Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Mirg-202ENSMUST00000181543 1300 ntTSL 5 BASIC13.83□□□□□ -0.2
RaraP11416 Krt40-201ENSMUST00000074253 1320 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RaraP11416 Rasa3-201ENSMUST00000117551 4404 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RaraP11416 Gm14608-201ENSMUST00000120030 1553 ntBASIC13.83□□□□□ -0.2
RaraP11416 9230110C19Rik-201ENSMUST00000065291 1592 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RaraP11416 Chrnd-201ENSMUST00000073252 2925 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RaraP11416 Krt17-201ENSMUST00000080893 1551 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RaraP11416 Cacna1g-207ENSMUST00000107789 8383 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
RaraP11416 Colgalt2-201ENSMUST00000044311 4093 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RaraP11416 Kcnn1-204ENSMUST00000212086 2964 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
RaraP11416 Limd2-201ENSMUST00000045923 2950 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RaraP11416 Rsph3b-201ENSMUST00000024572 1614 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RaraP11416 Dtx1-201ENSMUST00000031607 4035 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RaraP11416 Nr2c2-202ENSMUST00000113463 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RaraP11416 Igf1-203ENSMUST00000105300 1673 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
RaraP11416 Mdga2-201ENSMUST00000037181 9833 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RaraP11416 Cdc37l1-207ENSMUST00000225210 4163 ntAPPRIS ALT2 BASIC13.82□□□□□ -0.2
RaraP11416 Ppm1b-204ENSMUST00000112307 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
RaraP11416 Dnajb4-201ENSMUST00000029669 1497 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
RaraP11416 Eef1akmt3-201ENSMUST00000116231 2719 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
RaraP11416 Grid1-201ENSMUST00000043349 5720 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RaraP11416 Trmt1-204ENSMUST00000109768 2044 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
RaraP11416 Zfp236-201ENSMUST00000171071 9626 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
RaraP11416 Gm13112-201ENSMUST00000138795 1258 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
RaraP11416 P2rx4-204ENSMUST00000139631 1030 ntTSL 5 BASIC13.82□□□□□ -0.2
RaraP11416 P2rx4-206ENSMUST00000142664 1111 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
RaraP11416 Pmepa1os-201ENSMUST00000150185 680 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
RaraP11416 Gm5866-201ENSMUST00000177881 973 ntBASIC13.82□□□□□ -0.2
RaraP11416 Gm26517-201ENSMUST00000181279 1172 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
RaraP11416 Gm27230-202ENSMUST00000184671 857 ntTSL 3 BASIC13.82□□□□□ -0.2
RaraP11416 Gm29152-201ENSMUST00000189284 325 ntTSL 5 BASIC13.82□□□□□ -0.2
RaraP11416 Cryaa-201ENSMUST00000019192 1176 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
RaraP11416 Gm38671-201ENSMUST00000200573 130 ntBASIC13.82□□□□□ -0.2
RaraP11416 Gm44124-201ENSMUST00000204159 472 ntBASIC13.82□□□□□ -0.2
RaraP11416 Gm34549-203ENSMUST00000208300 896 ntTSL 5 BASIC13.82□□□□□ -0.2
RaraP11416 Gm45484-201ENSMUST00000210310 1141 ntBASIC13.82□□□□□ -0.2
RaraP11416 Isca2-201ENSMUST00000021667 883 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RaraP11416 4921530L21Rik-202ENSMUST00000228913 1115 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
RaraP11416 Rhox2e-201ENSMUST00000072167 799 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
RaraP11416 Entpd4-206ENSMUST00000184973 3589 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RaraP11416 Entpd4b-204ENSMUST00000185072 3589 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RaraP11416 Csf1-202ENSMUST00000118593 3058 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
RaraP11416 Hook2-204ENSMUST00000210326 3080 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
RaraP11416 Gm43721-201ENSMUST00000199677 2313 ntBASIC13.82□□□□□ -0.2
RaraP11416 Mast1-202ENSMUST00000119820 2078 ntTSL 5 BASIC13.82□□□□□ -0.2
RaraP11416 Edc3-201ENSMUST00000043990 5708 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RaraP11416 Rara-207ENSMUST00000164748 3129 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RaraP11416 4921507P07Rik-201ENSMUST00000031852 2378 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RaraP11416 Gm2420-201ENSMUST00000119864 2149 ntBASIC13.82□□□□□ -0.2
RaraP11416 Pik3r1-201ENSMUST00000035532 2923 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
RaraP11416 Kalrn-210ENSMUST00000114964 2693 ntTSL 5 BASIC13.82□□□□□ -0.2
RaraP11416 Brf2-201ENSMUST00000033877 1899 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RaraP11416 2310035C23Rik-201ENSMUST00000039173 4328 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
RaraP11416 4933431E20Rik-209ENSMUST00000146337 1636 ntTSL 5 BASIC13.82□□□□□ -0.2
RaraP11416 Cdk5rap1-203ENSMUST00000109731 2160 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
RaraP11416 Gm37437-201ENSMUST00000194451 1937 ntBASIC13.82□□□□□ -0.2
RaraP11416 Gm18263-201ENSMUST00000220846 1928 ntBASIC13.82□□□□□ -0.2
RaraP11416 Bop1-201ENSMUST00000023217 2476 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RaraP11416 Zfp125-201ENSMUST00000079237 2488 ntBASIC13.82□□□□□ -0.2
RaraP11416 Acta1-201ENSMUST00000034453 1446 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RaraP11416 Car10-201ENSMUST00000042943 3293 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RaraP11416 Recql-201ENSMUST00000032370 2112 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
RaraP11416 Odf3-202ENSMUST00000106049 1509 ntTSL 5 BASIC13.81□□□□□ -0.2
RaraP11416 Cngb1-201ENSMUST00000093268 1512 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
RaraP11416 Zmat1-202ENSMUST00000113185 3378 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
RaraP11416 Slc25a40-201ENSMUST00000066921 2784 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RaraP11416 Nrf1-207ENSMUST00000115206 1879 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RaraP11416 Gm45684-201ENSMUST00000210244 1571 ntBASIC13.81□□□□□ -0.2
RaraP11416 Tgfbr2-201ENSMUST00000035014 3476 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RaraP11416 Smad4-202ENSMUST00000114939 2233 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RaraP11416 Rhox2f-201ENSMUST00000115173 799 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
RaraP11416 Akirin1-ps-201ENSMUST00000119676 458 ntBASIC13.81□□□□□ -0.2
RaraP11416 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC13.81□□□□□ -0.2
RaraP11416 Gm18018-201ENSMUST00000198273 408 ntBASIC13.81□□□□□ -0.2
RaraP11416 Kitl-204ENSMUST00000218200 564 ntTSL 5 BASIC13.81□□□□□ -0.2
RaraP11416 AC150560.1-201ENSMUST00000227731 1187 ntBASIC13.81□□□□□ -0.2
RaraP11416 Nelfcd-202ENSMUST00000109075 2279 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RaraP11416 1110002L01Rik-202ENSMUST00000168012 3569 ntTSL 2 BASIC13.81□□□□□ -0.2
RaraP11416 Gtf2ird1-202ENSMUST00000074114 3330 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
RaraP11416 Ext1-201ENSMUST00000077273 7663 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RaraP11416 4930423D22Rik-201ENSMUST00000221909 1674 ntBASIC13.81□□□□□ -0.2
RaraP11416 Il2rg-201ENSMUST00000033664 1670 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RaraP11416 Lef1-204ENSMUST00000106341 3357 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
RaraP11416 Lef1-202ENSMUST00000066849 3398 ntAPPRIS ALT1 TSL 5 BASIC13.81□□□□□ -0.2
RaraP11416 Etf1-201ENSMUST00000025218 3709 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RaraP11416 2610037D02Rik-201ENSMUST00000180852 2449 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
RaraP11416 Wnt7b-202ENSMUST00000109424 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RaraP11416 Sp3-202ENSMUST00000102689 4181 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
RaraP11416 Pgpep1-201ENSMUST00000070173 4883 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RaraP11416 Cecr2-202ENSMUST00000112686 9212 ntAPPRIS P2 TSL 5 BASIC13.81□□□□□ -0.2
RaraP11416 Stau1-203ENSMUST00000109236 2860 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
RaraP11416 Gm5780-201ENSMUST00000217774 1834 ntBASIC13.8□□□□□ -0.2
RaraP11416 Rbm39-217ENSMUST00000146297 2580 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RaraP11416 Gm42890-202ENSMUST00000167642 2566 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
RaraP11416 G2e3-201ENSMUST00000054308 6803 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
RaraP11416 Golim4-202ENSMUST00000117242 4551 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
RaraP11416 Vps4b-201ENSMUST00000094646 4633 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RaraP11416 Serpinb2-202ENSMUST00000064916 1996 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RaraP11416 Rubie-203ENSMUST00000227803 2430 ntBASIC13.8□□□□□ -0.2
RaraP11416 Bcar3-201ENSMUST00000029766 3311 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 73.1 ms