Protein–RNA interactions for Protein: Q9JKE2

Trem1, Triggering receptor expressed on myeloid cells 1, mousemouse

Predictions only

Length 230 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trem1Q9JKE2 Gm21749-201ENSMUST00000189343 696 ntBASIC11.48□□□□□ -0.57
Trem1Q9JKE2 Gm21901-201ENSMUST00000189568 696 ntBASIC11.48□□□□□ -0.57
Trem1Q9JKE2 Gm29424-201ENSMUST00000189716 696 ntBASIC11.48□□□□□ -0.57
Trem1Q9JKE2 Gm28599-201ENSMUST00000189838 694 ntBASIC11.48□□□□□ -0.57
Trem1Q9JKE2 Gm21867-201ENSMUST00000189917 696 ntBASIC11.48□□□□□ -0.57
Trem1Q9JKE2 Gm29269-201ENSMUST00000190087 696 ntBASIC11.48□□□□□ -0.57
Trem1Q9JKE2 Gm21722-201ENSMUST00000190153 696 ntBASIC11.48□□□□□ -0.57
Trem1Q9JKE2 Gm28423-201ENSMUST00000190701 696 ntBASIC11.48□□□□□ -0.57
Trem1Q9JKE2 Gm21899-201ENSMUST00000190745 696 ntBASIC11.48□□□□□ -0.57
Trem1Q9JKE2 Gm21910-201ENSMUST00000191163 696 ntBASIC11.48□□□□□ -0.57
Trem1Q9JKE2 Gm21849-201ENSMUST00000191571 696 ntBASIC11.48□□□□□ -0.57
Trem1Q9JKE2 Gm28678-201ENSMUST00000191593 696 ntBASIC11.48□□□□□ -0.57
Trem1Q9JKE2 Gm20910-201ENSMUST00000193268 696 ntBASIC11.48□□□□□ -0.57
Trem1Q9JKE2 Gm21871-201ENSMUST00000194621 696 ntBASIC11.48□□□□□ -0.57
Trem1Q9JKE2 Cldn25-ps-201ENSMUST00000197641 693 ntBASIC11.48□□□□□ -0.57
Trem1Q9JKE2 Gm2651-201ENSMUST00000203560 838 ntBASIC11.48□□□□□ -0.57
Trem1Q9JKE2 Gm9449-201ENSMUST00000207265 1011 ntBASIC11.48□□□□□ -0.57
Trem1Q9JKE2 AC132467.2-202ENSMUST00000227726 559 ntBASIC11.48□□□□□ -0.57
Trem1Q9JKE2 Tmod4-201ENSMUST00000005769 1242 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Trem1Q9JKE2 Gm10819-201ENSMUST00000099988 561 ntBASIC11.48□□□□□ -0.57
Trem1Q9JKE2 Pbx1-208ENSMUST00000188912 3970 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Trem1Q9JKE2 Sema4f-201ENSMUST00000000641 4086 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Trem1Q9JKE2 Gjb4-202ENSMUST00000106090 1446 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
Trem1Q9JKE2 Krt18-201ENSMUST00000023803 1400 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Trem1Q9JKE2 Gjb4-201ENSMUST00000060419 1445 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Trem1Q9JKE2 Me3-202ENSMUST00000032856 4485 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Trem1Q9JKE2 Krt36-201ENSMUST00000107416 1671 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
Trem1Q9JKE2 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Trem1Q9JKE2 Kdm2b-204ENSMUST00000118027 5062 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
Trem1Q9JKE2 Rbm46-201ENSMUST00000048647 1794 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
Trem1Q9JKE2 Cnbd2-202ENSMUST00000073942 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Trem1Q9JKE2 Mrgprh-201ENSMUST00000075296 1809 ntAPPRIS P1 BASIC11.48□□□□□ -0.57
Trem1Q9JKE2 Cldn15-201ENSMUST00000001790 1850 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Trem1Q9JKE2 Gm7224-201ENSMUST00000121359 2066 ntBASIC11.48□□□□□ -0.57
Trem1Q9JKE2 Ggt1-201ENSMUST00000006508 2167 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Trem1Q9JKE2 Foxp1-221ENSMUST00000176632 2336 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
Trem1Q9JKE2 Foxp1-222ENSMUST00000176850 2339 ntAPPRIS ALT1 TSL 5 BASIC11.48□□□□□ -0.57
Trem1Q9JKE2 Qpctl-201ENSMUST00000032566 2710 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Trem1Q9JKE2 Set-202ENSMUST00000102866 2824 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
Trem1Q9JKE2 Tesk2-201ENSMUST00000045542 3033 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Trem1Q9JKE2 Ngef-202ENSMUST00000068681 3109 ntAPPRIS P4 TSL 1 (best) BASIC11.48□□□□□ -0.57
Trem1Q9JKE2 Smc4-202ENSMUST00000107803 3983 ntTSL 5 BASIC11.48□□□□□ -0.57
Trem1Q9JKE2 Ift46-201ENSMUST00000002099 4169 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Trem1Q9JKE2 Nos3-201ENSMUST00000030834 4132 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trem1Q9JKE2 Ep400-202ENSMUST00000112433 3399 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Trem1Q9JKE2 Wdr89-201ENSMUST00000062370 2979 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trem1Q9JKE2 Nbeal2-210ENSMUST00000167320 8803 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trem1Q9JKE2 Suclg2-201ENSMUST00000079847 2518 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trem1Q9JKE2 Ttll10-202ENSMUST00000051509 2304 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trem1Q9JKE2 Smndc1-201ENSMUST00000025997 2125 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trem1Q9JKE2 Zfp954-201ENSMUST00000056246 2042 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trem1Q9JKE2 Atat1-201ENSMUST00000056034 1930 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trem1Q9JKE2 Btnl1-201ENSMUST00000080254 1861 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
Trem1Q9JKE2 Slc31a2-201ENSMUST00000084530 1820 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trem1Q9JKE2 Xpo1-201ENSMUST00000020538 5145 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
Trem1Q9JKE2 Crybg2-201ENSMUST00000121391 4761 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trem1Q9JKE2 Pex2-206ENSMUST00000195855 1587 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trem1Q9JKE2 Ints6-202ENSMUST00000223585 10883 ntAPPRIS P1 BASIC11.47□□□□□ -0.57
Trem1Q9JKE2 Irf3-202ENSMUST00000107834 1429 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trem1Q9JKE2 Phb2-201ENSMUST00000004375 1318 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
Trem1Q9JKE2 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC11.47□□□□□ -0.57
Trem1Q9JKE2 Uqcc2-203ENSMUST00000119227 452 ntTSL 3 BASIC11.47□□□□□ -0.57
Trem1Q9JKE2 Gm14140-201ENSMUST00000119999 995 ntBASIC11.47□□□□□ -0.57
Trem1Q9JKE2 Nr2f1-202ENSMUST00000125176 841 ntTSL 5 BASIC11.47□□□□□ -0.57
Trem1Q9JKE2 Rps27l-203ENSMUST00000127896 575 ntTSL 5 BASIC11.47□□□□□ -0.57
Trem1Q9JKE2 Plpp7-202ENSMUST00000140762 634 ntTSL 3 BASIC11.47□□□□□ -0.57
Trem1Q9JKE2 Gm10244-202ENSMUST00000156905 474 ntTSL 3 BASIC11.47□□□□□ -0.57
Trem1Q9JKE2 Cby3-202ENSMUST00000164067 731 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
Trem1Q9JKE2 AC122305.4-201ENSMUST00000216159 1206 ntBASIC11.47□□□□□ -0.57
Trem1Q9JKE2 AC166341.4-201ENSMUST00000220625 123 ntBASIC11.47□□□□□ -0.57
Trem1Q9JKE2 Miox-201ENSMUST00000023282 1130 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trem1Q9JKE2 Gstm1-201ENSMUST00000004140 1289 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trem1Q9JKE2 Mdk-202ENSMUST00000069423 773 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trem1Q9JKE2 Med12l-203ENSMUST00000040846 3747 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Trem1Q9JKE2 Arhgap36-202ENSMUST00000114904 3033 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trem1Q9JKE2 Gm37422-201ENSMUST00000193794 4718 ntBASIC11.47□□□□□ -0.57
Trem1Q9JKE2 Psmd11-201ENSMUST00000017572 2848 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trem1Q9JKE2 Ap2b1-206ENSMUST00000176523 2742 ntTSL 5 BASIC11.47□□□□□ -0.57
Trem1Q9JKE2 Rpap2-205ENSMUST00000112655 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trem1Q9JKE2 Gm26868-201ENSMUST00000181927 2655 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Trem1Q9JKE2 Fbrs-201ENSMUST00000048896 2650 ntAPPRIS P2 TSL 5 BASIC11.47□□□□□ -0.57
Trem1Q9JKE2 Irf9-202ENSMUST00000130697 2459 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trem1Q9JKE2 Mageb4-202ENSMUST00000113969 2403 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trem1Q9JKE2 Mageb4-201ENSMUST00000096378 2401 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trem1Q9JKE2 Ly75-202ENSMUST00000112533 6901 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
Trem1Q9JKE2 Pak6-202ENSMUST00000110853 3677 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trem1Q9JKE2 Bmp1-201ENSMUST00000022693 3684 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trem1Q9JKE2 Atp1a3-205ENSMUST00000196684 3642 ntTSL 5 BASIC11.47□□□□□ -0.57
Trem1Q9JKE2 Eif5a2-201ENSMUST00000060500 5027 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trem1Q9JKE2 Zkscan3-207ENSMUST00000223831 2101 ntBASIC11.47□□□□□ -0.57
Trem1Q9JKE2 Gnb1l-202ENSMUST00000090086 3549 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
Trem1Q9JKE2 Slc12a8-202ENSMUST00000117134 2081 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Trem1Q9JKE2 Lsp1-211ENSMUST00000149521 1910 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Trem1Q9JKE2 Saraf-201ENSMUST00000033933 1860 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Trem1Q9JKE2 Rab39-201ENSMUST00000068449 2971 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Trem1Q9JKE2 Vwa3b-202ENSMUST00000067178 1769 ntAPPRIS P5 TSL 2 BASIC11.46□□□□□ -0.57
Trem1Q9JKE2 Cttn-201ENSMUST00000033407 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
Trem1Q9JKE2 Txlna-202ENSMUST00000084264 4847 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Trem1Q9JKE2 AI839979-202ENSMUST00000201790 1539 ntTSL 2 BASIC11.46□□□□□ -0.57
Trem1Q9JKE2 Nol4-204ENSMUST00000097651 4549 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 41.9 ms