Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Gm24279-201ENSMUST00000104236 131 ntBASIC17.03■□□□□ 0.32
Scn4aQ9ER60 Fmr1nb-203ENSMUST00000114647 679 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Scn4aQ9ER60 Gm6322-201ENSMUST00000118789 1004 ntBASIC17.03■□□□□ 0.32
Scn4aQ9ER60 Tsc22d3-204ENSMUST00000123898 952 ntTSL 5 BASIC17.03■□□□□ 0.32
Scn4aQ9ER60 Gm5335-201ENSMUST00000182995 1000 ntBASIC17.03■□□□□ 0.32
Scn4aQ9ER60 Gm28651-201ENSMUST00000185335 644 ntTSL 3 BASIC17.03■□□□□ 0.32
Scn4aQ9ER60 Gng8-202ENSMUST00000205459 522 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
Scn4aQ9ER60 Gm45875-201ENSMUST00000212178 781 ntTSL 3 BASIC17.03■□□□□ 0.32
Scn4aQ9ER60 Gm9204-201ENSMUST00000212641 947 ntBASIC17.03■□□□□ 0.32
Scn4aQ9ER60 Gm35657-201ENSMUST00000215869 989 ntTSL 5 BASIC17.03■□□□□ 0.32
Scn4aQ9ER60 Tsga10ip-201ENSMUST00000044527 487 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Scn4aQ9ER60 Lhfpl5-201ENSMUST00000080780 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Scn4aQ9ER60 Lrp5-201ENSMUST00000025856 5161 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Scn4aQ9ER60 Ttll11-201ENSMUST00000028248 3176 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Scn4aQ9ER60 Sema7a-201ENSMUST00000043059 3297 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Scn4aQ9ER60 1700052K11Rik-201ENSMUST00000190120 3708 ntBASIC17.02■□□□□ 0.32
Scn4aQ9ER60 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Scn4aQ9ER60 Hpse2-201ENSMUST00000099428 1779 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Scn4aQ9ER60 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
Scn4aQ9ER60 Gm43721-201ENSMUST00000199677 2313 ntBASIC17.02■□□□□ 0.32
Scn4aQ9ER60 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Scn4aQ9ER60 Gm43154-214ENSMUST00000211225 1420 ntTSL 5 BASIC17.02■□□□□ 0.32
Scn4aQ9ER60 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
Scn4aQ9ER60 Lyar-202ENSMUST00000114106 1504 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
Scn4aQ9ER60 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Scn4aQ9ER60 Bola3-203ENSMUST00000122216 554 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Scn4aQ9ER60 Gm27956-201ENSMUST00000175604 260 ntBASIC17.02■□□□□ 0.31
Scn4aQ9ER60 1700065I16Rik-201ENSMUST00000185277 512 ntBASIC17.02■□□□□ 0.31
Scn4aQ9ER60 Gm2345-201ENSMUST00000193451 589 ntBASIC17.02■□□□□ 0.31
Scn4aQ9ER60 Gm35549-202ENSMUST00000203656 1009 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
Scn4aQ9ER60 Gm45469-201ENSMUST00000210468 854 ntTSL 3 BASIC17.02■□□□□ 0.31
Scn4aQ9ER60 Gm45758-201ENSMUST00000212448 1006 ntBASIC17.02■□□□□ 0.31
Scn4aQ9ER60 Olfr368-202ENSMUST00000217299 1200 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
Scn4aQ9ER60 Isca2-206ENSMUST00000222449 374 ntTSL 2 BASIC17.02■□□□□ 0.31
Scn4aQ9ER60 D730050B12Rik-201ENSMUST00000223149 585 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Scn4aQ9ER60 Lxn-201ENSMUST00000058981 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Scn4aQ9ER60 Prss3-201ENSMUST00000096003 822 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Scn4aQ9ER60 Gm10605-202ENSMUST00000183019 3198 ntBASIC17.02■□□□□ 0.31
Scn4aQ9ER60 Akr1b8-201ENSMUST00000038406 1358 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Scn4aQ9ER60 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Scn4aQ9ER60 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Scn4aQ9ER60 AC154412.1-201ENSMUST00000226540 2786 ntBASIC17.02■□□□□ 0.31
Scn4aQ9ER60 Meikin-201ENSMUST00000094193 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Scn4aQ9ER60 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Scn4aQ9ER60 Raf1-201ENSMUST00000000451 3070 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Scn4aQ9ER60 Cap2-202ENSMUST00000119341 2454 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Scn4aQ9ER60 Gcat-201ENSMUST00000006544 2365 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Scn4aQ9ER60 A930007I19Rik-203ENSMUST00000181726 2099 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Scn4aQ9ER60 Tcn2-201ENSMUST00000020710 1897 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
Scn4aQ9ER60 Plek2-201ENSMUST00000021544 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Scn4aQ9ER60 Phkg2-201ENSMUST00000033086 1570 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Scn4aQ9ER60 Gm12791-201ENSMUST00000120788 655 ntBASIC17.01■□□□□ 0.31
Scn4aQ9ER60 U2af1l4-218ENSMUST00000166960 747 ntTSL 3 BASIC17.01■□□□□ 0.31
Scn4aQ9ER60 Gm28833-201ENSMUST00000189671 559 ntBASIC17.01■□□□□ 0.31
Scn4aQ9ER60 Gm44867-201ENSMUST00000205675 530 ntTSL 3 BASIC17.01■□□□□ 0.31
Scn4aQ9ER60 Gm30671-201ENSMUST00000214898 318 ntBASIC17.01■□□□□ 0.31
Scn4aQ9ER60 Sox5-202ENSMUST00000077160 2526 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Scn4aQ9ER60 Olfm2-201ENSMUST00000034692 1836 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Scn4aQ9ER60 Il2rb-201ENSMUST00000089398 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Scn4aQ9ER60 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Scn4aQ9ER60 Ttc22-201ENSMUST00000047922 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Scn4aQ9ER60 Sgf29-201ENSMUST00000032956 1312 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Scn4aQ9ER60 Bmp3-202ENSMUST00000197143 2739 ntTSL 2 BASIC17.01■□□□□ 0.31
Scn4aQ9ER60 Acrbp-202ENSMUST00000088294 1883 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
Scn4aQ9ER60 Bbs4-201ENSMUST00000026265 2518 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Scn4aQ9ER60 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
Scn4aQ9ER60 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Scn4aQ9ER60 AW209491-202ENSMUST00000178289 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Scn4aQ9ER60 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Scn4aQ9ER60 Hmgn2-201ENSMUST00000100472 881 ntAPPRIS ALT1 TSL 2 BASIC17■□□□□ 0.31
Scn4aQ9ER60 Gm5419-201ENSMUST00000119301 527 ntBASIC17■□□□□ 0.31
Scn4aQ9ER60 Gm22379-201ENSMUST00000157480 131 ntBASIC17■□□□□ 0.31
Scn4aQ9ER60 Gm24809-201ENSMUST00000175318 271 ntBASIC17■□□□□ 0.31
Scn4aQ9ER60 Gm9162-201ENSMUST00000182081 991 ntBASIC17■□□□□ 0.31
Scn4aQ9ER60 Gm7627-201ENSMUST00000183205 999 ntBASIC17■□□□□ 0.31
Scn4aQ9ER60 Gm39288-201ENSMUST00000210554 446 ntBASIC17■□□□□ 0.31
Scn4aQ9ER60 AC114645.1-201ENSMUST00000215831 187 ntBASIC17■□□□□ 0.31
Scn4aQ9ER60 Fam212a-201ENSMUST00000048568 1025 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Scn4aQ9ER60 Rps3a2-201ENSMUST00000074245 792 ntBASIC17■□□□□ 0.31
Scn4aQ9ER60 Rps3a3-201ENSMUST00000074680 795 ntBASIC17■□□□□ 0.31
Scn4aQ9ER60 Npc2-201ENSMUST00000021668 3299 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Scn4aQ9ER60 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Scn4aQ9ER60 AC154725.1-201ENSMUST00000224826 1961 ntBASIC17■□□□□ 0.31
Scn4aQ9ER60 C230004F18Rik-203ENSMUST00000137153 2138 ntTSL 1 (best) BASIC17■□□□□ 0.31
Scn4aQ9ER60 Gm6655-201ENSMUST00000201932 1309 ntBASIC17■□□□□ 0.31
Scn4aQ9ER60 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC17■□□□□ 0.31
Scn4aQ9ER60 Asz1-201ENSMUST00000010940 1736 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Scn4aQ9ER60 Olfr533-203ENSMUST00000215308 2345 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
Scn4aQ9ER60 Gm20125-205ENSMUST00000208005 1979 ntTSL 5 BASIC17■□□□□ 0.31
Scn4aQ9ER60 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Scn4aQ9ER60 Ugt1a5-201ENSMUST00000097659 2203 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Scn4aQ9ER60 Pex5l-203ENSMUST00000108221 1187 ntTSL 1 (best) BASIC17■□□□□ 0.31
Scn4aQ9ER60 Gm3415-201ENSMUST00000110595 924 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
Scn4aQ9ER60 Srpk1-202ENSMUST00000114767 445 ntTSL 3 BASIC17■□□□□ 0.31
Scn4aQ9ER60 Gm11500-201ENSMUST00000118237 601 ntBASIC17■□□□□ 0.31
Scn4aQ9ER60 Pradc1-204ENSMUST00000126805 953 ntTSL 2 BASIC17■□□□□ 0.31
Scn4aQ9ER60 Mir432-201ENSMUST00000157230 75 ntBASIC17■□□□□ 0.31
Scn4aQ9ER60 Pitpnm2os2-201ENSMUST00000159053 828 ntTSL 2 BASIC17■□□□□ 0.31
Scn4aQ9ER60 2310034O05Rik-201ENSMUST00000185221 1107 ntTSL 1 (best) BASIC17■□□□□ 0.31
Scn4aQ9ER60 Gm6331-201ENSMUST00000217890 450 ntBASIC17■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 41.6 ms