Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Gm45552-201ENSMUST00000209340 778 ntTSL 3 BASIC12.08□□□□□ -0.48
Ddx28Q9CWT6 AC135669.1-201ENSMUST00000213585 412 ntBASIC12.08□□□□□ -0.48
Ddx28Q9CWT6 Gm17870-201ENSMUST00000219489 1174 ntBASIC12.08□□□□□ -0.48
Ddx28Q9CWT6 Ins1-201ENSMUST00000039652 1016 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Ddx28Q9CWT6 Fam173b-201ENSMUST00000042702 1164 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Ddx28Q9CWT6 Srd5a2-201ENSMUST00000043458 854 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Ddx28Q9CWT6 Hist1h2bq-201ENSMUST00000078156 381 ntAPPRIS P1 BASIC12.08□□□□□ -0.48
Ddx28Q9CWT6 Odf3l2-201ENSMUST00000095464 1248 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Ddx28Q9CWT6 Vamp1-203ENSMUST00000100942 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Ddx28Q9CWT6 Pomgnt1-201ENSMUST00000106494 2226 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Ddx28Q9CWT6 Usp53-202ENSMUST00000197314 3586 ntTSL 5 BASIC12.08□□□□□ -0.48
Ddx28Q9CWT6 Uckl1-201ENSMUST00000057816 1849 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Ddx28Q9CWT6 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
Ddx28Q9CWT6 Vps52-201ENSMUST00000025178 3332 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Ddx28Q9CWT6 Stxbp1-202ENSMUST00000077458 3616 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Ddx28Q9CWT6 Rfx6-204ENSMUST00000219364 2682 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Ddx28Q9CWT6 Hhatl-202ENSMUST00000163981 1744 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Ddx28Q9CWT6 Adcyap1r1-203ENSMUST00000165786 1745 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
Ddx28Q9CWT6 Slc13a2-201ENSMUST00000001122 2412 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Ddx28Q9CWT6 Sphk2-203ENSMUST00000210060 2577 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Ddx28Q9CWT6 Arhgef2-208ENSMUST00000175911 2030 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
Ddx28Q9CWT6 Tmem132e-202ENSMUST00000092852 4105 ntAPPRIS ALT2 TSL 2 BASIC12.08□□□□□ -0.48
Ddx28Q9CWT6 Cdc7-203ENSMUST00000117196 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Ddx28Q9CWT6 Scg3-202ENSMUST00000213324 2152 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Ddx28Q9CWT6 Spg11-201ENSMUST00000036450 7671 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Ddx28Q9CWT6 Gm7324-201ENSMUST00000094051 1647 ntAPPRIS P1 BASIC12.08□□□□□ -0.48
Ddx28Q9CWT6 Flywch1-201ENSMUST00000045517 2798 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Ddx28Q9CWT6 Lmntd2-201ENSMUST00000026573 2095 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Ddx28Q9CWT6 Fbxw7-201ENSMUST00000029727 2221 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
Ddx28Q9CWT6 Agpat3-205ENSMUST00000105390 3513 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
Ddx28Q9CWT6 Oprm1-215ENSMUST00000105607 2369 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Ddx28Q9CWT6 Unk-202ENSMUST00000106452 3696 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Ddx28Q9CWT6 Kctd18-202ENSMUST00000114410 2512 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Ddx28Q9CWT6 Slc2a4-201ENSMUST00000018710 2524 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Ddx28Q9CWT6 Gsn-201ENSMUST00000028239 2653 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
Ddx28Q9CWT6 Dgcr2-203ENSMUST00000117082 2987 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Ddx28Q9CWT6 Tmem269-202ENSMUST00000212054 1504 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Ddx28Q9CWT6 Gm4858-202ENSMUST00000194595 1810 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Ddx28Q9CWT6 Draxin-201ENSMUST00000030862 5200 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Ddx28Q9CWT6 Slc6a6-201ENSMUST00000032185 6186 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Ddx28Q9CWT6 Gh-201ENSMUST00000103071 862 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Ddx28Q9CWT6 Gm7488-201ENSMUST00000117148 684 ntBASIC12.07□□□□□ -0.48
Ddx28Q9CWT6 Pigyl-201ENSMUST00000123680 695 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.48
Ddx28Q9CWT6 Mvk-203ENSMUST00000124260 1051 ntTSL 5 BASIC12.07□□□□□ -0.48
Ddx28Q9CWT6 Gm11476-201ENSMUST00000127006 2019 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Ddx28Q9CWT6 Ift27-201ENSMUST00000016781 1012 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Ddx28Q9CWT6 Eci2-211ENSMUST00000171229 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Ddx28Q9CWT6 Gm17705-201ENSMUST00000172285 1555 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Ddx28Q9CWT6 2700012I20Rik-201ENSMUST00000180525 684 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Ddx28Q9CWT6 Gm29542-201ENSMUST00000186876 704 ntTSL 3 BASIC12.07□□□□□ -0.48
Ddx28Q9CWT6 Gm43102-201ENSMUST00000201004 2324 ntBASIC12.07□□□□□ -0.48
Ddx28Q9CWT6 Gm19265-201ENSMUST00000201818 894 ntTSL 3 BASIC12.07□□□□□ -0.48
Ddx28Q9CWT6 Pym1-203ENSMUST00000218218 1143 ntTSL 3 BASIC12.07□□□□□ -0.48
Ddx28Q9CWT6 AC155258.1-201ENSMUST00000219303 253 ntBASIC12.07□□□□□ -0.48
Ddx28Q9CWT6 Gm6218-201ENSMUST00000219812 628 ntBASIC12.07□□□□□ -0.48
Ddx28Q9CWT6 Fscn2-201ENSMUST00000026445 1713 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Ddx28Q9CWT6 Hfe-201ENSMUST00000006787 516 ntTSL 5 BASIC12.07□□□□□ -0.48
Ddx28Q9CWT6 Med8-202ENSMUST00000073881 1052 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Ddx28Q9CWT6 Hfe-203ENSMUST00000091707 816 ntTSL 5 BASIC12.07□□□□□ -0.48
Ddx28Q9CWT6 Prkcg-201ENSMUST00000100301 3127 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Ddx28Q9CWT6 Psap-201ENSMUST00000004316 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Ddx28Q9CWT6 Epb41l2-201ENSMUST00000053748 4385 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Ddx28Q9CWT6 C030034I22Rik-202ENSMUST00000188481 4231 ntBASIC12.07□□□□□ -0.48
Ddx28Q9CWT6 Tbl1xr1-211ENSMUST00000202747 4209 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Ddx28Q9CWT6 Hoxc10-201ENSMUST00000001699 1909 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Ddx28Q9CWT6 Atp9a-204ENSMUST00000109177 3456 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Ddx28Q9CWT6 Prdx2-203ENSMUST00000109734 1612 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.48
Ddx28Q9CWT6 Gpr19-208ENSMUST00000165392 1643 ntTSL 3 BASIC12.07□□□□□ -0.48
Ddx28Q9CWT6 Gpr19-202ENSMUST00000066107 1647 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Ddx28Q9CWT6 Pabpc4-202ENSMUST00000080178 3019 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Ddx28Q9CWT6 Gm5779-202ENSMUST00000219564 1477 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Ddx28Q9CWT6 Hnrnpk-232ENSMUST00000225674 2704 ntBASIC12.07□□□□□ -0.48
Ddx28Q9CWT6 Fam217a-204ENSMUST00000225242 1811 ntAPPRIS ALT2 BASIC12.07□□□□□ -0.48
Ddx28Q9CWT6 Neil1-203ENSMUST00000190245 1693 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Ddx28Q9CWT6 AI839979-202ENSMUST00000201790 1539 ntTSL 2 BASIC12.06□□□□□ -0.48
Ddx28Q9CWT6 Net1-201ENSMUST00000091853 2680 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
Ddx28Q9CWT6 Ptger4-202ENSMUST00000120563 3312 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Ddx28Q9CWT6 Txlna-202ENSMUST00000084264 4847 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Ddx28Q9CWT6 Gm5939-201ENSMUST00000119613 2874 ntBASIC12.06□□□□□ -0.48
Ddx28Q9CWT6 S100pbp-205ENSMUST00000117350 2241 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Ddx28Q9CWT6 Slc6a4-201ENSMUST00000021195 2725 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Ddx28Q9CWT6 Cyp2s1-201ENSMUST00000043314 2745 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Ddx28Q9CWT6 BC055324-202ENSMUST00000097493 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Ddx28Q9CWT6 Rims3-202ENSMUST00000106283 6437 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
Ddx28Q9CWT6 Rhobtb1-205ENSMUST00000164034 2421 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Ddx28Q9CWT6 Fbn2-201ENSMUST00000025497 10480 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
Ddx28Q9CWT6 Ccnc-203ENSMUST00000108240 1406 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Ddx28Q9CWT6 Nrf1-210ENSMUST00000115211 3295 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Ddx28Q9CWT6 Polr1b-201ENSMUST00000028874 2769 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Ddx28Q9CWT6 Cntnap4-201ENSMUST00000034225 4848 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Ddx28Q9CWT6 Ghr-203ENSMUST00000110698 1171 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Ddx28Q9CWT6 Gfpt1-202ENSMUST00000113655 1255 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Ddx28Q9CWT6 Crybb3-205ENSMUST00000120506 804 ntAPPRIS P1 TSL 3 BASIC12.06□□□□□ -0.48
Ddx28Q9CWT6 Gm13716-201ENSMUST00000126401 808 ntTSL 5 BASIC12.06□□□□□ -0.48
Ddx28Q9CWT6 4930527A07Rik-201ENSMUST00000130677 559 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Ddx28Q9CWT6 Trp53tg5-201ENSMUST00000017864 934 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Ddx28Q9CWT6 1700022A21Rik-201ENSMUST00000182745 1051 ntBASIC12.06□□□□□ -0.48
Ddx28Q9CWT6 Gm38144-201ENSMUST00000192790 465 ntBASIC12.06□□□□□ -0.48
Ddx28Q9CWT6 Tbc1d17-209ENSMUST00000207293 692 ntTSL 3 BASIC12.06□□□□□ -0.48
Ddx28Q9CWT6 Cartpt-201ENSMUST00000022150 827 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 40.2 ms