Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Calhm3-201ENSMUST00000178630 1044 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
Smc1aQ9CU62 Gm27514-201ENSMUST00000183692 110 ntBASIC14.4□□□□□ -0.1
Smc1aQ9CU62 1700065I16Rik-202ENSMUST00000185477 813 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Smc1aQ9CU62 4930502C17Rik-201ENSMUST00000200282 948 ntBASIC14.4□□□□□ -0.1
Smc1aQ9CU62 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC14.4□□□□□ -0.1
Smc1aQ9CU62 Gm7399-201ENSMUST00000032395 858 ntBASIC14.4□□□□□ -0.1
Smc1aQ9CU62 Parp3-202ENSMUST00000112479 2030 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Smc1aQ9CU62 Gm8337-201ENSMUST00000187358 1938 ntBASIC14.4□□□□□ -0.1
Smc1aQ9CU62 Stx11-201ENSMUST00000042861 4173 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Smc1aQ9CU62 Gm16010-202ENSMUST00000145410 4427 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Smc1aQ9CU62 Bcat1-202ENSMUST00000048252 1642 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Smc1aQ9CU62 Sacs-202ENSMUST00000119509 3468 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
Smc1aQ9CU62 Olfr533-206ENSMUST00000217179 2825 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
Smc1aQ9CU62 Cacna2d1-201ENSMUST00000039370 3933 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Smc1aQ9CU62 Ap3m2-201ENSMUST00000163739 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Smc1aQ9CU62 Klk2-ps-202ENSMUST00000206865 2684 ntTSL 5 BASIC14.39□□□□□ -0.11
Smc1aQ9CU62 Tmem132e-202ENSMUST00000092852 4105 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
Smc1aQ9CU62 Arhgap22-202ENSMUST00000111956 2596 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Smc1aQ9CU62 Tor1aip2-207ENSMUST00000128941 2925 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Smc1aQ9CU62 Slc25a25-201ENSMUST00000028160 3294 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Smc1aQ9CU62 Max-201ENSMUST00000082136 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Smc1aQ9CU62 Wipf3-201ENSMUST00000126637 4414 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Smc1aQ9CU62 Kcnq3-201ENSMUST00000070256 11824 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Smc1aQ9CU62 Cad-201ENSMUST00000013773 7137 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Smc1aQ9CU62 Irak1-203ENSMUST00000101458 2052 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Smc1aQ9CU62 Gm16177-201ENSMUST00000120728 718 ntBASIC14.39□□□□□ -0.11
Smc1aQ9CU62 4930407G08Rik-201ENSMUST00000145831 698 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Smc1aQ9CU62 Ccdc70-201ENSMUST00000017193 1054 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Smc1aQ9CU62 Gm8801-201ENSMUST00000173255 1064 ntBASIC14.39□□□□□ -0.11
Smc1aQ9CU62 1600014C10Rik-203ENSMUST00000177983 403 ntTSL 2 BASIC14.39□□□□□ -0.11
Smc1aQ9CU62 Gm6013-201ENSMUST00000212264 699 ntBASIC14.39□□□□□ -0.11
Smc1aQ9CU62 Car5a-201ENSMUST00000057653 1249 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Smc1aQ9CU62 Fam173a-201ENSMUST00000072735 800 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Smc1aQ9CU62 Ppil3-201ENSMUST00000081677 896 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Smc1aQ9CU62 Gm24447-201ENSMUST00000083977 338 ntBASIC14.39□□□□□ -0.11
Smc1aQ9CU62 Gm13075-202ENSMUST00000149247 1621 ntTSL 5 BASIC14.39□□□□□ -0.11
Smc1aQ9CU62 Glis3-202ENSMUST00000112612 3016 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Smc1aQ9CU62 Gm37269-201ENSMUST00000193906 1891 ntBASIC14.39□□□□□ -0.11
Smc1aQ9CU62 Syt8-204ENSMUST00000118276 1503 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
Smc1aQ9CU62 C130050O18Rik-201ENSMUST00000052176 1532 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Smc1aQ9CU62 Rp2-202ENSMUST00000115387 4498 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Smc1aQ9CU62 4933435G04Rik-201ENSMUST00000205892 2108 ntBASIC14.39□□□□□ -0.11
Smc1aQ9CU62 Gm36445-201ENSMUST00000209344 1432 ntTSL 5 BASIC14.39□□□□□ -0.11
Smc1aQ9CU62 Rara-207ENSMUST00000164748 3129 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Smc1aQ9CU62 Gm10561-201ENSMUST00000181563 1943 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Smc1aQ9CU62 C1qtnf6-201ENSMUST00000023075 2402 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Smc1aQ9CU62 Cnppd1-201ENSMUST00000041213 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Smc1aQ9CU62 Ppp2r5c-201ENSMUST00000084985 1847 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
Smc1aQ9CU62 5930412G12Rik-203ENSMUST00000134673 2087 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Smc1aQ9CU62 Lamc3-201ENSMUST00000028187 5871 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Smc1aQ9CU62 Pla2g3-202ENSMUST00000064265 2566 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Smc1aQ9CU62 Gm5779-202ENSMUST00000219564 1477 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Smc1aQ9CU62 I730028E13Rik-201ENSMUST00000216012 1959 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Smc1aQ9CU62 Dnmbp-202ENSMUST00000212032 5074 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Smc1aQ9CU62 Tcf12-218ENSMUST00000184783 3489 ntAPPRIS P3 TSL 5 BASIC14.38□□□□□ -0.11
Smc1aQ9CU62 Taok2-202ENSMUST00000117394 4985 ntAPPRIS P4 TSL 1 (best) BASIC14.38□□□□□ -0.11
Smc1aQ9CU62 Ccnk-201ENSMUST00000101055 2627 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Smc1aQ9CU62 Gm12846-201ENSMUST00000120431 1373 ntBASIC14.38□□□□□ -0.11
Smc1aQ9CU62 Plxdc1-201ENSMUST00000017561 2881 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Smc1aQ9CU62 Tapbp-201ENSMUST00000025161 2894 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Smc1aQ9CU62 Il12rb1-201ENSMUST00000000808 2873 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Smc1aQ9CU62 Golim4-202ENSMUST00000117242 4551 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Smc1aQ9CU62 Tmtc3-201ENSMUST00000058154 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Smc1aQ9CU62 Aifm3-201ENSMUST00000023448 2688 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Smc1aQ9CU62 Gm23931-201ENSMUST00000103842 109 ntBASIC14.38□□□□□ -0.11
Smc1aQ9CU62 Rpl9-203ENSMUST00000120094 680 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
Smc1aQ9CU62 Gm42420-201ENSMUST00000126621 634 ntAPPRIS P1 TSL 3 BASIC14.38□□□□□ -0.11
Smc1aQ9CU62 Tspan17-208ENSMUST00000163915 459 ntTSL 5 BASIC14.38□□□□□ -0.11
Smc1aQ9CU62 Gm8810-201ENSMUST00000172895 754 ntBASIC14.38□□□□□ -0.11
Smc1aQ9CU62 Aif1-206ENSMUST00000173324 875 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Smc1aQ9CU62 Gm8598-201ENSMUST00000221184 836 ntBASIC14.38□□□□□ -0.11
Smc1aQ9CU62 Ambp-201ENSMUST00000030041 1268 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Smc1aQ9CU62 Olfr222-201ENSMUST00000071943 1115 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
Smc1aQ9CU62 Coro6-203ENSMUST00000079770 1298 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Smc1aQ9CU62 AI597479-201ENSMUST00000010434 3458 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Smc1aQ9CU62 Cxadr-202ENSMUST00000114229 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Smc1aQ9CU62 Zfp354c-201ENSMUST00000000632 1683 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Smc1aQ9CU62 Trpv1-201ENSMUST00000006106 2340 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Smc1aQ9CU62 Trim26-202ENSMUST00000123715 1406 ntTSL 5 BASIC14.38□□□□□ -0.11
Smc1aQ9CU62 Naaladl1-201ENSMUST00000044451 2491 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
Smc1aQ9CU62 Accsl-201ENSMUST00000099690 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Smc1aQ9CU62 Ctgf-201ENSMUST00000020171 2398 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Smc1aQ9CU62 Selenbp1-201ENSMUST00000090839 1712 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Smc1aQ9CU62 Selenbp2-201ENSMUST00000090848 1719 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Smc1aQ9CU62 Pcnx2-201ENSMUST00000047239 7236 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Smc1aQ9CU62 Slc44a4-201ENSMUST00000007249 2261 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Smc1aQ9CU62 Tjap1-201ENSMUST00000012440 2426 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Smc1aQ9CU62 Hars2-201ENSMUST00000019287 2002 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Smc1aQ9CU62 Sh2d5-202ENSMUST00000105824 3512 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Smc1aQ9CU62 Pcgf2-201ENSMUST00000018681 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Smc1aQ9CU62 Bcat2-203ENSMUST00000209204 2081 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Smc1aQ9CU62 Hnrnpdl-202ENSMUST00000128187 2752 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Smc1aQ9CU62 Cnn1-201ENSMUST00000001384 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Smc1aQ9CU62 6030458C11Rik-202ENSMUST00000227299 3206 ntBASIC14.37□□□□□ -0.11
Smc1aQ9CU62 Pik3r6-201ENSMUST00000060441 3237 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Smc1aQ9CU62 Gm8213-201ENSMUST00000118191 441 ntBASIC14.37□□□□□ -0.11
Smc1aQ9CU62 Gm15635-202ENSMUST00000131160 917 ntTSL 3 BASIC14.37□□□□□ -0.11
Smc1aQ9CU62 Ssr4-208ENSMUST00000166518 800 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Smc1aQ9CU62 Gm26542-201ENSMUST00000180443 1235 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Smc1aQ9CU62 Gm26618-201ENSMUST00000181123 497 ntTSL 2 BASIC14.37□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 32.4 ms