Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Lin28a-201ENSMUST00000051674 3505 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim27Q62158 Npr1-201ENSMUST00000029540 4066 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim27Q62158 Zbtb33-201ENSMUST00000049740 5122 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim27Q62158 Nacc1-201ENSMUST00000001975 4300 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim27Q62158 Coasy-202ENSMUST00000107308 2386 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim27Q62158 Cox19-201ENSMUST00000049630 2461 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim27Q62158 Bcl6-201ENSMUST00000023151 3525 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim27Q62158 Gm12384-201ENSMUST00000119228 919 ntBASIC15.69■□□□□ 0.1
Trim27Q62158 Gm13829-201ENSMUST00000119600 138 ntBASIC15.69■□□□□ 0.1
Trim27Q62158 Gm11964-201ENSMUST00000120982 444 ntBASIC15.69■□□□□ 0.1
Trim27Q62158 Sumo3-206ENSMUST00000141228 772 ntTSL 3 BASIC15.69■□□□□ 0.1
Trim27Q62158 Dgcr6-203ENSMUST00000143343 1280 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Trim27Q62158 Gm14209-201ENSMUST00000154946 462 ntTSL 5 BASIC15.69■□□□□ 0.1
Trim27Q62158 Gm2639-201ENSMUST00000156881 1297 ntBASIC15.69■□□□□ 0.1
Trim27Q62158 Pfdn6-205ENSMUST00000174426 396 ntTSL 2 BASIC15.69■□□□□ 0.1
Trim27Q62158 Pced1c-ps-201ENSMUST00000187740 751 ntBASIC15.69■□□□□ 0.1
Trim27Q62158 Gm4935-201ENSMUST00000221316 1198 ntBASIC15.69■□□□□ 0.1
Trim27Q62158 Chchd1-201ENSMUST00000071215 616 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim27Q62158 Snora73a-201ENSMUST00000082453 205 ntBASIC15.69■□□□□ 0.1
Trim27Q62158 Cdc26-201ENSMUST00000084525 819 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim27Q62158 Gm17080-201ENSMUST00000087588 811 ntTSL 5 BASIC15.69■□□□□ 0.1
Trim27Q62158 Plekhg6-201ENSMUST00000042647 3299 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim27Q62158 Cdkl2-204ENSMUST00000113143 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim27Q62158 Map4k1-203ENSMUST00000208227 2720 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Trim27Q62158 Map4k1-201ENSMUST00000085835 2724 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim27Q62158 Them4-201ENSMUST00000049822 1781 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim27Q62158 Pnma3-201ENSMUST00000060418 3405 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
Trim27Q62158 Ivns1abp-201ENSMUST00000023918 3511 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim27Q62158 Adck1-202ENSMUST00000166940 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim27Q62158 Zyg11a-203ENSMUST00000223127 2283 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
Trim27Q62158 Srms-201ENSMUST00000016498 2562 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim27Q62158 Sfmbt1-206ENSMUST00000228006 3299 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
Trim27Q62158 Scube2-201ENSMUST00000007423 3571 ntTSL 2 BASIC15.69■□□□□ 0.1
Trim27Q62158 Treh-202ENSMUST00000071219 1927 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Trim27Q62158 Lrrc29-203ENSMUST00000210412 2304 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
Trim27Q62158 Cyb5rl-203ENSMUST00000106758 2516 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
Trim27Q62158 Kdm2b-204ENSMUST00000118027 5062 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
Trim27Q62158 Ptch2-201ENSMUST00000030443 4382 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim27Q62158 Kcnn2-201ENSMUST00000066890 3682 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
Trim27Q62158 AC122228.1-201ENSMUST00000223113 2057 ntTSL 5 BASIC15.68■□□□□ 0.1
Trim27Q62158 Spert-202ENSMUST00000164082 1560 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
Trim27Q62158 Napsa-201ENSMUST00000002274 1560 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim27Q62158 Tmem200a-201ENSMUST00000066049 4115 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim27Q62158 Kif21b-201ENSMUST00000075164 9115 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
Trim27Q62158 Trav4-2-201ENSMUST00000103637 370 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
Trim27Q62158 Gm23931-201ENSMUST00000103842 109 ntBASIC15.68■□□□□ 0.1
Trim27Q62158 Apoc1-202ENSMUST00000108451 532 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim27Q62158 Nr2f1-203ENSMUST00000127137 991 ntTSL 5 BASIC15.68■□□□□ 0.1
Trim27Q62158 Gm25927-201ENSMUST00000175058 117 ntBASIC15.68■□□□□ 0.1
Trim27Q62158 Asgr1-201ENSMUST00000018699 1259 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim27Q62158 Gm45784-201ENSMUST00000188360 142 ntBASIC15.68■□□□□ 0.1
Trim27Q62158 St13-201ENSMUST00000023039 1089 ntTSL 5 BASIC15.68■□□□□ 0.1
Trim27Q62158 Treml1-201ENSMUST00000024792 1235 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim27Q62158 Sh3bgrl3-201ENSMUST00000030651 743 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim27Q62158 1500011B03Rik-201ENSMUST00000061251 579 ntAPPRIS P5 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim27Q62158 Rnf10-202ENSMUST00000112096 3112 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim27Q62158 Clpx-202ENSMUST00000113824 2809 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Trim27Q62158 Tmem104-202ENSMUST00000100235 4561 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim27Q62158 Tmem104-201ENSMUST00000061450 4564 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim27Q62158 Arcn1-201ENSMUST00000034607 4072 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim27Q62158 Itgav-201ENSMUST00000028499 7054 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim27Q62158 Esrp1-203ENSMUST00000108311 3864 ntTSL 5 BASIC15.68■□□□□ 0.1
Trim27Q62158 Cacnb2-202ENSMUST00000114719 2117 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim27Q62158 Etl4-208ENSMUST00000114614 5898 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim27Q62158 Dpysl5-203ENSMUST00000114729 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim27Q62158 Ccng1-201ENSMUST00000020576 3512 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim27Q62158 4930550C17Rik-201ENSMUST00000181629 1411 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Trim27Q62158 Strada-201ENSMUST00000007444 2099 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim27Q62158 Nkd2-201ENSMUST00000022051 4016 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim27Q62158 Zfp961-202ENSMUST00000131237 2689 ntAPPRIS ALT2 TSL 3 BASIC15.67■□□□□ 0.1
Trim27Q62158 Slco4a1-202ENSMUST00000038259 3010 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim27Q62158 Zfp108-201ENSMUST00000072713 1929 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Trim27Q62158 1700042G07Rik-201ENSMUST00000106492 385 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim27Q62158 Fzr1-202ENSMUST00000118812 1215 ntTSL 5 BASIC15.67■□□□□ 0.1
Trim27Q62158 Meg3-208ENSMUST00000143847 706 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Trim27Q62158 Gm16191-202ENSMUST00000148464 484 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Trim27Q62158 Gm7809-201ENSMUST00000153199 742 ntBASIC15.67■□□□□ 0.1
Trim27Q62158 Gm15494-202ENSMUST00000171665 451 ntTSL 2 BASIC15.67■□□□□ 0.1
Trim27Q62158 Mt3-203ENSMUST00000211930 477 ntTSL 2 BASIC15.67■□□□□ 0.1
Trim27Q62158 1700023F06Rik-201ENSMUST00000021323 1199 ntAPPRIS P2 TSL 5 BASIC15.67■□□□□ 0.1
Trim27Q62158 Lce3a-201ENSMUST00000067318 549 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim27Q62158 n-R5s195-201ENSMUST00000082891 119 ntBASIC15.67■□□□□ 0.1
Trim27Q62158 Gm24526-201ENSMUST00000082921 158 ntBASIC15.67■□□□□ 0.1
Trim27Q62158 Cacnb4-201ENSMUST00000078324 8225 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Trim27Q62158 Atg7-212ENSMUST00000182902 2543 ntAPPRIS P3 TSL 2 BASIC15.67■□□□□ 0.1
Trim27Q62158 Dctn4-202ENSMUST00000223590 1530 ntBASIC15.67■□□□□ 0.1
Trim27Q62158 Gm9881-201ENSMUST00000068783 3205 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
Trim27Q62158 Ppp1r15a-201ENSMUST00000042105 2333 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim27Q62158 Mpzl2-201ENSMUST00000034600 3107 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Trim27Q62158 Chd4-203ENSMUST00000112392 6652 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Trim27Q62158 Mtm1-201ENSMUST00000025391 3286 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Trim27Q62158 Gm43579-201ENSMUST00000202387 1307 ntBASIC15.67■□□□□ 0.1
Trim27Q62158 Shc1-203ENSMUST00000107417 3079 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Trim27Q62158 Eif4enif1-213ENSMUST00000179770 3676 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim27Q62158 Rtbdn-201ENSMUST00000067472 1908 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim27Q62158 Ints3-202ENSMUST00000071488 4038 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim27Q62158 2610037D02Rik-201ENSMUST00000180852 2449 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Trim27Q62158 Gm37885-201ENSMUST00000192568 1391 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Trim27Q62158 Megf9-202ENSMUST00000107359 7924 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Trim27Q62158 Gm11425-201ENSMUST00000119608 498 ntBASIC15.66■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms