Protein–RNA interactions for Protein: Q6PFD9

Nup98, Nuclear pore complex protein Nup98-Nup96, mousemouse

Known RBP Predictions only

Length 1,816 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup98Q6PFD9 Gm26635-201ENSMUST00000181077 3199 ntTSL 5 BASIC14.82□□□□□ -0.04
Nup98Q6PFD9 Rab15-201ENSMUST00000021459 3158 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Nup98Q6PFD9 Gm45266-201ENSMUST00000210111 2173 ntBASIC14.82□□□□□ -0.04
Nup98Q6PFD9 5033406O09Rik-201ENSMUST00000221314 1662 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Nup98Q6PFD9 Zp1-201ENSMUST00000025641 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Nup98Q6PFD9 Shpk-201ENSMUST00000006105 2808 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Nup98Q6PFD9 Bin3-201ENSMUST00000022680 1767 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Nup98Q6PFD9 Adam15-204ENSMUST00000107448 2893 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Nup98Q6PFD9 Nlrp6-204ENSMUST00000184560 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Nup98Q6PFD9 Tnnt3-206ENSMUST00000105944 753 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Nup98Q6PFD9 Tnnt3-210ENSMUST00000105948 753 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Nup98Q6PFD9 Tnnt3-212ENSMUST00000105950 1037 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Nup98Q6PFD9 Tnnt3-224ENSMUST00000169299 1013 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Nup98Q6PFD9 Tnnt3-226ENSMUST00000180152 1067 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Nup98Q6PFD9 Creb1-209ENSMUST00000190348 1260 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Nup98Q6PFD9 Gm44100-201ENSMUST00000204329 436 ntBASIC14.82□□□□□ -0.04
Nup98Q6PFD9 Pdzd9-203ENSMUST00000208635 1238 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Nup98Q6PFD9 Gm45799-208ENSMUST00000211054 490 ntAPPRIS P2 TSL 3 BASIC14.82□□□□□ -0.04
Nup98Q6PFD9 Gm45770-201ENSMUST00000212105 616 ntBASIC14.82□□□□□ -0.04
Nup98Q6PFD9 Tmem260-201ENSMUST00000111735 5485 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
Nup98Q6PFD9 Snrpn-201ENSMUST00000059305 1932 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Nup98Q6PFD9 Ubtf-203ENSMUST00000107115 3199 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Nup98Q6PFD9 Mthfsd-210ENSMUST00000139782 1366 ntTSL 5 BASIC14.82□□□□□ -0.04
Nup98Q6PFD9 6030443J06Rik-202ENSMUST00000181374 1353 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Nup98Q6PFD9 Prss23-201ENSMUST00000041761 3228 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Nup98Q6PFD9 Ska1-202ENSMUST00000177604 2605 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Nup98Q6PFD9 Spg20-202ENSMUST00000107971 3567 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Nup98Q6PFD9 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Nup98Q6PFD9 Pggt1b-201ENSMUST00000025354 2736 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Nup98Q6PFD9 Kcnip4-207ENSMUST00000176191 2116 ntTSL 5 BASIC14.81□□□□□ -0.04
Nup98Q6PFD9 Gm18227-201ENSMUST00000211082 1468 ntBASIC14.81□□□□□ -0.04
Nup98Q6PFD9 Ddx10-201ENSMUST00000065630 3128 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Nup98Q6PFD9 Atp6ap1-202ENSMUST00000114171 2157 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Nup98Q6PFD9 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Nup98Q6PFD9 Smarcb1-202ENSMUST00000121304 1622 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Nup98Q6PFD9 Gm14190-201ENSMUST00000105073 153 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
Nup98Q6PFD9 Tm2d3-203ENSMUST00000107495 1003 ntAPPRIS P4 TSL 5 BASIC14.81□□□□□ -0.04
Nup98Q6PFD9 Gm13944-201ENSMUST00000126572 721 ntTSL 2 BASIC14.81□□□□□ -0.04
Nup98Q6PFD9 Gm12298-201ENSMUST00000126999 731 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Nup98Q6PFD9 Prdx5-203ENSMUST00000149261 755 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
Nup98Q6PFD9 Sh2d6-203ENSMUST00000159877 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Nup98Q6PFD9 Sh2d6-206ENSMUST00000162561 1251 ntAPPRIS P5 TSL 1 (best) BASIC14.81□□□□□ -0.04
Nup98Q6PFD9 Omt2a-203ENSMUST00000166056 1167 ntAPPRIS P4 TSL 1 (best) BASIC14.81□□□□□ -0.04
Nup98Q6PFD9 9330159M07Rik-202ENSMUST00000180783 1044 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Nup98Q6PFD9 Dleu2-205ENSMUST00000182325 463 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Nup98Q6PFD9 Dleu2-212ENSMUST00000183079 535 ntTSL 3 BASIC14.81□□□□□ -0.04
Nup98Q6PFD9 Gm37986-201ENSMUST00000193285 383 ntBASIC14.81□□□□□ -0.04
Nup98Q6PFD9 Gm8285-201ENSMUST00000208293 759 ntBASIC14.81□□□□□ -0.04
Nup98Q6PFD9 Gm44934-201ENSMUST00000208941 238 ntTSL 5 BASIC14.81□□□□□ -0.04
Nup98Q6PFD9 Gm807-202ENSMUST00000224929 408 ntBASIC14.81□□□□□ -0.04
Nup98Q6PFD9 Gm6781-201ENSMUST00000038304 1242 ntBASIC14.81□□□□□ -0.04
Nup98Q6PFD9 Wfdc21-201ENSMUST00000070832 434 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Nup98Q6PFD9 Cox5a-201ENSMUST00000000090 645 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Nup98Q6PFD9 Mef2d-204ENSMUST00000119251 3488 ntTSL 5 BASIC14.81□□□□□ -0.04
Nup98Q6PFD9 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
Nup98Q6PFD9 Ints5-201ENSMUST00000096249 3294 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Nup98Q6PFD9 Pkib-203ENSMUST00000095668 3311 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Nup98Q6PFD9 Pax6-202ENSMUST00000090397 3069 ntAPPRIS ALT1 TSL 5 BASIC14.81□□□□□ -0.04
Nup98Q6PFD9 Mlh1-201ENSMUST00000035079 2754 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Nup98Q6PFD9 Rtbdn-201ENSMUST00000067472 1908 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Nup98Q6PFD9 Duoxa1-202ENSMUST00000110537 1506 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Nup98Q6PFD9 Naa40-201ENSMUST00000025675 3275 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Nup98Q6PFD9 4930588K23Rik-201ENSMUST00000156827 1963 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Nup98Q6PFD9 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Nup98Q6PFD9 Zfp369-203ENSMUST00000130799 1580 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Nup98Q6PFD9 Zkscan3-204ENSMUST00000117721 5788 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Nup98Q6PFD9 Ppp2r2c-201ENSMUST00000031003 4088 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Nup98Q6PFD9 Gm14243-201ENSMUST00000131401 2172 ntTSL 2 BASIC14.8□□□□□ -0.04
Nup98Q6PFD9 Cnih4-204ENSMUST00000134115 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Nup98Q6PFD9 Cdk2ap1-204ENSMUST00000111474 1286 ntAPPRIS ALT1 TSL 2 BASIC14.8□□□□□ -0.04
Nup98Q6PFD9 Gm11450-201ENSMUST00000121144 333 ntBASIC14.8□□□□□ -0.04
Nup98Q6PFD9 1700001G11Rik-203ENSMUST00000153646 764 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Nup98Q6PFD9 Tmem40-205ENSMUST00000166254 811 ntAPPRIS P3 TSL 5 BASIC14.8□□□□□ -0.04
Nup98Q6PFD9 1700121N20Rik-201ENSMUST00000167922 1027 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Nup98Q6PFD9 Gm27184-201ENSMUST00000185095 607 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Nup98Q6PFD9 Gm32352-201ENSMUST00000212465 688 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Nup98Q6PFD9 Gm32635-201ENSMUST00000221493 1162 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Nup98Q6PFD9 Spcs1-203ENSMUST00000226374 592 ntBASIC14.8□□□□□ -0.04
Nup98Q6PFD9 Ptbp2-201ENSMUST00000029780 3364 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
Nup98Q6PFD9 Kifc3-202ENSMUST00000169353 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Nup98Q6PFD9 Gm4735-201ENSMUST00000138679 1302 ntBASIC14.8□□□□□ -0.04
Nup98Q6PFD9 Gm5855-201ENSMUST00000200240 1305 ntBASIC14.8□□□□□ -0.04
Nup98Q6PFD9 Rnf10-203ENSMUST00000112097 3476 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Nup98Q6PFD9 Gm8038-201ENSMUST00000164674 2044 ntBASIC14.8□□□□□ -0.04
Nup98Q6PFD9 AC163354.1-205ENSMUST00000223262 1511 ntTSL 5 BASIC14.8□□□□□ -0.04
Nup98Q6PFD9 Pex2-206ENSMUST00000195855 1587 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Nup98Q6PFD9 Clstn2-202ENSMUST00000162295 4174 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
Nup98Q6PFD9 Fam227a-204ENSMUST00000187519 2283 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Nup98Q6PFD9 Asb10-201ENSMUST00000048302 2327 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Nup98Q6PFD9 Hnrnpa2b1-203ENSMUST00000114459 1728 ntAPPRIS ALT1 TSL 5 BASIC14.8□□□□□ -0.04
Nup98Q6PFD9 Rpn1-201ENSMUST00000032143 3633 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Nup98Q6PFD9 Osbpl8-201ENSMUST00000095310 3622 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
Nup98Q6PFD9 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Nup98Q6PFD9 Gm20535-201ENSMUST00000173157 1268 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Nup98Q6PFD9 Nkx2-2os-202ENSMUST00000184407 458 ntBASIC14.8□□□□□ -0.04
Nup98Q6PFD9 8030455M16Rik-201ENSMUST00000213014 902 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Nup98Q6PFD9 Cct2-206ENSMUST00000219573 637 ntTSL 3 BASIC14.8□□□□□ -0.04
Nup98Q6PFD9 AC133602.1-201ENSMUST00000227510 509 ntBASIC14.8□□□□□ -0.04
Nup98Q6PFD9 Mrpl41-201ENSMUST00000045604 776 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Nup98Q6PFD9 Mill2-201ENSMUST00000072386 1121 ntAPPRIS P4 TSL 1 (best) BASIC14.8□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 51.7 ms