9ERG0 Gm44124-201ENSMUST00000204159 472 ntBASIC12.63□□□□□ -0.39
Lima1Q9ERG0 AC156560.2-201ENSMUST00000221232 264 ntBASIC12.63□□□□□ -0.39
Lima1Q9ERG0 Taf11-201ENSMUST00000025057 1220 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Lima1Q9ERG0 Tmem86b-201ENSMUST00000055085 1222 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Lima1Q9ERG0 Eapp-201ENSMUST00000067272 590 ntTSL 3 BASIC12.63□□□□□ -0.39
Lima1Q9ERG0 Gm8617-201ENSMUST00000118796 2222 ntBASIC12.63□□□□□ -0.39
Lima1Q9ERG0 2610507I01Rik-201ENSMUST00000154354 1360 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Lima1Q9ERG0 Fam71f1-204ENSMUST00000166462 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Lima1Q9ERG0 Rwdd2a-201ENSMUST00000034988 1355 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Lima1Q9ERG0 Dag1-204ENSMUST00000191899 5662 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Lima1Q9ERG0 Aknad1-202ENSMUST00000133931 2603 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Lima1Q9ERG0 Arhgef40-202ENSMUST00000100639 4843 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Lima1Q9ERG0 Slitrk5-201ENSMUST00000042767 4831 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
Lima1Q9ERG0 Cend1-203ENSMUST00000137488 1697 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Lima1Q9ERG0 Reln-201ENSMUST00000062372 10885 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
Lima1Q9ERG0 Myo18a-221ENSMUST00000167856 6132 ntTSL 5 BASIC12.63□□□□□ -0.39
Lima1Q9ERG0 Serpinf2-202ENSMUST00000108437 2179 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Lima1Q9ERG0 Rph3al-204ENSMUST00000121287 2199 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
Lima1Q9ERG0 Nr2c2-202ENSMUST00000113463 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Lima1Q9ERG0 Usp5-202ENSMUST00000122110 3076 ntAPPRIS ALT1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Lima1Q9ERG0 Slc22a5-201ENSMUST00000019044 3062 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Lima1Q9ERG0 Ccdc85a-202ENSMUST00000093253 5431 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
Lima1Q9ERG0 Gm11978-202ENSMUST00000127510 1303 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Lima1Q9ERG0 Cyb561d1-201ENSMUST00000065664 4058 ntAPPRIS ALT1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Lima1Q9ERG0 Cad-201ENSMUST00000013773 7137 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Lima1Q9ERG0 Tbx6-202ENSMUST00000172352 1529 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Lima1Q9ERG0 Pfn4-204ENSMUST00000219503 4775 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Lima1Q9ERG0 Gm9279-201ENSMUST00000223175 1606 ntBASIC12.62□□□□□ -0.39
Lima1Q9ERG0 Lnx1-209ENSMUST00000153543 2208 ntTSL 5 BASIC12.62□□□□□ -0.39
Lima1Q9ERG0 Slc25a24-201ENSMUST00000029477 3431 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Lima1Q9ERG0 Slc23a4-201ENSMUST00000044387 2175 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Lima1Q9ERG0 Slc30a3-206ENSMUST00000202740 1989 ntTSL 5 BASIC12.62□□□□□ -0.39
Lima1Q9ERG0 Zfp354c-202ENSMUST00000109135 5325 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Lima1Q9ERG0 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC12.62□□□□□ -0.39
Lima1Q9ERG0 Cxadr-202ENSMUST00000114229 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Lima1Q9ERG0 Zfp641-201ENSMUST00000023722 4212 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms