Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Rpn1-201ENSMUST00000032143 3633 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Cux1P53564 Ckm-203ENSMUST00000208710 2742 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Cux1P53564 Ripk4-201ENSMUST00000019386 3541 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Cux1P53564 Eno3-202ENSMUST00000108548 1564 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
Cux1P53564 Scamp1-201ENSMUST00000022197 4259 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Cux1P53564 Trp53rkb-203ENSMUST00000151826 4426 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Cux1P53564 Gm9072-201ENSMUST00000218390 1514 ntBASIC19.35■□□□□ 0.69
Cux1P53564 Trp53i11-202ENSMUST00000111266 2703 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Cux1P53564 Mapkapk5-203ENSMUST00000111782 969 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Cux1P53564 Avpr2-203ENSMUST00000114395 936 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Cux1P53564 Gm7722-201ENSMUST00000120646 741 ntBASIC19.35■□□□□ 0.69
Cux1P53564 Gm14965-201ENSMUST00000124118 565 ntTSL 2 BASIC19.35■□□□□ 0.69
Cux1P53564 Trmt112-204ENSMUST00000174786 646 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Cux1P53564 Gm3332-201ENSMUST00000189337 928 ntBASIC19.35■□□□□ 0.69
Cux1P53564 1700030I03Rik-201ENSMUST00000192978 942 ntBASIC19.35■□□□□ 0.69
Cux1P53564 3110080O07Rik-201ENSMUST00000193469 1021 ntBASIC19.35■□□□□ 0.69
Cux1P53564 Gm43050-202ENSMUST00000201152 651 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Cux1P53564 Gm45799-208ENSMUST00000211054 490 ntAPPRIS P2 TSL 3 BASIC19.35■□□□□ 0.69
Cux1P53564 Mt3-202ENSMUST00000211915 440 ntTSL 3 BASIC19.35■□□□□ 0.69
Cux1P53564 Gm45909-201ENSMUST00000212413 1031 ntBASIC19.35■□□□□ 0.69
Cux1P53564 Gm807-202ENSMUST00000224929 408 ntBASIC19.35■□□□□ 0.69
Cux1P53564 Plp2-201ENSMUST00000033486 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Cux1P53564 Immp1l-201ENSMUST00000037499 955 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Cux1P53564 Emp3-201ENSMUST00000038876 736 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Cux1P53564 Sstr2-201ENSMUST00000067591 1041 ntTSL 2 BASIC19.35■□□□□ 0.69
Cux1P53564 Gm26035-201ENSMUST00000083065 308 ntBASIC19.35■□□□□ 0.69
Cux1P53564 Gm26519-201ENSMUST00000181193 2249 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Cux1P53564 Lrp6-201ENSMUST00000032322 9368 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Cux1P53564 Sgpl1-202ENSMUST00000122259 4102 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Cux1P53564 Dnm1-214ENSMUST00000201433 3146 ntAPPRIS ALT1 TSL 5 BASIC19.34■□□□□ 0.69
Cux1P53564 Tgif2-202ENSMUST00000081335 2900 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Cux1P53564 Syngap1-202ENSMUST00000177932 3927 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
Cux1P53564 Gcom1-201ENSMUST00000163998 1726 ntAPPRIS P5 TSL 5 BASIC19.34■□□□□ 0.69
Cux1P53564 Lrriq4-201ENSMUST00000108265 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Cux1P53564 Taf6-203ENSMUST00000110937 2093 ntTSL 5 BASIC19.34■□□□□ 0.69
Cux1P53564 Eme1-201ENSMUST00000039949 2444 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Cux1P53564 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Cux1P53564 Nepn-201ENSMUST00000067085 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Cux1P53564 Ick-203ENSMUST00000117330 2698 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
Cux1P53564 Rwdd3-205ENSMUST00000106467 1158 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Cux1P53564 Lgals4-207ENSMUST00000208971 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Cux1P53564 9530020I12Rik-203ENSMUST00000219371 819 ntTSL 3 BASIC19.34■□□□□ 0.69
Cux1P53564 4930578I06Rik-201ENSMUST00000022532 1033 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Cux1P53564 Ngdn-201ENSMUST00000022815 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Cux1P53564 Recql-201ENSMUST00000032370 2112 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Cux1P53564 Nceh1-202ENSMUST00000091284 830 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Cux1P53564 Rdh16f2-201ENSMUST00000092058 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Cux1P53564 Zfp1-203ENSMUST00000212072 1930 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Cux1P53564 Chfr-202ENSMUST00000112519 3159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Cux1P53564 Hp1bp3-204ENSMUST00000105826 3348 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
Cux1P53564 Gm26525-201ENSMUST00000180666 3616 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Cux1P53564 Dnajb1-201ENSMUST00000005620 2996 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Cux1P53564 Strada-202ENSMUST00000103072 1517 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Cux1P53564 Rab11a-208ENSMUST00000172298 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Cux1P53564 B430119L08Rik-201ENSMUST00000130054 1994 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Cux1P53564 Mocs1-204ENSMUST00000173033 2588 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Cux1P53564 Pigv-201ENSMUST00000062118 3979 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Cux1P53564 Foxo4-201ENSMUST00000062000 3162 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Cux1P53564 Gm3052-202ENSMUST00000188254 2224 ntBASIC19.33■□□□□ 0.69
Cux1P53564 Kifc1-204ENSMUST00000173492 2350 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.69
Cux1P53564 Zhx1-201ENSMUST00000070143 4764 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Cux1P53564 Gm10961-201ENSMUST00000106703 144 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
Cux1P53564 Arntl2-203ENSMUST00000111638 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Cux1P53564 Cspp1-204ENSMUST00000119714 1268 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Cux1P53564 Gm12029-201ENSMUST00000120073 832 ntBASIC19.33■□□□□ 0.68
Cux1P53564 Ssty2-201ENSMUST00000179136 684 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
Cux1P53564 Gm9918-201ENSMUST00000181801 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Cux1P53564 Ssty2-202ENSMUST00000190565 1216 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Cux1P53564 AC122876.1-201ENSMUST00000217619 825 ntBASIC19.33■□□□□ 0.68
Cux1P53564 Arntl2-201ENSMUST00000080530 1740 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
Cux1P53564 Ablim1-209ENSMUST00000111546 2267 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
Cux1P53564 Terb2-201ENSMUST00000028661 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Cux1P53564 Trim52-201ENSMUST00000022708 3075 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
Cux1P53564 Kars-201ENSMUST00000034426 2008 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
Cux1P53564 Slmap-212ENSMUST00000139075 4508 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Cux1P53564 Mettl8-202ENSMUST00000100037 2254 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Cux1P53564 Fam43a-201ENSMUST00000059078 3075 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
Cux1P53564 Gm36855-203ENSMUST00000216660 1406 ntTSL 5 BASIC19.32■□□□□ 0.68
Cux1P53564 Olfr1420-201ENSMUST00000072784 1444 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
Cux1P53564 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
Cux1P53564 Kcnq1-201ENSMUST00000009689 3029 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Cux1P53564 Ifitm10-203ENSMUST00000105988 824 ntAPPRIS P4 TSL 2 BASIC19.32■□□□□ 0.68
Cux1P53564 Gm17231-202ENSMUST00000165858 663 ntTSL 5 BASIC19.32■□□□□ 0.68
Cux1P53564 Gm17099-201ENSMUST00000166780 412 ntTSL 3 BASIC19.32■□□□□ 0.68
Cux1P53564 Gm45285-201ENSMUST00000210418 749 ntTSL 3 BASIC19.32■□□□□ 0.68
Cux1P53564 CT571245.2-201ENSMUST00000218421 305 ntBASIC19.32■□□□□ 0.68
Cux1P53564 AC158523.3-201ENSMUST00000220664 864 ntTSL 5 BASIC19.32■□□□□ 0.68
Cux1P53564 Ly9-202ENSMUST00000068878 2488 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
Cux1P53564 Loxl1-201ENSMUST00000061799 3297 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Cux1P53564 Safb2-201ENSMUST00000075510 3277 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Cux1P53564 Sv2c-203ENSMUST00000182289 2197 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Cux1P53564 Cdc20b-201ENSMUST00000109244 1620 ntAPPRIS P2 TSL 5 BASIC19.32■□□□□ 0.68
Cux1P53564 Gm6034-201ENSMUST00000097331 1633 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Cux1P53564 Arhgef18-201ENSMUST00000004684 5271 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Cux1P53564 Rreb1-202ENSMUST00000110237 4617 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Cux1P53564 Hid1-201ENSMUST00000044152 3236 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Cux1P53564 Gm9387-201ENSMUST00000098624 1320 ntBASIC19.32■□□□□ 0.68
Cux1P53564 Csrnp3-202ENSMUST00000112394 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Cux1P53564 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Cux1P53564 Ighv1-61-201ENSMUST00000103531 351 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 35.8 ms