Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Olfr647-ps1-201ENSMUST00000121599 960 ntBASIC13.48□□□□□ -0.25
Upf3aQ3ULJ3 1810063I02Rik-201ENSMUST00000130205 274 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Upf3aQ3ULJ3 1700084C06Rik-201ENSMUST00000135674 750 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Upf3aQ3ULJ3 Asb17os-201ENSMUST00000156292 496 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Upf3aQ3ULJ3 Gm454-201ENSMUST00000160126 751 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Upf3aQ3ULJ3 Cox16-204ENSMUST00000166723 579 ntTSL 2 BASIC13.48□□□□□ -0.25
Upf3aQ3ULJ3 Rpl36-ps4-201ENSMUST00000179601 354 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
Upf3aQ3ULJ3 Dleu2-205ENSMUST00000182325 463 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Upf3aQ3ULJ3 Dleu2-212ENSMUST00000183079 535 ntTSL 3 BASIC13.48□□□□□ -0.25
Upf3aQ3ULJ3 Gm34767-201ENSMUST00000191813 1062 ntBASIC13.48□□□□□ -0.25
Upf3aQ3ULJ3 Polr2i-201ENSMUST00000019882 819 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Upf3aQ3ULJ3 Gm32633-201ENSMUST00000205726 587 ntTSL 3 BASIC13.48□□□□□ -0.25
Upf3aQ3ULJ3 Gm8913-201ENSMUST00000209491 641 ntBASIC13.48□□□□□ -0.25
Upf3aQ3ULJ3 Ins2-201ENSMUST00000000220 478 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Upf3aQ3ULJ3 AC165260.3-202ENSMUST00000224550 1031 ntBASIC13.48□□□□□ -0.25
Upf3aQ3ULJ3 2410015M20Rik-201ENSMUST00000052832 755 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Upf3aQ3ULJ3 Klk1b27-201ENSMUST00000079859 889 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Upf3aQ3ULJ3 Pkdrej-201ENSMUST00000064370 7058 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
Upf3aQ3ULJ3 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC13.48□□□□□ -0.25
Upf3aQ3ULJ3 Rbm11-203ENSMUST00000114253 2699 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Upf3aQ3ULJ3 Ddx4-202ENSMUST00000099166 3012 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Upf3aQ3ULJ3 Ubtf-209ENSMUST00000173870 2936 ntAPPRIS P3 TSL 5 BASIC13.48□□□□□ -0.25
Upf3aQ3ULJ3 Hspa4-201ENSMUST00000020630 4618 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Upf3aQ3ULJ3 Pde4d-220ENSMUST00000177907 2244 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Upf3aQ3ULJ3 Mapk8-204ENSMUST00000111944 1528 ntAPPRIS ALT1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Upf3aQ3ULJ3 Kpna7-203ENSMUST00000116454 1500 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
Upf3aQ3ULJ3 Rinl-206ENSMUST00000209035 2898 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Upf3aQ3ULJ3 Ncor2-206ENSMUST00000111402 8862 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
Upf3aQ3ULJ3 Ppp1r12b-201ENSMUST00000045665 8840 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
Upf3aQ3ULJ3 Ccdc8-201ENSMUST00000094805 4809 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
Upf3aQ3ULJ3 Cecr2-202ENSMUST00000112686 9212 ntAPPRIS P2 TSL 5 BASIC13.48□□□□□ -0.25
Upf3aQ3ULJ3 Ell-201ENSMUST00000093454 3072 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Upf3aQ3ULJ3 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Upf3aQ3ULJ3 Zfp36l1-201ENSMUST00000021552 2990 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Upf3aQ3ULJ3 Fam160a2-204ENSMUST00000122327 3521 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
Upf3aQ3ULJ3 Pitpnm2-205ENSMUST00000161273 6792 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
Upf3aQ3ULJ3 Iffo2-201ENSMUST00000040023 5227 ntAPPRIS P3 TSL 5 BASIC13.47□□□□□ -0.25
Upf3aQ3ULJ3 Cyp4f16-208ENSMUST00000169591 2242 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Upf3aQ3ULJ3 Spg20-204ENSMUST00000118118 3981 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
Upf3aQ3ULJ3 Rnf168-201ENSMUST00000014218 3932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Upf3aQ3ULJ3 Cutal-201ENSMUST00000028228 2179 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Upf3aQ3ULJ3 Gm13124-201ENSMUST00000105748 1221 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
Upf3aQ3ULJ3 Cyb5d1-202ENSMUST00000108660 1034 ntTSL 5 BASIC13.47□□□□□ -0.25
Upf3aQ3ULJ3 Gm14832-201ENSMUST00000121289 322 ntBASIC13.47□□□□□ -0.25
Upf3aQ3ULJ3 4930539M17Rik-201ENSMUST00000194792 846 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Upf3aQ3ULJ3 Rprl1-202ENSMUST00000198476 238 ntBASIC13.47□□□□□ -0.25
Upf3aQ3ULJ3 Gm45224-201ENSMUST00000208203 414 ntBASIC13.47□□□□□ -0.25
Upf3aQ3ULJ3 Gm32141-201ENSMUST00000220189 488 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Upf3aQ3ULJ3 4930447K03Rik-201ENSMUST00000222745 1033 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Upf3aQ3ULJ3 Spata24-201ENSMUST00000025209 701 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Upf3aQ3ULJ3 Olfr398-201ENSMUST00000053874 945 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
Upf3aQ3ULJ3 Olfr450-201ENSMUST00000067503 933 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
Upf3aQ3ULJ3 Ndufa3-201ENSMUST00000076657 515 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Upf3aQ3ULJ3 Spata24-202ENSMUST00000096573 709 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Upf3aQ3ULJ3 Ildr2-201ENSMUST00000111416 8251 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Upf3aQ3ULJ3 Cdk11b-203ENSMUST00000105600 3170 ntAPPRIS P3 TSL 5 BASIC13.47□□□□□ -0.25
Upf3aQ3ULJ3 Gpr85-201ENSMUST00000060442 3661 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Upf3aQ3ULJ3 Lca5-202ENSMUST00000034793 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Upf3aQ3ULJ3 Rabep2-202ENSMUST00000106407 2234 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Upf3aQ3ULJ3 Rbbp5-206ENSMUST00000190825 2456 ntAPPRIS ALT1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Upf3aQ3ULJ3 Zfp575-201ENSMUST00000094705 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Upf3aQ3ULJ3 Ciz1-203ENSMUST00000113332 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Upf3aQ3ULJ3 Rab39-201ENSMUST00000068449 2971 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Upf3aQ3ULJ3 Prss23-201ENSMUST00000041761 3228 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Upf3aQ3ULJ3 Gm10544-202ENSMUST00000181887 1923 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Upf3aQ3ULJ3 Gm5639-201ENSMUST00000122305 2403 ntBASIC13.47□□□□□ -0.25
Upf3aQ3ULJ3 Slc36a1-202ENSMUST00000108867 1611 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Upf3aQ3ULJ3 Asic3-202ENSMUST00000196296 1593 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.25
Upf3aQ3ULJ3 Fgd4-211ENSMUST00000162671 2714 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Upf3aQ3ULJ3 Gm23200-201ENSMUST00000104379 132 ntBASIC13.46□□□□□ -0.25
Upf3aQ3ULJ3 Gm13296-201ENSMUST00000117854 997 ntBASIC13.46□□□□□ -0.25
Upf3aQ3ULJ3 Gm9083-201ENSMUST00000120423 819 ntBASIC13.46□□□□□ -0.25
Upf3aQ3ULJ3 Rpsa-ps12-201ENSMUST00000120596 892 ntBASIC13.46□□□□□ -0.25
Upf3aQ3ULJ3 9430021M05Rik-201ENSMUST00000145985 1201 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Upf3aQ3ULJ3 Stard10-207ENSMUST00000173270 670 ntTSL 5 BASIC13.46□□□□□ -0.25
Upf3aQ3ULJ3 Malat1-204ENSMUST00000173523 656 ntTSL 3 BASIC13.46□□□□□ -0.25
Upf3aQ3ULJ3 S100a3-204ENSMUST00000200290 509 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Upf3aQ3ULJ3 AC131743.2-201ENSMUST00000221031 968 ntTSL 5 BASIC13.46□□□□□ -0.25
Upf3aQ3ULJ3 Ift43-205ENSMUST00000222821 783 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
Upf3aQ3ULJ3 Gzmn-202ENSMUST00000225535 989 ntBASIC13.46□□□□□ -0.25
Upf3aQ3ULJ3 Agrp-201ENSMUST00000005849 661 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Upf3aQ3ULJ3 Brd2-201ENSMUST00000025193 4374 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Upf3aQ3ULJ3 Bpifb6-201ENSMUST00000088955 1669 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Upf3aQ3ULJ3 Pla2g6-201ENSMUST00000047816 2963 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
Upf3aQ3ULJ3 Cyp1b1-201ENSMUST00000024894 5128 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Upf3aQ3ULJ3 Arhgef1-202ENSMUST00000098683 3375 ntAPPRIS P4 TSL 1 (best) BASIC13.46□□□□□ -0.26
Upf3aQ3ULJ3 Armc7-201ENSMUST00000035240 2260 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Upf3aQ3ULJ3 Os9-201ENSMUST00000080975 2458 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.26
Upf3aQ3ULJ3 Trim10-201ENSMUST00000060524 2245 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Upf3aQ3ULJ3 Stox2-201ENSMUST00000079195 10467 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Upf3aQ3ULJ3 Kdelr1-205ENSMUST00000211716 1350 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Upf3aQ3ULJ3 Pam-202ENSMUST00000097625 4102 ntAPPRIS P2 TSL 5 BASIC13.45□□□□□ -0.26
Upf3aQ3ULJ3 Snph-201ENSMUST00000028951 4730 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
Upf3aQ3ULJ3 4930444K16Rik-201ENSMUST00000220438 1767 ntBASIC13.45□□□□□ -0.26
Upf3aQ3ULJ3 Ppip5k2-202ENSMUST00000112845 6239 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
Upf3aQ3ULJ3 4930488N24Rik-201ENSMUST00000188802 1527 ntBASIC13.45□□□□□ -0.26
Upf3aQ3ULJ3 Pdlim5-208ENSMUST00000196220 1725 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Upf3aQ3ULJ3 Radil-201ENSMUST00000063635 3700 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
Upf3aQ3ULJ3 Scfd2-203ENSMUST00000113542 2279 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Upf3aQ3ULJ3 Creb3-201ENSMUST00000102944 1884 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Retrieved 100 of 76,532 protein–RNA pairs in 46 ms