Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 BC048403-202ENSMUST00000136432 2968 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Vps28Q9D1C8 Sgsm3-208ENSMUST00000139517 2996 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Vps28Q9D1C8 Mpp3-204ENSMUST00000107168 3094 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
Vps28Q9D1C8 Sema7a-201ENSMUST00000043059 3297 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Vps28Q9D1C8 Iqsec3-203ENSMUST00000151397 8067 ntTSL 2 BASIC13.14□□□□□ -0.31
Vps28Q9D1C8 Atp8a1-201ENSMUST00000037380 8178 ntAPPRIS P4 TSL 1 (best) BASIC13.14□□□□□ -0.31
Vps28Q9D1C8 Apol9b-201ENSMUST00000109775 1545 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Vps28Q9D1C8 4930488N24Rik-201ENSMUST00000188802 1527 ntBASIC13.13□□□□□ -0.31
Vps28Q9D1C8 Max-201ENSMUST00000082136 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Vps28Q9D1C8 Necab1-202ENSMUST00000108273 2135 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Vps28Q9D1C8 Pigh-201ENSMUST00000072154 2339 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Vps28Q9D1C8 Arhgef2-229ENSMUST00000177303 3000 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
Vps28Q9D1C8 CT009713.10-201ENSMUST00000225013 1986 ntBASIC13.13□□□□□ -0.31
Vps28Q9D1C8 Gm38157-201ENSMUST00000194178 1698 ntBASIC13.13□□□□□ -0.31
Vps28Q9D1C8 Bcs1l-203ENSMUST00000113733 1488 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Vps28Q9D1C8 Gpr12-203ENSMUST00000197431 1455 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Vps28Q9D1C8 Psmd13-208ENSMUST00000163610 1382 ntTSL 5 BASIC13.13□□□□□ -0.31
Vps28Q9D1C8 Gm11591-201ENSMUST00000120063 702 ntBASIC13.13□□□□□ -0.31
Vps28Q9D1C8 Gm13562-201ENSMUST00000125198 797 ntTSL 2 BASIC13.13□□□□□ -0.31
Vps28Q9D1C8 Gm18054-201ENSMUST00000207539 555 ntBASIC13.13□□□□□ -0.31
Vps28Q9D1C8 Gm6013-201ENSMUST00000212264 699 ntBASIC13.13□□□□□ -0.31
Vps28Q9D1C8 Gm17823-201ENSMUST00000217830 1006 ntBASIC13.13□□□□□ -0.31
Vps28Q9D1C8 Gm9823-201ENSMUST00000051212 327 ntBASIC13.13□□□□□ -0.31
Vps28Q9D1C8 Arhgef37-201ENSMUST00000171629 3234 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
Vps28Q9D1C8 Mb21d1-201ENSMUST00000034898 3231 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Vps28Q9D1C8 Kdm4b-201ENSMUST00000025036 4577 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Vps28Q9D1C8 Srd5a1-202ENSMUST00000091514 2644 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Vps28Q9D1C8 Nrf1-209ENSMUST00000115209 2406 ntTSL 5 BASIC13.13□□□□□ -0.31
Vps28Q9D1C8 Ttc25-202ENSMUST00000092684 2240 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Vps28Q9D1C8 Otx2-201ENSMUST00000118578 2144 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Vps28Q9D1C8 Atp9a-204ENSMUST00000109177 3456 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Vps28Q9D1C8 Prkcd-202ENSMUST00000112202 2005 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Vps28Q9D1C8 Mul1-201ENSMUST00000044058 3733 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Vps28Q9D1C8 Gm27196-201ENSMUST00000184787 2582 ntBASIC13.13□□□□□ -0.31
Vps28Q9D1C8 Esyt3-201ENSMUST00000042158 4483 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Vps28Q9D1C8 Kifc1-204ENSMUST00000173492 2350 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Vps28Q9D1C8 Ptk2-201ENSMUST00000110036 4184 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Vps28Q9D1C8 Taf1c-201ENSMUST00000093099 3236 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Vps28Q9D1C8 Mdm2-202ENSMUST00000105263 3145 ntTSL 5 BASIC13.13□□□□□ -0.31
Vps28Q9D1C8 Dcaf7-201ENSMUST00000058438 5750 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Vps28Q9D1C8 Gm8793-201ENSMUST00000183069 1303 ntBASIC13.13□□□□□ -0.31
Vps28Q9D1C8 Nol4-206ENSMUST00000164186 2622 ntAPPRIS P4 TSL 5 BASIC13.12□□□□□ -0.31
Vps28Q9D1C8 4933417C20Rik-201ENSMUST00000193962 1874 ntBASIC13.12□□□□□ -0.31
Vps28Q9D1C8 Whamm-203ENSMUST00000209044 1879 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Vps28Q9D1C8 Fam171a1-201ENSMUST00000062934 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Vps28Q9D1C8 Pgpep1-201ENSMUST00000070173 4883 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Vps28Q9D1C8 M6pr-202ENSMUST00000112610 2539 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
Vps28Q9D1C8 M6pr-201ENSMUST00000007602 2515 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Vps28Q9D1C8 Trpv4-202ENSMUST00000112217 2436 ntTSL 5 BASIC13.12□□□□□ -0.31
Vps28Q9D1C8 Ucp3-201ENSMUST00000032958 2448 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Vps28Q9D1C8 Fen1-201ENSMUST00000025651 2341 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Vps28Q9D1C8 Fetub-201ENSMUST00000023587 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Vps28Q9D1C8 Prkca-201ENSMUST00000059595 8409 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Vps28Q9D1C8 Gm12329-201ENSMUST00000120829 1007 ntBASIC13.12□□□□□ -0.31
Vps28Q9D1C8 Gm15635-202ENSMUST00000131160 917 ntTSL 3 BASIC13.12□□□□□ -0.31
Vps28Q9D1C8 Gm12843-201ENSMUST00000137607 601 ntTSL 3 BASIC13.12□□□□□ -0.31
Vps28Q9D1C8 Ppm1h-208ENSMUST00000162969 811 ntTSL 3 BASIC13.12□□□□□ -0.31
Vps28Q9D1C8 1190007I07Rik-205ENSMUST00000185168 469 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
Vps28Q9D1C8 Ggt5-203ENSMUST00000189972 648 ntTSL 3 BASIC13.12□□□□□ -0.31
Vps28Q9D1C8 Gm20083-202ENSMUST00000206663 1008 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Vps28Q9D1C8 Gm19309-201ENSMUST00000218295 205 ntBASIC13.12□□□□□ -0.31
Vps28Q9D1C8 AC152453.1-201ENSMUST00000218802 1254 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Vps28Q9D1C8 AC159263.1-201ENSMUST00000220746 482 ntTSL 5 BASIC13.12□□□□□ -0.31
Vps28Q9D1C8 AC133598.1-201ENSMUST00000224327 660 ntBASIC13.12□□□□□ -0.31
Vps28Q9D1C8 Gm8399-201ENSMUST00000082300 1117 ntBASIC13.12□□□□□ -0.31
Vps28Q9D1C8 Rcbtb2-202ENSMUST00000110952 2176 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Vps28Q9D1C8 Slc34a3-201ENSMUST00000006638 2183 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Vps28Q9D1C8 Nup205-204ENSMUST00000201374 6411 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Vps28Q9D1C8 Tceanc2-202ENSMUST00000057043 6431 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Vps28Q9D1C8 Stard8-201ENSMUST00000036606 4963 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Vps28Q9D1C8 Dnajb5-203ENSMUST00000098112 3093 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Vps28Q9D1C8 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC13.12□□□□□ -0.31
Vps28Q9D1C8 Tubb2a-201ENSMUST00000056427 1610 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Vps28Q9D1C8 Bcl9l-201ENSMUST00000074989 5339 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Vps28Q9D1C8 Pdcd6ip-202ENSMUST00000111861 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Vps28Q9D1C8 Zfp207-206ENSMUST00000165565 2311 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Vps28Q9D1C8 Igsf23-204ENSMUST00000208974 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Vps28Q9D1C8 Cldn18-204ENSMUST00000136429 1409 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Vps28Q9D1C8 Mfsd14b-201ENSMUST00000054730 3251 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
Vps28Q9D1C8 Rnft2-202ENSMUST00000121369 4431 ntAPPRIS ALT1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Vps28Q9D1C8 Atat1-212ENSMUST00000141662 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Vps28Q9D1C8 Uspl1-205ENSMUST00000121416 3792 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Vps28Q9D1C8 Cep68-201ENSMUST00000050611 4804 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Vps28Q9D1C8 Arhgap10-202ENSMUST00000210519 2295 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Vps28Q9D1C8 Kif13a-201ENSMUST00000056978 6866 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Vps28Q9D1C8 Dhx30-201ENSMUST00000062368 3806 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Vps28Q9D1C8 Ube2a-201ENSMUST00000016452 1732 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
Vps28Q9D1C8 Olfr649-202ENSMUST00000106859 1382 ntAPPRIS P1 TSL 3 BASIC13.11□□□□□ -0.31
Vps28Q9D1C8 Gm42829-201ENSMUST00000198417 2585 ntBASIC13.11□□□□□ -0.31
Vps28Q9D1C8 Set-202ENSMUST00000102866 2824 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
Vps28Q9D1C8 Dgcr8-202ENSMUST00000115633 4522 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
Vps28Q9D1C8 Proser3-202ENSMUST00000108165 2466 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Vps28Q9D1C8 Proser3-206ENSMUST00000215288 2465 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
Vps28Q9D1C8 Vps29-208ENSMUST00000155671 2716 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
Vps28Q9D1C8 Nr2f1-203ENSMUST00000127137 991 ntTSL 5 BASIC13.11□□□□□ -0.31
Vps28Q9D1C8 Gm7809-201ENSMUST00000153199 742 ntBASIC13.11□□□□□ -0.31
Vps28Q9D1C8 Nudt17-202ENSMUST00000171249 1110 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Vps28Q9D1C8 Gm22121-201ENSMUST00000175148 54 ntBASIC13.11□□□□□ -0.31
Vps28Q9D1C8 Hmgcll1-207ENSMUST00000183979 1136 ntTSL 5 BASIC13.11□□□□□ -0.31
Vps28Q9D1C8 2010310C07Rik-202ENSMUST00000190889 842 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 47.1 ms