Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 Ccdc8-201ENSMUST00000094805 4809 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
Usp49Q6P9L4 Vwf-202ENSMUST00000112253 2184 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Usp49Q6P9L4 Gm996-201ENSMUST00000114217 4881 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
Usp49Q6P9L4 Nkd2-201ENSMUST00000022051 4016 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usp49Q6P9L4 Fam198a-202ENSMUST00000213773 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usp49Q6P9L4 Plk2-201ENSMUST00000022212 2800 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usp49Q6P9L4 Rfx7-203ENSMUST00000183372 1457 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Usp49Q6P9L4 Zscan30-202ENSMUST00000224144 1458 ntBASIC14.38□□□□□ -0.11
Usp49Q6P9L4 Dnajb4-201ENSMUST00000029669 1497 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Usp49Q6P9L4 Plch2-201ENSMUST00000105631 5053 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Usp49Q6P9L4 Map4k1-203ENSMUST00000208227 2720 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Usp49Q6P9L4 Map4k1-201ENSMUST00000085835 2724 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usp49Q6P9L4 Pgap2-204ENSMUST00000120879 2141 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usp49Q6P9L4 Olfr533-204ENSMUST00000216258 2874 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Usp49Q6P9L4 Atg7-212ENSMUST00000182902 2543 ntAPPRIS P3 TSL 2 BASIC14.38□□□□□ -0.11
Usp49Q6P9L4 Krit1-201ENSMUST00000080085 2930 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usp49Q6P9L4 A430005L14Rik-202ENSMUST00000105645 977 ntTSL 3 BASIC14.38□□□□□ -0.11
Usp49Q6P9L4 Pnpo-202ENSMUST00000107629 681 ntTSL 3 BASIC14.38□□□□□ -0.11
Usp49Q6P9L4 Pisd-ps1-201ENSMUST00000119128 1115 ntBASIC14.38□□□□□ -0.11
Usp49Q6P9L4 Gm11637-201ENSMUST00000120601 592 ntBASIC14.38□□□□□ -0.11
Usp49Q6P9L4 Rpl19-ps12-201ENSMUST00000121251 591 ntBASIC14.38□□□□□ -0.11
Usp49Q6P9L4 Nat8f1-201ENSMUST00000161198 1021 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usp49Q6P9L4 Tnnt1-208ENSMUST00000166161 750 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Usp49Q6P9L4 Gm31728-201ENSMUST00000192164 435 ntTSL 3 BASIC14.38□□□□□ -0.11
Usp49Q6P9L4 Gm44772-201ENSMUST00000207623 1191 ntBASIC14.38□□□□□ -0.11
Usp49Q6P9L4 Polr2h-201ENSMUST00000021405 950 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usp49Q6P9L4 Tnfrsf19-205ENSMUST00000225730 744 ntAPPRIS ALT2 BASIC14.38□□□□□ -0.11
Usp49Q6P9L4 4921530L21Rik-202ENSMUST00000228913 1115 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
Usp49Q6P9L4 Nudt22-201ENSMUST00000041686 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usp49Q6P9L4 1700029I15Rik-201ENSMUST00000054316 364 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usp49Q6P9L4 Fkbp2-201ENSMUST00000070878 642 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usp49Q6P9L4 Rpl10-202ENSMUST00000074085 855 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usp49Q6P9L4 Gba-202ENSMUST00000167998 1938 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usp49Q6P9L4 Igf2-201ENSMUST00000000033 3708 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usp49Q6P9L4 Slc25a22-223ENSMUST00000201710 2565 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Usp49Q6P9L4 Trmt1l-201ENSMUST00000065625 2749 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usp49Q6P9L4 Dpp9-201ENSMUST00000038794 3374 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usp49Q6P9L4 Adam32-202ENSMUST00000121438 2450 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usp49Q6P9L4 Slc38a10-204ENSMUST00000103018 4578 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usp49Q6P9L4 Gm9530-201ENSMUST00000181160 3281 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Usp49Q6P9L4 Gm20554-201ENSMUST00000177421 2352 ntBASIC14.38□□□□□ -0.11
Usp49Q6P9L4 Trim26-205ENSMUST00000130367 3187 ntAPPRIS P2 TSL 5 BASIC14.38□□□□□ -0.11
Usp49Q6P9L4 Ninj1-202ENSMUST00000120733 1321 ntTSL 5 BASIC14.38□□□□□ -0.11
Usp49Q6P9L4 Bysl-201ENSMUST00000024783 3854 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Usp49Q6P9L4 Asap1-218ENSMUST00000177374 4582 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Usp49Q6P9L4 Slc38a10-216ENSMUST00000179094 4052 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Usp49Q6P9L4 Gm45266-201ENSMUST00000210111 2173 ntBASIC14.37□□□□□ -0.11
Usp49Q6P9L4 Unk-202ENSMUST00000106452 3696 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Usp49Q6P9L4 Sostdc1-201ENSMUST00000041407 1781 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Usp49Q6P9L4 Ifi35-201ENSMUST00000010502 1362 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Usp49Q6P9L4 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
Usp49Q6P9L4 Gm44292-201ENSMUST00000205194 2364 ntBASIC14.37□□□□□ -0.11
Usp49Q6P9L4 Sltm-206ENSMUST00000216816 3755 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Usp49Q6P9L4 Pgm3-201ENSMUST00000070064 2666 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Usp49Q6P9L4 Gm15824-201ENSMUST00000119516 955 ntBASIC14.37□□□□□ -0.11
Usp49Q6P9L4 Atpif1-203ENSMUST00000152993 462 ntTSL 2 BASIC14.37□□□□□ -0.11
Usp49Q6P9L4 Gm26185-201ENSMUST00000157692 266 ntBASIC14.37□□□□□ -0.11
Usp49Q6P9L4 Gm44799-201ENSMUST00000207639 1202 ntBASIC14.37□□□□□ -0.11
Usp49Q6P9L4 Chd3os-203ENSMUST00000218008 1026 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Usp49Q6P9L4 Tomm7-201ENSMUST00000030851 1125 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Usp49Q6P9L4 Rnf10-201ENSMUST00000040555 3106 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Usp49Q6P9L4 Pex2-204ENSMUST00000165309 2038 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Usp49Q6P9L4 Usp16-201ENSMUST00000026710 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Usp49Q6P9L4 Wnt7b-201ENSMUST00000023015 3371 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Usp49Q6P9L4 Bcl6-201ENSMUST00000023151 3525 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Usp49Q6P9L4 Cask-204ENSMUST00000115438 8366 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Usp49Q6P9L4 H2-DMb2-201ENSMUST00000041982 1347 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Usp49Q6P9L4 Grip1-212ENSMUST00000147356 4145 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Usp49Q6P9L4 Adtrp-202ENSMUST00000121404 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Usp49Q6P9L4 4930429D17Rik-201ENSMUST00000198193 1624 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Usp49Q6P9L4 Plxna1-202ENSMUST00000163139 9034 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Usp49Q6P9L4 Cldn15-202ENSMUST00000111093 1902 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Usp49Q6P9L4 Stard5-202ENSMUST00000117410 2832 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Usp49Q6P9L4 Unc45a-201ENSMUST00000032748 3260 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Usp49Q6P9L4 Ap3d1-201ENSMUST00000020420 4805 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Usp49Q6P9L4 Polrmt-201ENSMUST00000020580 3755 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Usp49Q6P9L4 Trim9-209ENSMUST00000222316 3049 ntTSL 2 BASIC14.36□□□□□ -0.11
Usp49Q6P9L4 Hspa9-201ENSMUST00000025217 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Usp49Q6P9L4 5830432E09Rik-203ENSMUST00000210953 2428 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Usp49Q6P9L4 Zp1-201ENSMUST00000025641 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Usp49Q6P9L4 Dpysl5-203ENSMUST00000114729 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Usp49Q6P9L4 Wsb2-202ENSMUST00000111959 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Usp49Q6P9L4 Apaf1-201ENSMUST00000020157 6577 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Usp49Q6P9L4 Grid2ip-203ENSMUST00000120825 3865 ntTSL 5 BASIC14.36□□□□□ -0.11
Usp49Q6P9L4 Gm37391-201ENSMUST00000194891 2318 ntBASIC14.36□□□□□ -0.11
Usp49Q6P9L4 Sfmbt1-206ENSMUST00000228006 3299 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Usp49Q6P9L4 Zbtb7b-202ENSMUST00000107432 3639 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Usp49Q6P9L4 Plpbp-201ENSMUST00000033875 3603 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Usp49Q6P9L4 Tk1-201ENSMUST00000026661 1440 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Usp49Q6P9L4 Gm5638-201ENSMUST00000118618 1258 ntBASIC14.36□□□□□ -0.11
Usp49Q6P9L4 Gm26721-201ENSMUST00000181723 992 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Usp49Q6P9L4 Gm29127-201ENSMUST00000188304 517 ntBASIC14.36□□□□□ -0.11
Usp49Q6P9L4 Gm43416-201ENSMUST00000201916 1015 ntBASIC14.36□□□□□ -0.11
Usp49Q6P9L4 Gm6266-201ENSMUST00000203844 806 ntBASIC14.36□□□□□ -0.11
Usp49Q6P9L4 Slc35d2-202ENSMUST00000220792 917 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Usp49Q6P9L4 AC154305.4-201ENSMUST00000224520 614 ntBASIC14.36□□□□□ -0.11
Usp49Q6P9L4 Med27-201ENSMUST00000028139 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Usp49Q6P9L4 Gp9-201ENSMUST00000032133 881 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Usp49Q6P9L4 Ier3-201ENSMUST00000003635 1131 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Usp49Q6P9L4 Alkbh7-202ENSMUST00000074141 736 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 37.4 ms