Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Tmem159-202ENSMUST00000118737 1395 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Limch1Q3UH68 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Limch1Q3UH68 Rhbdd2-201ENSMUST00000043707 4207 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Limch1Q3UH68 Hectd1-201ENSMUST00000042052 8988 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Limch1Q3UH68 Khdrbs2-205ENSMUST00000189878 3259 ntTSL 1 (best) BASIC15.07■□□□□ 0
Limch1Q3UH68 Wnt9b-201ENSMUST00000018630 4518 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Limch1Q3UH68 Gm14866-201ENSMUST00000149206 2118 ntTSL 2 BASIC15.07■□□□□ 0
Limch1Q3UH68 Ap3m2-201ENSMUST00000163739 3417 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Limch1Q3UH68 Hck-204ENSMUST00000191431 1575 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
Limch1Q3UH68 Tufm-202ENSMUST00000106392 1754 ntTSL 2 BASIC15.06■□□□□ 0
Limch1Q3UH68 Olfr1411-203ENSMUST00000216444 1901 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
Limch1Q3UH68 Nrp2-203ENSMUST00000075144 6723 ntTSL 1 (best) BASIC15.06■□□□□ 0
Limch1Q3UH68 Tepsin-201ENSMUST00000026442 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Limch1Q3UH68 Chst3-201ENSMUST00000068690 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Limch1Q3UH68 Gm22018-201ENSMUST00000104357 131 ntBASIC15.06■□□□□ 0
Limch1Q3UH68 Ins2-204ENSMUST00000105932 455 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Limch1Q3UH68 Gm12953-201ENSMUST00000138426 751 ntTSL 2 BASIC15.06■□□□□ 0
Limch1Q3UH68 Hoxb5os-202ENSMUST00000150698 596 ntTSL 1 (best) BASIC15.06■□□□□ 0
Limch1Q3UH68 Prss51-202ENSMUST00000165710 953 ntTSL 1 (best) BASIC15.06■□□□□ 0
Limch1Q3UH68 Hmgcll1-207ENSMUST00000183979 1136 ntTSL 5 BASIC15.06■□□□□ 0
Limch1Q3UH68 Mir8109-201ENSMUST00000184375 117 ntBASIC15.06■□□□□ 0
Limch1Q3UH68 Gm28693-202ENSMUST00000190758 331 ntBASIC15.06■□□□□ 0
Limch1Q3UH68 Gm38161-201ENSMUST00000195344 576 ntTSL 2 BASIC15.06■□□□□ 0
Limch1Q3UH68 Gm37008-201ENSMUST00000195712 319 ntBASIC15.06■□□□□ 0
Limch1Q3UH68 Gm45892-201ENSMUST00000212627 273 ntTSL 5 BASIC15.06■□□□□ 0
Limch1Q3UH68 Tpd52l1-205ENSMUST00000215515 857 ntTSL 2 BASIC15.06■□□□□ 0
Limch1Q3UH68 Ins2-201ENSMUST00000000220 478 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Limch1Q3UH68 AC133598.1-201ENSMUST00000224327 660 ntBASIC15.06■□□□□ 0
Limch1Q3UH68 Ier3-201ENSMUST00000003635 1131 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Limch1Q3UH68 Nkiras2-202ENSMUST00000051947 831 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Limch1Q3UH68 Rpl10-202ENSMUST00000074085 855 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Limch1Q3UH68 Rpl10-201ENSMUST00000008826 799 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Limch1Q3UH68 Olfr1209-201ENSMUST00000099809 933 ntAPPRIS P1 BASIC15.06■□□□□ 0
Limch1Q3UH68 Tceanc2-202ENSMUST00000057043 6431 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Limch1Q3UH68 Gm26635-201ENSMUST00000181077 3199 ntTSL 5 BASIC15.06■□□□□ 0
Limch1Q3UH68 Tars2-201ENSMUST00000029752 2400 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
Limch1Q3UH68 Ccnc-204ENSMUST00000120679 1453 ntTSL 1 (best) BASIC15.06■□□□□ 0
Limch1Q3UH68 Mettl17-206ENSMUST00000164902 1461 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
Limch1Q3UH68 C77080-203ENSMUST00000106051 5049 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Limch1Q3UH68 C77080-202ENSMUST00000097873 5033 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Limch1Q3UH68 Ncoa7-201ENSMUST00000068567 5105 ntAPPRIS P3 TSL 5 BASIC15.06■□□□□ 0
Limch1Q3UH68 Tmem39a-201ENSMUST00000002924 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Limch1Q3UH68 Pxdn-202ENSMUST00000122328 6614 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Limch1Q3UH68 Frzb-201ENSMUST00000028389 3149 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Limch1Q3UH68 Gm26593-201ENSMUST00000181848 1970 ntTSL 5 BASIC15.05■□□□□ 0
Limch1Q3UH68 Tspan1-201ENSMUST00000030465 1985 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Limch1Q3UH68 Cab39-201ENSMUST00000097666 2369 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ 0
Limch1Q3UH68 Trpv4-204ENSMUST00000112222 2475 ntTSL 5 BASIC15.05■□□□□ 0
Limch1Q3UH68 Aph1a-201ENSMUST00000015894 2863 ntTSL 1 (best) BASIC15.05■□□□□ 0
Limch1Q3UH68 Pgpep1-201ENSMUST00000070173 4883 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Limch1Q3UH68 Ccdc187-201ENSMUST00000057224 3148 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
Limch1Q3UH68 Celsr1-201ENSMUST00000016172 10879 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Limch1Q3UH68 Ppih-203ENSMUST00000106318 800 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Limch1Q3UH68 Mapkapk5-205ENSMUST00000111786 975 ntTSL 1 (best) BASIC15.05■□□□□ -0
Limch1Q3UH68 Tmem219-203ENSMUST00000120007 1087 ntTSL 1 (best) BASIC15.05■□□□□ -0
Limch1Q3UH68 Mad2l1bp-201ENSMUST00000171172 1269 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Limch1Q3UH68 Gm26728-201ENSMUST00000185268 595 ntTSL 1 (best) BASIC15.05■□□□□ -0
Limch1Q3UH68 2900093K20Rik-201ENSMUST00000190930 567 ntBASIC15.05■□□□□ -0
Limch1Q3UH68 Gm36264-202ENSMUST00000221989 1142 ntTSL 5 BASIC15.05■□□□□ -0
Limch1Q3UH68 AC154305.4-201ENSMUST00000224520 614 ntBASIC15.05■□□□□ -0
Limch1Q3UH68 Tspan8-201ENSMUST00000035563 1244 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Limch1Q3UH68 Art3-204ENSMUST00000119587 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
Limch1Q3UH68 Grip1-212ENSMUST00000147356 4145 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
Limch1Q3UH68 Prrc2a-201ENSMUST00000025253 6888 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Limch1Q3UH68 Uchl1os-201ENSMUST00000152002 1685 ntTSL 1 (best) BASIC15.05■□□□□ -0
Limch1Q3UH68 Npc1-201ENSMUST00000025279 5224 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Limch1Q3UH68 Ncor2-205ENSMUST00000111398 8808 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
Limch1Q3UH68 Rnf214-205ENSMUST00000160699 2287 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
Limch1Q3UH68 AC125108.1-201ENSMUST00000218986 2330 ntBASIC15.05■□□□□ -0
Limch1Q3UH68 Rai1-202ENSMUST00000090806 7217 ntTSL 1 (best) BASIC15.05■□□□□ -0
Limch1Q3UH68 Nr2c2-201ENSMUST00000113460 7647 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
Limch1Q3UH68 Olfr533-206ENSMUST00000217179 2825 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
Limch1Q3UH68 Cux2-202ENSMUST00000111752 8784 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Limch1Q3UH68 Kcnc2-204ENSMUST00000219301 2944 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
Limch1Q3UH68 Mkrn1-201ENSMUST00000031985 3046 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
Limch1Q3UH68 Pphln1-203ENSMUST00000109256 3759 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Limch1Q3UH68 Tecpr1-201ENSMUST00000085701 5106 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Limch1Q3UH68 Ret-201ENSMUST00000032201 5456 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
Limch1Q3UH68 Phactr3-205ENSMUST00000108917 4858 ntTSL 1 (best) BASIC15.04■□□□□ -0
Limch1Q3UH68 Bcl7a-201ENSMUST00000031391 4718 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Limch1Q3UH68 Mrps30-201ENSMUST00000022245 3319 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Limch1Q3UH68 Ctps2-206ENSMUST00000112303 3289 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Limch1Q3UH68 Pex19-201ENSMUST00000075895 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Limch1Q3UH68 Phactr2-201ENSMUST00000079698 1934 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
Limch1Q3UH68 Igsf23-204ENSMUST00000208974 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Limch1Q3UH68 Tollip-204ENSMUST00000151890 1753 ntTSL 1 (best) BASIC15.04■□□□□ -0
Limch1Q3UH68 Tufm-201ENSMUST00000098048 1679 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Limch1Q3UH68 Fetub-201ENSMUST00000023587 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Limch1Q3UH68 Neurog3-201ENSMUST00000050103 1540 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Limch1Q3UH68 Gpr18-201ENSMUST00000055475 1498 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Limch1Q3UH68 Actc1-201ENSMUST00000090269 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Limch1Q3UH68 Fgfr3-209ENSMUST00000164207 4150 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Limch1Q3UH68 Allc-202ENSMUST00000110917 1384 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Limch1Q3UH68 Gm38049-201ENSMUST00000195698 1372 ntBASIC15.04■□□□□ -0
Limch1Q3UH68 Krt40-201ENSMUST00000074253 1320 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Limch1Q3UH68 Gm11618-201ENSMUST00000117946 267 ntBASIC15.04■□□□□ -0
Limch1Q3UH68 Gm12329-201ENSMUST00000120829 1007 ntBASIC15.04■□□□□ -0
Limch1Q3UH68 Mpc1-202ENSMUST00000124023 555 ntTSL 2 BASIC15.04■□□□□ -0
Limch1Q3UH68 6330418K02Rik-201ENSMUST00000124298 743 ntTSL 1 (best) BASIC15.04■□□□□ -0
Limch1Q3UH68 Gm20521-201ENSMUST00000134077 1245 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
Retrieved 100 of 76,532 protein–RNA pairs in 40 ms