Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Stat1-211ENSMUST00000189347 2588 ntAPPRIS ALT1 TSL 5 BASIC12.22□□□□□ -0.45
Lire1P11260 Pak1-201ENSMUST00000033040 3065 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Lire1P11260 Cd72-201ENSMUST00000030179 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Lire1P11260 B3gntl1-201ENSMUST00000062654 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Lire1P11260 Abcg8-202ENSMUST00000170725 2415 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Lire1P11260 Gm17029-202ENSMUST00000146124 2899 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Lire1P11260 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Lire1P11260 Cabp4-201ENSMUST00000025761 1431 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Lire1P11260 2600006K01Rik-201ENSMUST00000047607 1406 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Lire1P11260 Oscar-202ENSMUST00000108645 1829 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Lire1P11260 Gm42690-201ENSMUST00000197921 1836 ntBASIC12.21□□□□□ -0.45
Lire1P11260 Oscar-201ENSMUST00000039507 1823 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
Lire1P11260 Dnmt3b-205ENSMUST00000103150 4070 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Lire1P11260 Nlrc3-203ENSMUST00000177551 5403 ntAPPRIS P1 TSL 2 BASIC12.21□□□□□ -0.45
Lire1P11260 Rnf17-201ENSMUST00000095793 5264 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Lire1P11260 Scube1-203ENSMUST00000076060 3913 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Lire1P11260 Gm26794-201ENSMUST00000180810 4312 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Lire1P11260 Cfap157-201ENSMUST00000102813 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Lire1P11260 Trav4-2-201ENSMUST00000103637 370 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
Lire1P11260 Rab1a-202ENSMUST00000109601 1200 ntTSL 5 BASIC12.21□□□□□ -0.45
Lire1P11260 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC12.21□□□□□ -0.45
Lire1P11260 Ifnar2-203ENSMUST00000117836 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Lire1P11260 Gm15240-201ENSMUST00000118156 720 ntBASIC12.21□□□□□ -0.45
Lire1P11260 Gm11814-201ENSMUST00000119515 929 ntBASIC12.21□□□□□ -0.45
Lire1P11260 Mthfsd-206ENSMUST00000133037 1060 ntTSL 5 BASIC12.21□□□□□ -0.45
Lire1P11260 Gm11592-201ENSMUST00000133160 637 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Lire1P11260 Gm14285-201ENSMUST00000146049 380 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Lire1P11260 Snora78-201ENSMUST00000158630 128 ntBASIC12.21□□□□□ -0.45
Lire1P11260 Dhrs2-202ENSMUST00000165432 849 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
Lire1P11260 B230217C12Rik-204ENSMUST00000170806 1118 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Lire1P11260 Naxd-205ENSMUST00000178721 1108 ntTSL 5 BASIC12.21□□□□□ -0.45
Lire1P11260 Rps19-ps13-201ENSMUST00000180504 441 ntBASIC12.21□□□□□ -0.45
Lire1P11260 Ccdc159-204ENSMUST00000216710 1126 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
Lire1P11260 Slc35d2-202ENSMUST00000220792 917 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Lire1P11260 AC131586.1-201ENSMUST00000228844 2964 ntBASIC12.21□□□□□ -0.45
Lire1P11260 Tmem54-202ENSMUST00000030577 988 ntAPPRIS ALT2 TSL 3 BASIC12.21□□□□□ -0.45
Lire1P11260 Iqcf4-201ENSMUST00000085111 756 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Lire1P11260 Gm12404-201ENSMUST00000122839 1661 ntTSL 5 BASIC12.21□□□□□ -0.45
Lire1P11260 Togaram2-205ENSMUST00000153445 3302 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
Lire1P11260 Crhr2-208ENSMUST00000212633 2041 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Lire1P11260 4930470G03Rik-201ENSMUST00000122926 2447 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Lire1P11260 Zfp772-201ENSMUST00000074455 2777 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Lire1P11260 AC114543.1-201ENSMUST00000226451 1558 ntBASIC12.21□□□□□ -0.46
Lire1P11260 Plekhg2-201ENSMUST00000094644 4623 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.46
Lire1P11260 AC121870.2-201ENSMUST00000214343 1870 ntBASIC12.21□□□□□ -0.46
Lire1P11260 Mpp4-210ENSMUST00000191200 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.46
Lire1P11260 Chrdl1-203ENSMUST00000112878 4050 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.46
Lire1P11260 Efcab12-201ENSMUST00000032468 2551 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.46
Lire1P11260 March7-203ENSMUST00000102748 3594 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Lire1P11260 Usp53-202ENSMUST00000197314 3586 ntTSL 5 BASIC12.2□□□□□ -0.46
Lire1P11260 Gm2885-201ENSMUST00000181895 1442 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Lire1P11260 Fhl2-202ENSMUST00000185893 1421 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Lire1P11260 Rbm46-201ENSMUST00000048647 1794 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Lire1P11260 Zscan22-203ENSMUST00000119989 2087 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Lire1P11260 Hlcs-201ENSMUST00000099512 4833 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Lire1P11260 Pdia4-201ENSMUST00000077290 2399 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Lire1P11260 Nek7-201ENSMUST00000027642 3737 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Lire1P11260 Pde7b-202ENSMUST00000164195 1665 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
Lire1P11260 Nt5c3b-202ENSMUST00000092689 1344 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Lire1P11260 Jmjd8-205ENSMUST00000133595 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Lire1P11260 Bag6-203ENSMUST00000172571 3599 ntTSL 5 BASIC12.2□□□□□ -0.46
Lire1P11260 Dmbt1-206ENSMUST00000213064 5779 ntTSL 5 BASIC12.2□□□□□ -0.46
Lire1P11260 AC166574.4-201ENSMUST00000227165 1937 ntBASIC12.2□□□□□ -0.46
Lire1P11260 Ypel3-202ENSMUST00000106356 785 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Lire1P11260 Pisd-ps2-202ENSMUST00000142526 1175 ntBASIC12.2□□□□□ -0.46
Lire1P11260 Rpl13a-201ENSMUST00000150350 1047 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Lire1P11260 Gas5-210ENSMUST00000159706 557 ntTSL 2 BASIC12.2□□□□□ -0.46
Lire1P11260 Ube2i-205ENSMUST00000172587 508 ntTSL 2 BASIC12.2□□□□□ -0.46
Lire1P11260 Tmem52-204ENSMUST00000178188 908 ntAPPRIS ALT2 TSL 2 BASIC12.2□□□□□ -0.46
Lire1P11260 Tmem52-205ENSMUST00000178238 968 ntAPPRIS P4 TSL 1 (best) BASIC12.2□□□□□ -0.46
Lire1P11260 Gm45784-201ENSMUST00000188360 142 ntBASIC12.2□□□□□ -0.46
Lire1P11260 Gm38230-201ENSMUST00000193572 1159 ntBASIC12.2□□□□□ -0.46
Lire1P11260 AC099934.3-201ENSMUST00000223192 1147 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Lire1P11260 Naa10-201ENSMUST00000033763 962 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Lire1P11260 Mrps17-201ENSMUST00000042191 832 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Lire1P11260 Swi5-201ENSMUST00000050410 775 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Lire1P11260 Tpd52-201ENSMUST00000063496 697 ntTSL 2 BASIC12.2□□□□□ -0.46
Lire1P11260 Sdf4-202ENSMUST00000097734 973 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Lire1P11260 Timd2-202ENSMUST00000109225 2236 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Lire1P11260 Epb41l2-201ENSMUST00000053748 4385 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Lire1P11260 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Lire1P11260 Sgce-207ENSMUST00000126151 1522 ntTSL 5 BASIC12.2□□□□□ -0.46
Lire1P11260 Slc6a4-201ENSMUST00000021195 2725 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Lire1P11260 S1pr1-201ENSMUST00000055676 3046 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Lire1P11260 Fli1-201ENSMUST00000016231 3318 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Lire1P11260 Slc8a2-201ENSMUST00000168693 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Lire1P11260 Cdc37l1-207ENSMUST00000225210 4163 ntAPPRIS ALT2 BASIC12.2□□□□□ -0.46
Lire1P11260 Smug1-201ENSMUST00000064067 3281 ntAPPRIS P1 TSL 2 BASIC12.2□□□□□ -0.46
Lire1P11260 Crhr2-201ENSMUST00000003568 2695 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Lire1P11260 As3mt-201ENSMUST00000003655 1751 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Lire1P11260 Cyp2ab1-205ENSMUST00000182741 1497 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Lire1P11260 Rgs12-207ENSMUST00000114285 2924 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
Lire1P11260 Nfatc4-202ENSMUST00000172271 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Lire1P11260 Ccnc-203ENSMUST00000108240 1406 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Lire1P11260 Scg2-201ENSMUST00000049972 2515 ntAPPRIS P1 TSL 2 BASIC12.19□□□□□ -0.46
Lire1P11260 Suclg2-201ENSMUST00000079847 2518 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Lire1P11260 Tmem215-201ENSMUST00000049655 4733 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Lire1P11260 Tnfaip8-207ENSMUST00000148159 1921 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Lire1P11260 Zufsp-201ENSMUST00000048222 2991 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Lire1P11260 Lypd6-202ENSMUST00000112712 3495 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 292.4 ms